View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_low_94 (Length: 310)
Name: NF5654_2D_low_94
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 49690647 - 49690933
Alignment:
| Q |
3 |
ttgtccagaatcatttgattgtggaagtcttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgt |
102 |
Q |
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| T |
49690647 |
ttgtccagactcatttggttgtggaaatcttgggttttttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgt |
49690746 |
T |
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| Q |
103 |
gataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacc |
202 |
Q |
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| T |
49690747 |
gataatctcaacaaaactgctatgaagtatgtccagttaaccaaaagaggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaca |
49690846 |
T |
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| Q |
203 |
ctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctc |
289 |
Q |
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| T |
49690847 |
ctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctc |
49690933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 49679020 - 49679295
Alignment:
| Q |
3 |
ttgtccagaatcatttgattgtggaagtcttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgt |
102 |
Q |
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| T |
49679020 |
ttgtccagaatcatttgattgtggaa--------ttgattaaatacccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgt |
49679111 |
T |
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| Q |
103 |
gataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacc |
202 |
Q |
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| T |
49679112 |
gataatctcaacaaaactgctatgaagcacgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaaca |
49679211 |
T |
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| Q |
203 |
ctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctcc |
286 |
Q |
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| T |
49679212 |
ctatttccattattgaccccaatatcaccaagcttttggagaagaatgcttgtgaggcattcagccatgttaatattacactcc |
49679295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 49686387 - 49686649
Alignment:
| Q |
3 |
ttgtccagaatcatttgattgtggaagtcttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgt |
102 |
Q |
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|
|||||||||||||||||||||||||| |||||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49686387 |
ttgtccagaatcatttgattgtggaaatcttggattggttggctacccttttaccacagttgaattcccaaactgtggtgcattggcaattcaaggttgt |
49686486 |
T |
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| Q |
103 |
gataatctcaacaaaactgctatgaagtatgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacc |
202 |
Q |
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| T |
49686487 |
gacgatctcaacaaaactgctacgaaacacgtccagtttaccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcc------caaca |
49686580 |
T |
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| Q |
203 |
ctatttccattattgaccccaatatcaccaagcttttggagaaaaatgcttgtgaggcattcagctatg |
271 |
Q |
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||||||||||| |||| | ||| |||||||||||||| ||||||||||||| ||||| || ||||||| |
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| T |
49686581 |
ctatttccattgttgatctgaatttcaccaagcttttgcagaaaaatgcttgcgaggcctttagctatg |
49686649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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