View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_high_10 (Length: 435)

Name: NF5654_high_10
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_high_10
NF5654_high_10
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-417)||(356070-356482)
[»] chr5 (6 HSPs)
chr5 (151-417)||(24887412-24887681)
chr5 (269-417)||(1589530-1589681)
chr5 (20-110)||(4560247-4560337)
chr5 (33-110)||(18883572-18883649)
chr5 (20-110)||(18934231-18934321)
chr5 (162-239)||(26267200-26267276)
[»] chr7 (4 HSPs)
chr7 (329-404)||(23395290-23395365)
chr7 (20-79)||(24468678-24468737)
chr7 (20-79)||(24473626-24473685)
chr7 (209-330)||(10235172-10235290)
[»] chr3 (7 HSPs)
chr3 (211-376)||(4285325-4285495)
chr3 (20-110)||(46428734-46428824)
chr3 (151-258)||(8891079-8891183)
chr3 (20-110)||(54812179-54812269)
chr3 (28-84)||(43912209-43912265)
chr3 (20-110)||(42794664-42794754)
chr3 (20-80)||(33779486-33779545)
[»] chr1 (4 HSPs)
chr1 (307-405)||(14601085-14601186)
chr1 (20-116)||(2601360-2601456)
chr1 (343-405)||(12789146-12789208)
chr1 (20-110)||(22065132-22065222)
[»] chr8 (5 HSPs)
chr8 (329-417)||(45503461-45503549)
chr8 (20-110)||(44145882-44145972)
chr8 (20-80)||(38560579-38560639)
chr8 (20-136)||(9031501-9031617)
chr8 (211-247)||(33167810-33167846)
[»] chr4 (8 HSPs)
chr4 (211-329)||(36614323-36614438)
chr4 (20-93)||(47597538-47597611)
chr4 (171-392)||(8898955-8899179)
chr4 (203-263)||(10285844-10285904)
chr4 (32-93)||(43270741-43270802)
chr4 (211-294)||(15154935-15155018)
chr4 (20-110)||(4228349-4228439)
chr4 (308-372)||(31371292-31371359)
[»] chr6 (2 HSPs)
chr6 (20-110)||(1222911-1223001)
chr6 (269-330)||(20081765-20081826)
[»] chr2 (3 HSPs)
chr2 (56-126)||(26381181-26381251)
chr2 (20-110)||(17290207-17290297)
chr2 (145-241)||(29784059-29784155)


Alignment Details
Target: scaffold0003 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 356070 - 356482
Alignment:
Q  8 cgaagaatatacaagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaag 107  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||    
T  356070 cgaagaaaatacaagtgctgattaacttgctaactttagcgtttttatggatcaattgaatttgattgttttggagagtcctcctagtgaccatcaaaag 356169  T
Q  108 ctcctctttagtgatgtttttagggcttgcatatgaaagccccgcaagtgcactgttctatcaagtagtaaaaagagtattgatccacatgaaattttat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| | ||||||||    
T  356170 ctcctctttagtgatgtttttagggcttgcatatgaaagccccgcaagtgcacttttctatcaaatagtaaaaagagtattgatctacagggaattttat 356269  T
Q  208 atgattaccaatctaatttttagttttaattagcggaaaagaaataagtttgttaacaacaaagtttgtttggtttaaaaatcagatgtttaaagagcgt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||| ||| |    
T  356270 atgattaccaatctaatttttagttttaattagcggaaaagaaataagtttgttaagagcaatgtttgtttggtttaaaattcagatgtttaaaaagcat 356369  T
Q  308 catgggattgaggttttcatc---atgtttaatccattacattccttatctatttctctattctataatgaaatgtttctaaggacaagacattcaattg 404  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  356370 catgggattgaggttttcatctcaatgtttaatccattacattccttatgtatttctctattctataatgaaatgtttctaaggacaagacattcaattg 356469  T
Q  405 gcataccatgttt 417  Q
    |||||||||||||    
T  356470 gcataccatgttt 356482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 151 - 417
Target Start/End: Complemental strand, 24887681 - 24887412
Alignment:
Q  151 gcaagtgcactgttctatcaagtagtaaaaagagtattgatccacatgaaattttatatgattaccaatctaatttttagttttaattagcggaaaagaa 250  Q
    ||||||| || |||||||| ||||| |||||  ||||||||||||  | | |||||| |||||| ||||||||||| |  |||| |||||| |||||  |    
T  24887681 gcaagtgtacggttctatcgagtaggaaaaaatgtattgatccacgaggagttttatgtgattatcaatctaatttctgtttttgattagctgaaaatga 24887582  T
Q  251 ataagtttgttaacaacaaagtttgtttggtttaaaaatcagatgtttaaagagcgtcatgggattgaggttttcatc---atgtttaatccattacatt 347  Q
    ||||||||||||| | ||| ||||||| ||||||||| ||||||||||| | | | |||||||||| |||||||||||   |||||||||| ||||||||    
T  24887581 ataagtttgttaagagcaatgtttgttaggtttaaaattcagatgtttataaaacatcatgggattaaggttttcatctgaatgtttaatctattacatt 24887482  T
Q  348 ccttatctatttctctattctataatgaaatgtttctaaggacaagacattcaattggcataccatgttt 417  Q
    |   |||||||||| |||||| |||| |||| ||||||||||||   ||||||||||| ||| |||||||    
T  24887481 ctcaatctatttctttattctgtaattaaatatttctaaggacatagcattcaattggtatatcatgttt 24887412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 269 - 417
Target Start/End: Original strand, 1589530 - 1589681
Alignment:
Q  269 aagtttgtttggtttaaaaatcagatgtttaaagagcgtcatgggattgaggttttcatc---atgtttaatccattacattccttatctatttctctat 365  Q
    ||||||||||||||||||| ||| ||||||||| ||| |||||| |||||||||||||||   |||||||||| | |||||||| |||||||||||||||    
T  1589530 aagtttgtttggtttaaaattcaaatgtttaaaaagcatcatggaattgaggttttcatctcaatgtttaatctaatacattccctatctatttctctat 1589629  T
Q  366 tctataatgaaatgtttctaaggacaagacattcaattggcataccatgttt 417  Q
    |||||||||||||||||||| ||||||  ||||||||||| ||| |||||||    
T  1589630 tctataatgaaatgtttctatggacaaagcattcaattggtatatcatgttt 1589681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 4560337 - 4560247
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    ||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  4560337 aagtgctgattgacttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctactgagcttcgaaagctc 4560247  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 18883572 - 18883649
Alignment:
Q  33 cttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||||| ||||||||||||||| || |||||||||||||| ||||||||| || ||||| ||| | ||||||||||    
T  18883572 cttgctaattttagcatttttgtgaataatttgaatttgattattttggagactcctcctactgagcttcaaaagctc 18883649  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 18934231 - 18934321
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  18934231 aagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 18934321  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 26267276 - 26267200
Alignment:
Q  162 gttctatcaagtagtaaaaagagtattgatccacatgaaattttatatgattaccaatctaatttttagttttaatta 239  Q
    |||||||||||||||||||| | | |||||||| ||| | |||  ||||||||| ||| |||||||||||||| ||||    
T  26267276 gttctatcaagtagtaaaaataatgttgatccatatggagtttc-tatgattactaatttaatttttagttttgatta 26267200  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 23395365 - 23395290
Alignment:
Q  329 atgtttaatccattacattccttatctatttctctattctataatgaaatgtttctaaggacaagacattcaattg 404  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  23395365 atgtttaatccattacatttcctatctatttctctattcaataatgaaatagttctaaggacaagacattcaattg 23395290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 24468678 - 24468737
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgtttt 79  Q
    |||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||| ||||    
T  24468678 aagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattatttt 24468737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 24473626 - 24473685
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgtttt 79  Q
    |||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||| ||||    
T  24473626 aagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattatttt 24473685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 330
Target Start/End: Complemental strand, 10235290 - 10235172
Alignment:
Q  209 tgattaccaatctaatttttagttttaattagcggaaaagaaataagtttgttaacaacaaagtttgtttggtttaaaaatcagatgtttaaagagcgtc 308  Q
    |||||||||||||||||||||||||| ||||||  ||||  ||||| || ||||| | |||   |||||| | |||||| ||||||  ||||| |||| |    
T  10235290 tgattaccaatctaatttttagttttgattagctaaaaaagaataatttggttaagagcaatagttgttt-gcttaaaattcagat-attaaaaagcg-c 10235194  T
Q  309 atgggattgaggttttcatcat 330  Q
    |||||||||| |||||||||||    
T  10235193 atgggattgatgttttcatcat 10235172  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 211 - 376
Target Start/End: Complemental strand, 4285495 - 4285325
Alignment:
Q  211 attaccaatctaatttttagttttaattagcggaaaagaaataagtttgt---taacaacaaagtttgtttggtttaaaaatcagatgtttaaagagcgt 307  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||  |   ||| ||||| ||||||||| ||||||| ||| || |||||| | |||    
T  4285495 attaccaatctaatttttagttttaattagctgaaaaggaataagttgttaattaagaacaacgtttgtttg-tttaaaattcaaatatttaaaaaacgt 4285397  T
Q  308 catgggattgaggttttcatcat---gtttaatccattacattccttatctatttctctattctataatgaa 376  Q
    |||  |||||| |||||||||||   ||| ||||| |  |||||| ||||||||||| ||||||||||||||    
T  4285396 catttgattgaagttttcatcataatgttaaatccttagcattccctatctatttctttattctataatgaa 4285325  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 46428734 - 46428824
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  46428734 aagtgccgattggcttgctaattttagcatttatgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 46428824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 8891183 - 8891079
Alignment:
Q  151 gcaagtgcactgttctatcaagtagtaaaaagagtattgatccacatgaaattttatatgattaccaatctaatttttagttttaattagcggaaaagaa 250  Q
    |||||||||| ||||||||||||||||||||   ||| |||||||||||| |||||||| |||||| |||| ||| |   |||| |||||  |||||| |    
T  8891183 gcaagtgcacagttctatcaagtagtaaaaa---tatcgatccacatgaagttttatattattaccgatctgattctcttttttgattagttgaaaagga 8891087  T
Q  251 ataagttt 258  Q
    ||||||||    
T  8891086 ataagttt 8891079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 54812269 - 54812179
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||| ||| ||||| || ||||| ||| | || |||||||    
T  54812269 aagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattatttcggagactcctcctattgagcttcgaaagctc 54812179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 43912265 - 43912209
Alignment:
Q  28 attaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggaga 84  Q
    |||| |||||||| |||| ||||| |||| |||||||||||||| ||||||||||||    
T  43912265 attaccttgctaattttaacatttctgtgaatcatttgaatttggttgttttggaga 43912209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 42794664 - 42794754
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| ||||| || | |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  42794664 aagtgccgattggcttgctaattttagaatatatgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 42794754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 33779486 - 33779545
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttg 80  Q
    ||||| |||||||||||| ||| ||| |||||||||  |||||||||||||| ||||||||    
T  33779486 aagtgttgattaacttgcaaacattaacatttttgt-catcatttgaatttgtttgttttg 33779545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 14601085 - 14601186
Alignment:
Q  307 tcatgggattga-ggtttt--catcatgtttaatccattacattccttatctatttctctattctataatgaaatgtttctaaggacaagacattcaatt 403  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||  |||||||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  14601085 tcatgggattgatggttttatcataatgtttaatccattacattctctatctatttctctattctataatgaaatttttccaaggacaatgcattcaatt 14601184  T
Q  404 gg 405  Q
    ||    
T  14601185 gg 14601186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 2601360 - 2601456
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctcctcttt 116  Q
    ||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||||||| || || | ||||||| | ||||||||| ||||||    
T  2601360 aagtgcttattggcttgctaactatagcatttttgtggatcatttgaatttgattgttttggggaatccttctagtgagcttcaaaagcttctcttt 2601456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 12789208 - 12789146
Alignment:
Q  343 acattccttatctatttctctattctataatgaaatgtttctaaggacaagacattcaattgg 405  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  12789208 acattccatatttattcctctattctataatgaaatgtttctaaggacaaggaattcaattgg 12789146  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 22065222 - 22065132
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| |||||||| | |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  22065222 aagtgccgattggcttgctaattttagcatatctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 22065132  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 417
Target Start/End: Original strand, 45503461 - 45503549
Alignment:
Q  329 atgtttaatccattacattccttatctatttctctattctataatgaaatgtttctaaggacaagacattcaattggcataccatgttt 417  Q
    |||||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| ||| |||||||    
T  45503461 atgtttaatctattgcattctttatctatttccctattctataatgaaatgtttctaagaactagacaatcaattggtatatcatgttt 45503549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 44145882 - 44145972
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    ||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  44145882 aagtgctgattgacttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 44145972  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 38560639 - 38560579
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttg 80  Q
    |||||| ||||  |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  38560639 aagtgccgattggcttgctaattttagcatttttgtgaatcatttgaatttgattgttttg 38560579  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 9031617 - 9031501
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctcctctttagt 119  Q
    ||||| |||||  ||||| ||| |||||||| ||  |||||||||||||||| || ||||||||| |||||||||||| | |||||  ||||| |||  |    
T  9031617 aagtgttgattggcttgcaaacattagcattattaaggatcatttgaatttgctttttttggagactcttcctagtgagcttcaaagactcctgtttgat 9031518  T
Q  120 gatgtttttagggcttg 136  Q
    || |||||| |||||||    
T  9031517 gacgtttttggggcttg 9031501  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 33167810 - 33167846
Alignment:
Q  211 attaccaatctaatttttagttttaattagcggaaaa 247  Q
    |||||||||||||||||||||||| |||||| |||||    
T  33167810 attaccaatctaatttttagttttgattagctgaaaa 33167846  T

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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 36614323 - 36614438
Alignment:
Q  211 attaccaatctaatttttagttttaattagcggaaaagaaataagtttgttaacaacaaagtttgtttggtttaaaaatcagatgtttaaagagcgtcat 310  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||||| || | |  || |||||||||||| |||| |||||  |||||| ||||| ||    
T  36614323 attaccaatctaatttttaattttgattagctgaaaagaaataagttt-ttgagagtaatgtttgtttggttgaaaattcaga--tttaaatagcgttat 36614419  T
Q  311 gggattgaggttttcatca 329  Q
    |||||||  ||||||||||    
T  36614420 gggattgttgttttcatca 36614438  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 47597611 - 47597538
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttccta 93  Q
    |||||| ||||  |||||||| ||||||||||||||| ||||||||||||||||| ||||||||| || |||||    
T  47597611 aagtgccgattggcttgctaattttagcatttttgtgaatcatttgaatttgattattttggagactcctccta 47597538  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 392
Target Start/End: Complemental strand, 8899179 - 8898955
Alignment:
Q  171 agtagtaaaaagagtattgatccacatgaaattttatatgattaccaatctaatttttagttttaattagc-ggaaaagaaataagtttgttaacaacaa 269  Q
    ||||||||||||||||| ||| || | || ||||||| ||||||||  ||||||| | |||||| ||||||   ||||| ||||||||| |||| | |||    
T  8899179 agtagtaaaaagagtatcgattcataggagattttatgtgattaccggtctaattctcagttttgattagctaaaaaaggaataagttt-ttaagagcaa 8899081  T
Q  270 agtttgtttggtttaaaaatcagatgtttaaagagcgtcatgggattgaggttttcatc---atgtttaatccattacattccttatctatttctctatt 366  Q
     |||||||| |||||||| | | ||  ||| | |||||||||||||||| | |||||||   ||||  ||||  | ||||||| ||||||||||||||||    
T  8899080 tgtttgttttgtttaaaagttatat-attagaaagcgtcatgggattgatggtttcatcataatgtcaaatctttaacattccctatctatttctctatt 8898982  T
Q  367 ctataatgaaat-gtttctaaggacaa 392  Q
     ||||||||| |  |||||||||||||    
T  8898981 ttataatgaattcatttctaaggacaa 8898955  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 10285844 - 10285904
Alignment:
Q  203 tttatatgattaccaatctaatttttagttttaattagcggaaaagaaataagtttgttaa 263  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||| | ||||||||||||    
T  10285844 tttatgtgattaccaatctaatttttagttttgattagctgaaaaggattaagtttgttaa 10285904  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 43270802 - 43270741
Alignment:
Q  32 acttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttccta 93  Q
    |||||||||||||| ||||||||||||| |||| ||||||| ||||||||||| || |||||    
T  43270802 acttgctaactttaacatttttgtggataattttaatttgactgttttggagactcctccta 43270741  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 15155018 - 15154935
Alignment:
Q  211 attaccaatctaatttttagttttaattagcggaaaagaaataagtttgttaacaacaaagtttgtttggtttaaaaatcagat 294  Q
    |||||||||||||||||||||||| |||||  |||||| ||||||||| || | |  |  ||||||||||||||||| ||||||    
T  15155018 attaccaatctaatttttagttttgattagttgaaaaggaataagttttttgagagtagtgtttgtttggtttaaaattcagat 15154935  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 4228349 - 4228439
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| |||||||||| |||| || |||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  4228349 aagtgccgattggcttgctaattttagcatttctgtgaattatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 4228439  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 31371292 - 31371359
Alignment:
Q  308 catgggattgaggttttcatc---atgtttaatccattacattccttatctatttctctattctataa 372  Q
    |||||||||||||||||||||   ||||| ||||  | ||||||| |||||||||||||||| |||||    
T  31371292 catgggattgaggttttcatcataatgttaaatcattgacattccctatctatttctctattttataa 31371359  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 1223001 - 1222911
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| |||||||||| |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  1223001 aagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 1222911  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 330
Target Start/End: Original strand, 20081765 - 20081826
Alignment:
Q  269 aagtttgtttggtttaaaaatcagatgtttaaagagcgtcatgggattgaggttttcatcat 330  Q
    ||||||||||||||||||| ||| |||||||||  ||||  ||||||||  |||||||||||    
T  20081765 aagtttgtttggtttaaaattcaaatgtttaaaaggcgttgtgggattgttgttttcatcat 20081826  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 26381251 - 26381181
Alignment:
Q  56 ggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctcctctttagtgatgttt 126  Q
    |||||||||||||||| |||||||||||| || ||||||||| | |||||||||||| |||  ||||||||    
T  26381251 ggatcatttgaatttgtttgttttggagactcctcctagtgaacttcaaaagctcctatttgatgatgttt 26381181  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 17290207 - 17290297
Alignment:
Q  20 aagtgctgattaacttgctaactttagcatttttgtggatcatttgaatttgattgttttggagagtcttcctagtgaccgtcaaaagctc 110  Q
    |||||| ||||  |||||||| ||||| |||| |||| ||||||||||||||||| ||||||||| || ||||| ||| | || |||||||    
T  17290207 aagtgccgattggcttgctaattttagtatttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 17290297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 29784155 - 29784059
Alignment:
Q  145 agccccgcaagtgcactgttctatcaagtagtaaaaagagtattgatccacatgaaattttatatgattaccaatctaatttttagttttaattagc 241  Q
    ||||||||| ||| || |||| ||  |||||||| |||||||| ||| |||||  | |||||| ||||||||||| ||||||||  |||| ||||||    
T  29784155 agccccgcatgtgtacggttcaatggagtagtaagaagagtatcgatgcacatctagttttatgtgattaccaatttaatttttgattttgattagc 29784059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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