View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_84 (Length: 364)
Name: NF5654_2D_low_84
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_84 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 154 - 364
Target Start/End: Original strand, 7384219 - 7384430
Alignment:
| Q |
154 |
tcccttataagaccgattaaagtttaaaaaataatggcactcttcatcttataagattgttttatgagaataagttatagacaatatgaaa-cctaatat |
252 |
Q |
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| T |
7384219 |
tcccttataagaccgattaaagtttaaaaaataatggcactcttcaccttataagattgttttatgagaataagttatagacaatatgaaaacctaatat |
7384318 |
T |
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| Q |
253 |
gatataaggttcgaaggagtgtattgcaaaaaacatctcataaaataaaaatagggattgatttgagtttttaaatagtgacaccattactttacaaatc |
352 |
Q |
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| T |
7384319 |
gatataaggttcgaaggagtgtattgcaaaaaacatctcataaaataaaaataaggattgatttgagtttttaaatagtgacaccattactttacaaatc |
7384418 |
T |
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| Q |
353 |
aattttgaaata |
364 |
Q |
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| T |
7384419 |
agttttgaaata |
7384430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 7383806 - 7383890
Alignment:
| Q |
75 |
tttgagtttcgaatgttttatttttacttttaaaagcaaaacttttgttttgaaggttagaattatttcgaatgtttcgtccctt |
159 |
Q |
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| T |
7383806 |
tttgagtttcgaatgttttatttttacttttaaaagcaaaacttttgttttgaaggttagaattatttcgaatgtttcgtgcctt |
7383890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 7383716 - 7383770
Alignment:
| Q |
19 |
gtgtgtacgccacacactagcctatgaattttcttcacaagaaacttcccgttat |
73 |
Q |
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| T |
7383716 |
gtgtgtacgccacacactagcctatgaattttcttcacaagaaacttcccgttat |
7383770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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