View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_low_12 (Length: 422)
Name: NF5654_low_12
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 42185019 - 42184616
Alignment:
| Q |
16 |
gatggaagtaacattgcttggccttagaacttcagctagtggaccaccaggtgttgaacctaaccaaggttgtgctgaattgagccaatttgataatgct |
115 |
Q |
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| T |
42185019 |
gatggaagtaacattgcttggccttagaacttcagctagtggaccaccaggtgttgaacctaaccaaggttgtgctgaattgagccaatttgataatgct |
42184920 |
T |
|
| Q |
116 |
attttattactatcatcgtcacccgcagcattcatttcaatagtactcatttcttcactcacggcactacctcccattgatagatcaagtgatgaaaggg |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184919 |
attttagtactatcatcgtcacccgcagcattcatttcaatagtactcatttcttcactcacggcactacctcccattgatagatcaagtgatgaaaggg |
42184820 |
T |
|
| Q |
216 |
ataatttaccaactgatgcagaaccattgttggaggtggtggtggtgttggcattgttttccactgtctctgtatt------------aatgaaactaaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42184819 |
ataatttaccaactgatgcagaaccattgttggaggtggtggtggtgttggcattgttttccactgtctctgtattagaccaagcatcaatgaaactaaa |
42184720 |
T |
|
| Q |
304 |
acctcttggtttctcagattggagagttcgcattggaacaacaaggggattaagtaagagaggaaagggtttttcatgttgagctagttcagaactgtta |
403 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42184719 |
acctcttggtttctcagattggagagtttgcattggaacaacaaggggattaagtaagagaggaaagggtttttcatgttgagctagttcagaactgtta |
42184620 |
T |
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| Q |
404 |
tata |
407 |
Q |
| |
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|||| |
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| T |
42184619 |
tata |
42184616 |
T |
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