View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_high_4 (Length: 821)

Name: NF5654_high_4
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_high_4
NF5654_high_4
[»] chr5 (6 HSPs)
chr5 (527-803)||(33110687-33110959)
chr5 (290-461)||(33111025-33111196)
chr5 (13-160)||(33111325-33111472)
chr5 (13-149)||(18858737-18858864)
chr5 (540-598)||(33112558-33112616)
chr5 (60-98)||(18861687-18861725)
[»] chr1 (3 HSPs)
chr1 (13-149)||(24316923-24317052)
chr1 (107-149)||(24321069-24321111)
chr1 (60-98)||(24321042-24321080)
[»] chr7 (4 HSPs)
chr7 (13-149)||(15899197-15899324)
chr7 (13-149)||(39011430-39011557)
chr7 (60-149)||(15894751-15894838)
chr7 (107-149)||(39011645-39011687)
[»] chr2 (5 HSPs)
chr2 (13-149)||(2201653-2201781)
chr2 (107-149)||(2206197-2206239)
chr2 (60-98)||(2206170-2206208)
chr2 (544-598)||(21496733-21496787)
chr2 (544-598)||(21562783-21562837)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 527 - 803
Target Start/End: Complemental strand, 33110959 - 33110687
Alignment:
Q  527 gaagtaactaactagtgtcataaccaaagagaaggccaccaataccagcagagaaagcaagtcgaaggacatgaaagagacatacattctctaaaagctg 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110959 gaagtaactaactagtgtcataaccaaagagaaggccaccaataccagcagagaaagcaagtcgaaggacatgaaagagacatacattctctaaaagctg 33110860  T
Q  627 agatatcagcctctggtactccaccttccatcttgtttaattaattttgctaaaattgttgaagttggtgatttatgagagaatcagggaagcatagcaa 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110859 agatatcagcctctggtactccaccttccatcttgtttaattaattttgctaaaattgttgaagttggtgatttatgagagaatcagggaagcatagcaa 33110760  T
Q  727 agtgtgatgagagtggcgcaactagcaatcaatccaatcctatatataggctctttctcaattttctaatggctata 803  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| ||||    
T  33110759 agtgtgatgagagtggcgcaactagcaatcaatccaatcc----tataggctctttctcaattttctaatggatata 33110687  T

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Target: chr5; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 290 - 461
Target Start/End: Complemental strand, 33111196 - 33111025
Alignment:
Q  290 tatgttgttttttatatagaaatggagatgattccgatgaggcaaagnnnnnnnncatttgtttcttggcagtttagatgaaaataatggaaatgaagaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  33111196 tatgttgttttttatatagaaatggagatgattccgatgagtcaaagaaaaaaaacatttgtttcttggcagtttagatgaaaataatggaaatgaagaa 33111097  T
Q  390 gagtaagtacctgaagccatgtctttgaaatcatctctgatatataatagcgccccagatatgactcctaca 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33111096 gagtaagtacctgaagccatgtctttgaaatcatctctgatatataatagcgccccagatatgactcctaca 33111025  T

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Target: chr5; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 33111472 - 33111325
Alignment:
Q  13 gagaagaaggagaagaattagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33111472 gagaagaaggagaagaattagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatggcacatgacattgtcatatgtca 33111373  T
Q  113 catgactcacttaagtgataatttaatctcagtcatttaatctgaagg 160  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||    
T  33111372 catgactcacttaagtgataatttaatctcaaccatttaatctgaagg 33111325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 18858864 - 18858737
Alignment:
Q  13 gagaagaaggagaagaattagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtca 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||  || ||||||||||| ||||||||||       |||||    
T  18858864 gagaagaaggagaagatttagggcgggagttatttctgattgtggaggagagagaa--ttgttttggaatgagaatggcacatgacat-------tgtca 18858774  T
Q  113 catgactcacttaagtgataatttaatctcagtcatt 149  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  18858773 catgactgacttaagtgataatttaatctcagccatt 18858737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 598
Target Start/End: Complemental strand, 33112616 - 33112558
Alignment:
Q  540 agtgtcataaccaaagagaaggccaccaataccagcagagaaagcaagtcgaaggacat 598  Q
    |||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  33112616 agtgtcgtagccaaagagaaggccaccaataccagcagaaaaagcaagacgaaggacat 33112558  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 18861687 - 18861725
Alignment:
Q  60 gagagagaaagttgaatttgaatgagaatgacacatgac 98  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  18861687 gagagagaaagttgaattggaatgagaatggcacatgac 18861725  T

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Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 24317052 - 24316923
Alignment:
Q  13 gagaagaaggagaagaattagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtca 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||       | |||    
T  24317052 gagaagaaggagaagatttagggcgggagttatttctgattgtggaggagagagaaagttgaattggaatgagaatggcacatgacat-------tatca 24316960  T
Q  113 catgactcacttaagtgataatttaatctcagtcatt 149  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24316959 catgactcacttaagtgataatttaatctcagccatt 24316923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 24321069 - 24321111
Alignment:
Q  107 atgtcacatgactcacttaagtgataatttaatctcagtcatt 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  24321069 atgtcacatgactcacttaagtgataatttaatctcagccatt 24321111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 24321042 - 24321080
Alignment:
Q  60 gagagagaaagttgaatttgaatgagaatgacacatgac 98  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  24321042 gagagagaaagttgaattggaatgagaatgtcacatgac 24321080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 15899197 - 15899324
Alignment:
Q  13 gagaagaaggagaagaattagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtca 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||  || ||||||||||| ||||||||||       |||||    
T  15899197 gagaagaaggagaagatttagggcgggagttatttctgattgtggaggagagagaa--ttgttttggaatgagaatggcacatgacat-------tgtca 15899287  T
Q  113 catgactcacttaagtgataatttaatctcagtcatt 149  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15899288 catgactcacttaagtgataatttaatctcagccatt 15899324  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 39011430 - 39011557
Alignment:
Q  13 gagaagaaggagaagaattagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtca 112  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||  |||  || || |||||||||||||||||||       |||||    
T  39011430 gagaagaaggagaagatttagggcgggagttatttctgattatggaggagagataa--ttgttttggattgagaatgacacatgacat-------tgtca 39011520  T
Q  113 catgactcacttaagtgataatttaatctcagtcatt 149  Q
    || ||||||||||||||||||||||||||||| ||||    
T  39011521 cacgactcacttaagtgataatttaatctcagccatt 39011557  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 15894838 - 15894751
Alignment:
Q  60 gagagagaaagttgaatttgaatgagaatgacacatgacattgtcatatgtcacatgactcacttaagtgataatttaatctcagtcatt 149  Q
    |||||||||||||||||| ||||||||||| |||||||| |||  | ||| ||||||||| |||||||||||||||||||||||| ||||    
T  15894838 gagagagaaagttgaattggaatgagaatggcacatgac-ttgaga-atgacacatgactaacttaagtgataatttaatctcagccatt 15894751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 39011687 - 39011645
Alignment:
Q  107 atgtcacatgactcacttaagtgataatttaatctcagtcatt 149  Q
    |||||||  ||||||||||||||||||||||||||||| ||||    
T  39011687 atgtcacgggactcacttaagtgataatttaatctcagccatt 39011645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 2201781 - 2201653
Alignment:
Q  13 gagaagaaggagaagaattagggcgggagttatttctgattgtggaggagagagaaagttgaatttgaatgagaa-tgacacatgacattgtcatatgtc 111  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||  |||  || ||||||||| || ||||||||||       ||||    
T  2201781 gagaagaaggggaagatttagggcgggagttatttctgattgtggaggagagagaa--ttgttttggaatgagaattggcacatgacat-------tgtc 2201691  T
Q  112 acatgactcacttaagtgataatttaatctcagtcatt 149  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  2201690 acatgactcacttaagtgataatttaatctcagccatt 2201653  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 2206197 - 2206239
Alignment:
Q  107 atgtcacatgactcacttaagtgataatttaatctcagtcatt 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  2206197 atgtcacatgactcacttaagtgataatttaatctcagccatt 2206239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 2206170 - 2206208
Alignment:
Q  60 gagagagaaagttgaatttgaatgagaatgacacatgac 98  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  2206170 gagagagaaagttgaattggaatgagaatgtcacatgac 2206208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 598
Target Start/End: Original strand, 21496733 - 21496787
Alignment:
Q  544 tcataaccaaagagaaggccaccaataccagcagagaaagcaagtcgaaggacat 598  Q
    ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||    
T  21496733 tcatagccaaaaagaaggccaccaattccagcagaaaaagcaagacgaagaacat 21496787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 598
Target Start/End: Original strand, 21562783 - 21562837
Alignment:
Q  544 tcataaccaaagagaaggccaccaataccagcagagaaagcaagtcgaaggacat 598  Q
    ||||| ||||||||||  |||||||| ||||||||||||||||| ||||| ||||    
T  21562783 tcatagccaaagagaaaaccaccaattccagcagagaaagcaagacgaagaacat 21562837  T

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