View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_74 (Length: 396)
Name: NF5654_2D_low_74
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 11103668 - 11104041
Alignment:
| Q |
8 |
tggtgttgaaaaagttagtagccaaagttctttaccaaagaagaaatataggttcgatcgattccttaattcgtctattataaaagaagcctaatcatgt |
107 |
Q |
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| T |
11103668 |
tggtgttgaaaaagttagtagccaaagttctttaccaaagaagaaatataggttcgatctattccttaattcgtctatgataaaagaagcctaatcatgt |
11103767 |
T |
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| Q |
108 |
ttgcaaggaaaaaatgaatgctctcatgtcgtctataagattttcagtggaattcaataatcaactataccgatacacttcaaataaaatttagatttaa |
207 |
Q |
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| T |
11103768 |
ttgcaaggaaaaaatgaatgctcttatgtcgtctataagattttcagtggaattcaataatcaactataccgatacacttcaaataaaataaagatttaa |
11103867 |
T |
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| Q |
208 |
atatga-tttagtcaatgcattatagcatttttaactcccaacgttaacttattggatcctaagacatgattttaattattgggccagagactctaagaa |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11103868 |
atatgattttagtcaatgcattatagcatttttaactcccaacgttaacttattggatcctaagacatgattttaattattgggccacagactctaagaa |
11103967 |
T |
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| Q |
307 |
caattataatattcgtaaagactgaatttaaataaaaaactatcacggattaaaatcaaaatatactagaaatg |
380 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
11103968 |
caattataatattcgtaaagactaaatttaaataaaaaactatcacgtattaaaataaaaatatactagaaatg |
11104041 |
T |
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