View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_76 (Length: 367)
Name: NF5654_2D_low_76
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 56069913 - 56069678
Alignment:
| Q |
1 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56069913 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
56069814 |
T |
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| Q |
101 |
catcacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgt |
200 |
Q |
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| T |
56069813 |
catcacagaggtgtaccacaaatggcagaaactggtaagcacact----ttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgt |
56069718 |
T |
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| Q |
201 |
taatttctcgtttctttccaatttcatcgacgatgtttcc |
240 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
56069717 |
taatttctcgtttctttccaatttcatcgacgatttttcc |
56069678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 56069644 - 56069533
Alignment:
| Q |
241 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
340 |
Q |
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| T |
56069644 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
56069545 |
T |
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| Q |
341 |
aaccctgatgtc |
352 |
Q |
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|||||||||||| |
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| T |
56069544 |
aaccctgatgtc |
56069533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 38398409 - 38398594
Alignment:
| Q |
1 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
38398409 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatatggtat----gaatgtttttgatttagtcgaatggaagaagcaaaa |
38398504 |
T |
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| Q |
101 |
catcacagaggtgtaccacaaatggcagaaactggtaagcacactttagttaatttacttttccaaaacttgacaaaattgagttaaatgcatct |
195 |
Q |
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||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||||| | |||||||||||| |||||||||| |
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| T |
38398505 |
catcacagaggtgtaccacaattggcagaagctggtaag-acact----ttaatctacttttccaaaacatcacaaaattgagtgaaatgcatct |
38398594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 241 - 345
Target Start/End: Original strand, 38398695 - 38398799
Alignment:
| Q |
241 |
acaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctac |
340 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
38398695 |
acaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctac |
38398794 |
T |
|
| Q |
341 |
aaccc |
345 |
Q |
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||||| |
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| T |
38398795 |
aaccc |
38398799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 10170533 - 10170667
Alignment:
| Q |
1 |
ctcaaatcctcttgttgcaaagaattttgaccctcgtgcttgtggatgggcatacggtatgtatgaatgtttttgatttagttgaatggaagaagcaaaa |
100 |
Q |
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||||||||||||| |||||||||||||||| |||| ||||||||| ||||| ||||| ||| ||||| ||||||||||| ||||||||| |||||| |
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| T |
10170533 |
ctcaaatcctcttattgcaaagaattttgatcctcatgcttgtgggtgggcctacggaatg----aatgtatttgatttagtccaatggaagaggcaaaa |
10170628 |
T |
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| Q |
101 |
catcacagaggtgtaccacaaatggcagaaactggtaag |
139 |
Q |
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|||||||||||||||||||| |||||||| ||||||| |
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| T |
10170629 |
gatcacagaggtgtaccacaactggcagaatttggtaag |
10170667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 10171013 - 10171107
Alignment:
| Q |
248 |
tggaaattaggaacactgccacctggtcttatgacattctggaaacatactttcccgctgaaccgatcctggcacgtcttgggtcttggctacaa |
342 |
Q |
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||||| ||||||||||||||||| ||||| || || |||||||||| |||||||| |||||| | | ||||| || ||||||||||||||||| |
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| T |
10171013 |
tggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgttgggtcttggctacaa |
10171107 |
T |
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