View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_2D_low_71 (Length: 421)
Name: NF5654_2D_low_71
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_71 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 183 - 390
Target Start/End: Complemental strand, 7384745 - 7384538
Alignment:
| Q |
183 |
catgaatttcaaatcttatcatttcaattaatatcctcacaagaagagtagtagatcttgtggacaaacaacactatagttttgacaacttcgaagattt |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7384745 |
catgaatttcaaatcttatcatttcaattaatatcctcataagaagagtagtagatcttgtggacaaacaacactatagttttgacaacttcgaagattt |
7384646 |
T |
|
| Q |
283 |
caaagtctaatctaatatatgatgcgcaacctttgatattgaaccgggacaaaaatgttgaattaatccatctcattaaccaacttcaagtgcttgatcc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7384645 |
caaagtctaatctaatatatgatgcgcaacctttgatattgaaccgggacaaaaatgttgaattaatccatctcattaaccaacctcaagtgcttgatcc |
7384546 |
T |
|
| Q |
383 |
tctcaaat |
390 |
Q |
| |
|
|||||||| |
|
|
| T |
7384545 |
tctcaaat |
7384538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 7385043 - 7385133
Alignment:
| Q |
30 |
aaaccacaataagaacgaaacaatgtttaaaatacgaaaaatgctaacttggttatgattactatgcattaaaatgaaacaatgcttaacc |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7385043 |
aaaccacaataagaacgaaacaatgattaaaatacggaaaatgctaacttggttatgattactatgcattaaaatgaaacgatgcttaacc |
7385133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7385039 - 7384963
Alignment:
| Q |
1 |
gcatttcccgtattctatgtttagtttctaaaccacaataagaacgaaacaatgtttaaaatacgaaaaatgctaac |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7385039 |
gcatttcccgtattctatgtttagtttctaaaccacaataagaacgaaacaatgtttaaaatacgggaaatgctaac |
7384963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University