View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_high_8 (Length: 478)
Name: NF5654_high_8
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 116 - 459
Target Start/End: Original strand, 5051697 - 5052046
Alignment:
| Q |
116 |
cgttcactgaattggagctgtgagatta------agaagcgctttgcgatggatttgcatctcactcctgtcttgtatggacacgactccatatctccat |
209 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051697 |
cgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatctcactcctgtcttgtatggacacgactccatatctccat |
5051796 |
T |
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| Q |
210 |
ccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaattttaattggataat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5051797 |
ccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtatgttcacgagctattacctaccaaatttaaattggataat |
5051896 |
T |
|
| Q |
310 |
ggattttgatacttagttgaacaattatgatagccctttgcccaactgttaaattatgtattattgctgacttgattgatcccggccccaatcacgagga |
409 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
5051897 |
tgattctgatacttagttgaacaattatgatagccctttgcccaactgtcaaattatgtattgttgctgacttgattgatcccggccccgatcacgagga |
5051996 |
T |
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| Q |
410 |
gaagattgaggggacatgacatttgatatctattagttgtgtactttaac |
459 |
Q |
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| T |
5051997 |
gaagattgaggggacatgacatttgatatctattagttgtgtactttaac |
5052046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 115 - 328
Target Start/End: Complemental strand, 51273673 - 51273452
Alignment:
| Q |
115 |
tcgttcactgaattggagctgtgagattaa------gaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctcc |
207 |
Q |
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| T |
51273673 |
tcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagatggatttgcaactcactgctgtcttgtacgaaacacgactccatatctct |
51273574 |
T |
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| Q |
208 |
atccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattg-tatgttcacgagctattacctaccaaattttaattggat |
306 |
Q |
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||| ||| |||||||||||| ||||||||||||||| ||||||||||||||| | |||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
51273573 |
atcaataaatcatctgataaattctccatgttgattttagtatatattgctagaatattgttatgttcaagagctataagctaccaaattttaattggat |
51273474 |
T |
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| Q |
307 |
aatggattttgatacttagttg |
328 |
Q |
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||| |||| |||||||| |||| |
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| T |
51273473 |
aatcgattctgatacttggttg |
51273452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 29140652 - 29140743
Alignment:
| Q |
18 |
agtttcttcaaaatatgttatcaaactatcaaagataatttatgtgcatggattatataatccatttgtaggaattggagcctatcacaggt |
109 |
Q |
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| T |
29140652 |
agtttcttcaaaatatgttatcaaactatcaaagataatttatgtgcatggattatataatccatttgtatgaattggagcctatcacaggt |
29140743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 259
Target Start/End: Complemental strand, 14907717 - 14907599
Alignment:
| Q |
142 |
taagaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttg |
240 |
Q |
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||||| |||||||| |||||||||| | |||||| ||| ||||||| | ||||| ||||| |||| ||| ||| |||||||||||| |||||||||||| |
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| T |
14907717 |
taagatgcgctttgagatggatttgtaactcactgatgttttgtatgaaacacgaatccatgtctctatcaataaatcatctgataaattctccatgttg |
14907618 |
T |
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| Q |
241 |
attgtagtatatattgcta |
259 |
Q |
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||| |||||||||||||| |
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| T |
14907617 |
atttaagtatatattgcta |
14907599 |
T |
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