View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_73 (Length: 419)
Name: NF5654_2D_low_73
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 410
Target Start/End: Complemental strand, 37942643 - 37942253
Alignment:
| Q |
20 |
aaataccattaagagaaactcatcgcggtgttgacttgaaacctttgaatatgtttttcttgaggttttaaattcgattttctccggtgtcaatttcgat |
119 |
Q |
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| T |
37942643 |
aaatgccattaagagaaactcatcgcggtgttgacttgaaacctttgaatatgtttttcttgaggttttaaattcgattttctccggtgtcaatttcaat |
37942544 |
T |
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| Q |
120 |
atgttagttgcattcttnnnnnnnnnnncttaatatcactatcagctcaaaatcttgtggataggagatgtactaatgttttgttggagaaatggg-ccc |
218 |
Q |
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| T |
37942543 |
atgttagttgcattcttaaaaaaaa---cttaatatcactatcagctcaaaatcttgtggataggagatgtactaatgttttgttggagaaatggggccc |
37942447 |
T |
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| Q |
219 |
cgaaaaacacttctatcttctatttagtcaatcaaacgtatgtcgacacatgctttgaattcctttggggaatgggatgagaacttcttgatgga--act |
316 |
Q |
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| T |
37942446 |
cgaaaaacacttctatcttctatttagtcaatcaaacgtatgtcgacacatgctttgaattcctttccccaatgggatgagaacttcttgatggatgact |
37942347 |
T |
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| Q |
317 |
tgccactaaacattgttaattagattttagtcctaccgactcctttagactctaatggttagtatattcttggttggggaggcacaataactca |
410 |
Q |
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| T |
37942346 |
tgccactaaacattgttaattagactttagtcctaccgactccttcagactctaatggttagtatattcttggttggggaggcacagtaactca |
37942253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 40075708 - 40075744
Alignment:
| Q |
89 |
aaattcgattttctccggtgtcaatttcgatatgtta |
125 |
Q |
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| T |
40075708 |
aaattcgattatcttcggtgtcaatttcgatatgtta |
40075744 |
T |
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