View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_low_11 (Length: 429)
Name: NF5654_low_11
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 48889093 - 48888696
Alignment:
| Q |
20 |
attagaggtgtagtttcacttttatgtttgatatgggcattgatgacagaacagctgaacataaaatgtatctattggttattttttaagcttgacaatt |
119 |
Q |
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| T |
48889093 |
attagaggtgtagtttcacttttatgtttgatatgggcatcgatgacagaacagctgaatataaaatgtatctattggttattttttaagcttgacaatt |
48888994 |
T |
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| Q |
120 |
gaagagcccatatgatgataatgattagttatgacacatatatatcagttaccttgttgtcaaatccagaagtaacaacttcttcttcagcagctgctaa |
219 |
Q |
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| T |
48888993 |
gaagagcccatatgatgataatgattagttatgacacatatatatcagttaccttgttgtcaaatccagaagtaacaacttcttcttcagcagctgctaa |
48888894 |
T |
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| Q |
220 |
caatttgattaatccaaattgtttactgtcaaacttaccactatagccaatgcctggaatccatctaatgatcactccatcatagctgctagacaaaagc |
319 |
Q |
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| T |
48888893 |
caatttgattaatccaaattgtttactgtcaaacttaccactatagccaatgcctggaatccatctaatgatcactccatcatagctgctagacaaaagc |
48888794 |
T |
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| Q |
320 |
atcttttcacttttgttgagcagattcaaaacagtgatattcttcatgtgaccagataaggactttgggctttgatctagatccttagcagagtataa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48888793 |
atcttttcacttttgttgagcagattcaaaacagtgatattcttcatgtgaccagataaggactttgggctttgatctagatccttagcagagtataa |
48888696 |
T |
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