View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_2D_low_89 (Length: 346)

Name: NF5654_2D_low_89
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_2D_low_89
NF5654_2D_low_89
[»] chr7 (3 HSPs)
chr7 (19-333)||(42179753-42180050)
chr7 (19-191)||(42146609-42146781)
chr7 (19-191)||(42158904-42159076)
[»] chr1 (3 HSPs)
chr1 (281-333)||(7004657-7004709)
chr1 (281-331)||(22172855-22172905)
chr1 (229-261)||(7004605-7004637)
[»] chr8 (3 HSPs)
chr8 (281-333)||(8656383-8656435)
chr8 (229-266)||(40619850-40619887)
chr8 (292-333)||(27574813-27574854)
[»] chr4 (1 HSPs)
chr4 (289-333)||(24858998-24859042)
[»] chr5 (4 HSPs)
chr5 (282-333)||(977491-977542)
chr5 (288-333)||(20666545-20666590)
chr5 (281-312)||(6886421-6886452)
chr5 (229-261)||(12291511-12291543)
[»] chr3 (1 HSPs)
chr3 (292-333)||(13936186-13936227)
[»] chr2 (1 HSPs)
chr2 (282-330)||(33440974-33441022)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 42180050 - 42179753
Alignment:
Q  19 aaaaggtgtaatgaaacacgttgatgaaaatggaaaagttgggcatgatgaagttgatgttgcgaaacttggtttacatgacagaaaactcttgttggat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42180050 aaaaggtgtaatgaaacacgttgatgaaaatggaaaagttgggcatgatgaagttgatgttgcgaaacttggtttacatgacaaaaaactcttgttggat 42179951  T
Q  119 agcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttggtttgttttatcaaactttgattatct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42179950 agcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttggtttgttttatcaaactttgattatct 42179851  T
Q  219 ataactaggttgttcaaatccaaaccgattcaaattaaaaccggaaacaaatnnnnnnnnttgaaaactgcacaaaatcgaatattattggatgtttttg 318  Q
    ||||||| ||||||||||||||||||||||||||||||||    |||             ||||||||||||||||| |||||||||||| ||||||||     
T  42179850 ataactaagttgttcaaatccaaaccgattcaaattaaaa----aaa-------------ttgaaaactgcacaaaaccgaatattattgaatgttttta 42179768  T

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Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 42146781 - 42146609
Alignment:
Q  19 aaaaggtgtaatgaaacacgttgatgaaaatggaaaagttgggcatgatgaagttgatgttgcgaaacttggtttacatgacagaaaactcttgttggat 118  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  42146781 aaaaggtgtaataaaacacgttgatgaaaatggaaaagttgtgcatgatgaagttgatgttgcgaaacttggttttcatgacaaaaaactcttgttggat 42146682  T
Q  119 agcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttg 191  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  42146681 agcatccttaagattgtcgaagaagacaatgagaagtttctcagaaaacttagagaccgacaagacaggtttg 42146609  T

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Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 42159076 - 42158904
Alignment:
Q  19 aaaaggtgtaatgaaacacgttgatgaaaatggaaaagttgggcatgatgaagttgatgttgcgaaacttggtttacatgacagaaaactcttgttggat 118  Q
    |||||||||| |||| || |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |  ||  |||||||||||    
T  42159076 aaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgatgaagttgatgttgctaaacttggtttacatgataagaagatcttgttggat 42158977  T
Q  119 agcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttg 191  Q
    || ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  42158976 agtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttg 42158904  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 7004657 - 7004709
Alignment:
Q  281 gaaaactgcacaaaatcgaatattattggatgtttttgaatgacattttgtga 333  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7004657 gaaaactgcacaaaatcgaatattattggatgtgtttgaatgacattttgtga 7004709  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 22172855 - 22172905
Alignment:
Q  281 gaaaactgcacaaaatcgaatattattggatgtttttgaatgacattttgt 331  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||| |||||    
T  22172855 gaaaactgcacaaaaccgaatattattggatgtgtttggatgacactttgt 22172905  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 7004605 - 7004637
Alignment:
Q  229 tgttcaaatccaaaccgattcaaattaaaaccg 261  Q
    |||||||||||||| ||||||||||||||||||    
T  7004605 tgttcaaatccaaatcgattcaaattaaaaccg 7004637  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 8656383 - 8656435
Alignment:
Q  281 gaaaactgcacaaaatcgaatattattggatgtttttgaatgacattttgtga 333  Q
    ||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  8656383 gaaaactgcacaaaatcgaatattattggatgtgtttggatgatattttgtga 8656435  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 40619887 - 40619850
Alignment:
Q  229 tgttcaaatccaaaccgattcaaattaaaaccggaaac 266  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  40619887 tgttcaaatccaaaccgatccaaattaaaaccggaaac 40619850  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 27574813 - 27574854
Alignment:
Q  292 aaaatcgaatattattggatgtttttgaatgacattttgtga 333  Q
    |||| ||||||||||||||||| |||| ||||||||||||||    
T  27574813 aaaaccgaatattattggatgtgtttggatgacattttgtga 27574854  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 24858998 - 24859042
Alignment:
Q  289 cacaaaatcgaatattattggatgtttttgaatgacattttgtga 333  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||    
T  24858998 cacaaaatcgaatattattggatgtgtttggatgacattttgtga 24859042  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 977491 - 977542
Alignment:
Q  282 aaaactgcacaaaatcgaatattattggatgtttttgaatgacattttgtga 333  Q
    ||||| ||||||||| |||||||||||||||||||||||||  |||||||||    
T  977491 aaaaccgcacaaaattgaatattattggatgtttttgaatgctattttgtga 977542  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 20666545 - 20666590
Alignment:
Q  288 gcacaaaatcgaatattattggatgtttttgaatgacattttgtga 333  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||||    
T  20666545 gcacaaaaccgaatattattggatgtgtttggatgacattttgtga 20666590  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 312
Target Start/End: Original strand, 6886421 - 6886452
Alignment:
Q  281 gaaaactgcacaaaatcgaatattattggatg 312  Q
    ||||||||||||||||||||||||||||||||    
T  6886421 gaaaactgcacaaaatcgaatattattggatg 6886452  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 12291543 - 12291511
Alignment:
Q  229 tgttcaaatccaaaccgattcaaattaaaaccg 261  Q
    |||||||||||||||||||||||| ||||||||    
T  12291543 tgttcaaatccaaaccgattcaaaataaaaccg 12291511  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 333
Target Start/End: Original strand, 13936186 - 13936227
Alignment:
Q  292 aaaatcgaatattattggatgtttttgaatgacattttgtga 333  Q
    ||||| |||||||||||||||| |||| ||||||||||||||    
T  13936186 aaaattgaatattattggatgtctttggatgacattttgtga 13936227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 33440974 - 33441022
Alignment:
Q  282 aaaactgcacaaaatcgaatattattggatgtttttgaatgacattttg 330  Q
    ||||| |||||||| ||||||||||||||||| |||| |||| ||||||    
T  33440974 aaaaccgcacaaaaccgaatattattggatgtgtttggatgatattttg 33441022  T

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