View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_87 (Length: 349)
Name: NF5654_2D_low_87
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 26249039 - 26248734
Alignment:
| Q |
19 |
gtaacctatcaaattctaggacatgacgttgtcaacatatgtttgactgtctgagttggaaagggatgtaaatctatgttatgcaatttaagtcttcttt |
118 |
Q |
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| T |
26249039 |
gtaacctatcaaattctaggacatgacgttgtcaacatatgtttgactgtctgagttggaaagggatgtaaatctatgttatgcaatttaagtcttcttt |
26248940 |
T |
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| Q |
119 |
aaaactttggtcattcaattttgttacaagtctcttttgtgtgtcatgccatttaaaggtatgtaagccccaaattagcacctaagtcacaaaattttaa |
218 |
Q |
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| T |
26248939 |
aaaactttggtcattcaattttgttacaagtctcttttgtgtgtcatgccatttaaaggtatgtaagccccaaattagcacctaagtcacaaaattttaa |
26248840 |
T |
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| Q |
219 |
gaacaagttttcatctaactatattaagtagctgnnnnnnnagtggtgaaaaaggaacaacgcactttaaagtaaagcttcaatgtttagcttcacaaaa |
318 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
26248839 |
gaactagttttcatctaactatattaggtagctgtttttttagtggtgaaaaaggaagaacgcactttaaagtaaagctttaatgtttagtttcacaaaa |
26248740 |
T |
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| Q |
319 |
ataacg |
324 |
Q |
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|||||| |
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| T |
26248739 |
ataacg |
26248734 |
T |
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