View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_high_1 (Length: 1042)
Name: NF5654_high_1
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 559 - 1036
Target Start/End: Complemental strand, 42162436 - 42161959
Alignment:
| Q |
559 |
aataaaacagtaatagtatgagtatactatgaatcaataataataatattacaacaacaagaactcaagaaacaagtattgaaactcatgaaattaaaga |
658 |
Q |
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| T |
42162436 |
aataaaacagtaatagtatgagtatactatgaatcaataataataatattacaacaacaagaactcaagaaacaagtattgaaactcatgaaattaaaga |
42162337 |
T |
|
| Q |
659 |
caagtagggcaatggactaacccattctcattacacttggggcaccttatctcacccccagcatcagcagcaaccaacttacaactcccaccacaatccc |
758 |
Q |
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| T |
42162336 |
caagtagggcaatggactaacccattctcattacacttggggcaccttatctcacccccagcatcagaagtaaccaacttacaactcccaccacaatccc |
42162237 |
T |
|
| Q |
759 |
aacaaggaacaaatctaaccccaccacatccaacacacccttgtcttccaacacctctctccacacgtgtcgcattcagtatcctcccaagtcgacccgt |
858 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162236 |
aacaaggaacaaatctaaccccaccacatccaacacacccttgtcttccaacacctctctccacacgtgtcgcattcagtatcctcccaagtcgacccgt |
42162137 |
T |
|
| Q |
859 |
ttcattaagctccatcaactcatccaacccacccaaatacctacccttcacaaacacccttggcaaaaccacaccaacccctaactcttcctccgttaat |
958 |
Q |
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| T |
42162136 |
ttcattaagctccatcaactcatccaacccacccaaatacctacccttcacaaacacccttggcaaaaccacaccaacccctaactcttcctccgttaat |
42162037 |
T |
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| Q |
959 |
aacaactccttcacttcctttaaaaactctccatgaagtgccacgtcacgttcatcaaatacaaccctatgcttctcc |
1036 |
Q |
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| T |
42162036 |
aacaactccttcacttcctttaaaaactctccatgaagtgccacgtcacgttcatcaaatacaaccctatgattctcc |
42161959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 42163037 - 42162791
Alignment:
| Q |
16 |
agtgtaacttttttgttgaacaaaatgactcatttgagcatgcgatcattgatactagaccaaatagaaccatgatcacaactcagaatgtttgcacaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42163037 |
agtgtaacttttttgttgaacaaaatgactcatttgagcaagcgatcattgatactagaccaaatagaaccatgatcacaactcagaatgtttgcacaag |
42162938 |
T |
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| Q |
116 |
cacaacaattggttttgtgatagaatttgaacaatctaccttagcttcaatattcatgaccagaccaccacaccacttcagaatcaacatgtaactcaac |
215 |
Q |
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| T |
42162937 |
cacaacaattggttttgtgatagaatttgaacaatctaccttagcttcaatattcatgaccagacca-----ccacttcagaatcaacatgtaactcaac |
42162843 |
T |
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| Q |
216 |
tgccatgtatctcgaattctcgatgatgaggagctaagctccatatttcaag |
267 |
Q |
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| T |
42162842 |
tgccatgtatctcgaattctggatgatgaggagctaacctccatatctcaag |
42162791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 430 - 559
Target Start/End: Complemental strand, 42162590 - 42162461
Alignment:
| Q |
430 |
ggtgagatatatagaaaatacattaaaggtgtcacatattctctagtcgtaccatacataatctataaatatattcccaagatgagattacaaacatgta |
529 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42162590 |
ggtgagatgtatagaaaatacattaaaggtgtcacatattctctagtcgtaccatacataatctataaatatattcccgagatgagattacaaacatgta |
42162491 |
T |
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| Q |
530 |
ctcaacatatacatatactacacttgagaa |
559 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42162490 |
ctcaacatatacatatactacacttgagaa |
42162461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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