View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_low_13 (Length: 402)

Name: NF5654_low_13
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_low_13
NF5654_low_13
[»] chr2 (18 HSPs)
chr2 (1-382)||(16209712-16210093)
chr2 (1-201)||(16212118-16212309)
chr2 (150-279)||(31915043-31915172)
chr2 (154-268)||(38373344-38373458)
chr2 (162-284)||(29140170-29140295)
chr2 (160-284)||(8033265-8033387)
chr2 (138-237)||(19028478-19028582)
chr2 (166-295)||(13832204-13832333)
chr2 (160-267)||(31921234-31921340)
chr2 (161-305)||(29794679-29794822)
chr2 (138-294)||(34466969-34467124)
chr2 (166-265)||(4818746-4818843)
chr2 (138-288)||(30554505-30554660)
chr2 (153-222)||(34463357-34463427)
chr2 (160-237)||(35005217-35005294)
chr2 (160-268)||(12800780-12800887)
chr2 (213-288)||(37519659-37519733)
chr2 (228-266)||(16212073-16212111)
[»] chr4 (24 HSPs)
chr4 (138-306)||(16502384-16502551)
chr4 (161-304)||(33395332-33395475)
chr4 (160-265)||(37858200-37858306)
chr4 (212-306)||(2392556-2392650)
chr4 (160-304)||(11086265-11086413)
chr4 (150-288)||(41259992-41260130)
chr4 (160-304)||(37626714-37626858)
chr4 (161-288)||(53654292-53654419)
chr4 (161-268)||(14124199-14124306)
chr4 (161-244)||(34341419-34341502)
chr4 (163-293)||(21865189-21865318)
chr4 (163-293)||(21921050-21921179)
chr4 (170-304)||(41163046-41163180)
chr4 (162-270)||(51088905-51089013)
chr4 (161-288)||(48497414-48497536)
chr4 (133-183)||(388467-388517)
chr4 (212-270)||(32906123-32906181)
chr4 (236-306)||(48582248-48582318)
chr4 (165-307)||(52837916-52838058)
chr4 (241-293)||(4066380-4066432)
chr4 (272-308)||(27923944-27923980)
chr4 (212-279)||(37645330-37645395)
chr4 (138-257)||(47519252-47519372)
chr4 (212-279)||(53650087-53650155)
[»] chr3 (11 HSPs)
chr3 (162-301)||(3432610-3432749)
chr3 (160-288)||(42005345-42005473)
chr3 (160-304)||(54153866-54154010)
chr3 (160-304)||(4195303-4195447)
chr3 (160-306)||(32375191-32375338)
chr3 (153-304)||(51312863-51313014)
chr3 (162-304)||(44765246-44765388)
chr3 (161-281)||(20137571-20137688)
chr3 (178-219)||(29398315-29398356)
chr3 (219-312)||(11529273-11529366)
chr3 (160-268)||(47510743-47510851)
[»] chr7 (12 HSPs)
chr7 (167-304)||(23070192-23070329)
chr7 (163-243)||(45411263-45411343)
chr7 (160-249)||(12139818-12139903)
chr7 (161-307)||(25240273-25240419)
chr7 (212-289)||(3338444-3338521)
chr7 (169-310)||(40024145-40024286)
chr7 (212-282)||(40019468-40019538)
chr7 (160-243)||(31245263-31245346)
chr7 (162-252)||(7833551-7833641)
chr7 (161-249)||(22680724-22680812)
chr7 (161-257)||(31860303-31860399)
chr7 (162-221)||(21946153-21946212)
[»] chr6 (8 HSPs)
chr6 (162-275)||(23131444-23131557)
chr6 (161-304)||(29694302-29694445)
chr6 (129-288)||(2838965-2839123)
chr6 (161-265)||(7592723-7592827)
chr6 (248-322)||(30699747-30699821)
chr6 (160-283)||(6454542-6454662)
chr6 (220-288)||(31490408-31490476)
chr6 (159-268)||(27673689-27673797)
[»] chr8 (12 HSPs)
chr8 (160-288)||(34653276-34653403)
chr8 (165-301)||(3423745-3423881)
chr8 (176-318)||(24334458-24334600)
chr8 (138-249)||(13636215-13636326)
chr8 (138-249)||(13736628-13736739)
chr8 (208-309)||(22488846-22488947)
chr8 (166-304)||(41168600-41168739)
chr8 (166-284)||(41086814-41086932)
chr8 (212-270)||(39753144-39753204)
chr8 (177-265)||(44167177-44167265)
chr8 (161-227)||(29374562-29374628)
chr8 (128-249)||(8488600-8488724)
[»] chr5 (17 HSPs)
chr5 (160-295)||(26401989-26402124)
chr5 (160-307)||(42641111-42641258)
chr5 (167-275)||(10418601-10418709)
chr5 (161-276)||(7611938-7612053)
chr5 (160-282)||(12487099-12487222)
chr5 (162-288)||(30251942-30252068)
chr5 (138-288)||(33085251-33085401)
chr5 (160-304)||(1637949-1638093)
chr5 (161-304)||(7736298-7736441)
chr5 (212-313)||(35626636-35626737)
chr5 (162-304)||(14156967-14157109)
chr5 (129-210)||(8716395-8716476)
chr5 (160-227)||(25731214-25731281)
chr5 (153-187)||(20078356-20078390)
chr5 (153-231)||(34023285-34023363)
chr5 (162-261)||(35980692-35980792)
chr5 (162-279)||(40132379-40132496)
[»] chr1 (16 HSPs)
chr1 (160-257)||(8772420-8772517)
chr1 (182-322)||(9552818-9552958)
chr1 (153-288)||(2193257-2193392)
chr1 (161-290)||(46536647-46536776)
chr1 (160-304)||(12188631-12188775)
chr1 (161-304)||(26701501-26701644)
chr1 (166-284)||(30264064-30264187)
chr1 (161-304)||(44603626-44603769)
chr1 (138-256)||(7330518-7330636)
chr1 (161-283)||(29020085-29020207)
chr1 (138-206)||(17969342-17969410)
chr1 (171-284)||(30350733-30350846)
chr1 (234-306)||(21824234-21824306)
chr1 (237-295)||(42724007-42724065)
chr1 (161-260)||(19703787-19703887)
chr1 (243-307)||(49731133-49731196)
[»] scaffold0007 (1 HSPs)
scaffold0007 (160-249)||(246541-246630)
[»] scaffold0265 (2 HSPs)
scaffold0265 (234-306)||(3615-3687)
scaffold0265 (234-306)||(8504-8576)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 16210093 - 16209712
Alignment:
Q  1 aaaaatcttgcagcttgtttaataacaaaatcaagacaaaaatccagaacattctacaatttgttcaacagtcaaaacaatccagcaccctcatagtaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16210093 aaaaatcttgcagcttgtttaataacaaaatcaagacaaaaatccagaacattctacaatttgttcaacagtcaaaacaacccagcaccctcatagtaac 16209994  T
Q  101 ccaagcaagtggagtcaacaccattaaattttagaataatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaa 200  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16209993 ccaagcaagtggagtcaacacgattaaattttagaagaatgctaatgagtgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaa 16209894  T
Q  201 agttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgatta 300  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  16209893 agttgtgtaactattgctaagacaaaagtaaacacttgtatttccaaaacaaagtttctactattggatttcttaaccattgcccttaagacactgatta 16209794  T
Q  301 gcaaaactctaatttttatagtctcacatattcaccattattagtgtagcattatttataggatcgtgttacatcctctgtc 382  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16209793 gcaaaaccctaatttttatagtctcacatattcaccattattagtgtagcattatttataggatcgtgttacatcctctgtc 16209712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 16212309 - 16212118
Alignment:
Q  1 aaaaatcttgcagcttgtttaataacaaaatcaagacaaaaatccagaacattctacaatttgttcaacagtcaaaacaatccagcaccctcatagtaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||  || | |||||||||||||    
T  16212309 aaaaatcttgcagcttgtttaataacaaaatcaagacaaaaat---------tctacaatttgttcaacaatcaaaacaacacaaccccctcatagtaac 16212219  T
Q  101 ccaagcaagtggagtcaacaccattaaattttagaataatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaa 200  Q
    |||||||| ||||||||||||| |||| |||||| | |||||||| || || |||||  |||||| ||| | || |||||||||||||||| ||| ||||    
T  16212218 ccaagcaattggagtcaacaccgttaatttttaggagaatgctaacgagtgcccttggggcattgattacaatattaaaataagtaactttgaaataaaa 16212119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 31915172 - 31915043
Alignment:
Q  150 tgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaaga 249  Q
    ||||||||  ||||||||||||||| |||||||||||| |||  | | |||||| || ||| |||| ||| || ||||||||| ||||||||||||||||    
T  31915172 tgtccttggggcattggttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaattatttctatgaaaaaagtaaagacttgtattttcaaga 31915073  T
Q  250 taaagtttctactaatggatttcttaacca 279  Q
     |||||||||| ||||||| | ||||||||    
T  31915072 caaagtttctattaatggaatccttaacca 31915043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 38373458 - 38373344
Alignment:
Q  154 cttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaa 253  Q
    |||| ||||||||||||| || |||||||||||| |||  | | |||| | || ||| ||||||||||| ||||||||| |||||||||| |||||||||    
T  38373458 cttggagcattggttaaaatattaaaataagtaaatttgcatcgaaaaatggtgtaattattgctaagataaaagtaaaaacttgtatttccaagataaa 38373359  T
Q  254 gtttctactaatgga 268  Q
    ||||||| |||||||    
T  38373358 gtttctattaatgga 38373344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 29140170 - 29140295
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaac-aaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||||||||||||||| ||| |||| ||||| |||| ||| ||||||||||  |||| |||| ||||||||||||| || ||| ||||||    
T  29140170 attggttaaagtactaaaataagtaattttgaaacaaaaaaattgtgtaattattgctaaggaaaaaataaaaacttgtattttcaggacaaaatttcta 29140269  T
Q  261 ctaatgg--atttcttaaccattgtc 284  Q
     | ||||  ||| |||||||||||||    
T  29140270 tttatggatattccttaaccattgtc 29140295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 8033387 - 8033265
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    ||||||||||||||| |||||||||||| |||  | | |||||| || ||| ||||| ||| | ||||||||| ||||||||||||||||||||||||||    
T  8033387 gcattggttaaagtattaaaataagtaaatttgcatcgaaaagtggtgtaattattgataaaa-aaaagtaaa-acttgtattttcaagataaagtttct 8033290  T
Q  260 actaatggatttcttaaccattgtc 284  Q
    | ||||| | | ||||| |||||||    
T  8033289 attaatgaaatccttaatcattgtc 8033265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 19028582 - 19028478
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataa-----gtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaa 232  Q
    ||||||||||| ||| ||||  ||||||||||||||||||||||||     ||||||||  ||||||||||||| ||| |||| ||||||||||||||||    
T  19028582 aatgctaatgagtgttcttggggcattggttaaagtactaaaataaaataagtaactttgcaacaaaaagttgtgtaattattactaagacaaaagtaaa 19028483  T
Q  233 cactt 237  Q
     ||||    
T  19028482 aactt 19028478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 295
Target Start/End: Original strand, 13832204 - 13832333
Alignment:
Q  166 gttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaat 265  Q
    |||||||| ||||||||||||| |||  | |||||   ||| | | ||||||||||||||||||||| | ||||||||| || ||||| ||||||  ||     
T  13832204 gttaaagttctaaaataagtaattttgcatcaaaagactgtgtgattattgctaagacaaaagtaaaaatttgtatttttaaaataaaatttctatcaaa 13832303  T
Q  266 ggatttcttaaccattgtccttaagacact 295  Q
    | ||||||||| || |||||||||||||||    
T  13832304 gaatttcttaatcaatgtccttaagacact 13832333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 267
Target Start/End: Original strand, 31921234 - 31921340
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    ||||||||||||||||| |||||||||| |||    | |||||| || |||  |||||||||| |||| |||| |||||||||||||||| |||||||||    
T  31921234 gcattggttaaagtacttaaataagtaagtttgcctcgaaaagtggtgtaatgattgctaagaaaaaa-taaatacttgtattttcaagacaaagtttct 31921332  T
Q  260 actaatgg 267  Q
    | ||||||    
T  31921333 attaatgg 31921340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 305
Target Start/End: Original strand, 29794679 - 29794822
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||| |||||| ||||||| |||||||| |||||||||| || ||| ||||| | | ||||||||||| |||  ||||||  | | ||| ||| ||    
T  29794679 cattggttgaagtacaaaaataaataactttacaacaaaaagtcgtgtaattattggttaaacaaaagtaaaaactgatatttttgacacaaaattttta 29794778  T
Q  261 ctaatggatttcttaaccattgtccttaagacactgattagcaaa 305  Q
    |||||| |||| ||||||| || ||||||  || |||||||||||    
T  29794779 ctaatgaattt-ttaaccaatgcccttaaatcaatgattagcaaa 29794822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 34467124 - 34466969
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacactt 237  Q
    ||||||||  ||| |||||| |||||| ||||||||| |||||||||||| |||| || | |||||||| ||| ||||||||| |  ||| |||| | ||    
T  34467124 aatgctaacaaatatccttgaagcattagttaaagtattaaaataagtaaatttataatataaagttgtgtaattattgctaaca-taaactaaaaattt 34467026  T
Q  238 gtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacac 294  Q
      |||||||| | ||| ||| |||||||| |||||||||| ||| || ||| |||||    
T  34467025 acattttcaaaacaaattttttactaatgaatttcttaactattatctttaggacac 34466969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 4818843 - 4818746
Alignment:
Q  166 gttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaat 265  Q
    |||||||||||||||||||||||||| ||| ||||| |||| ||| ||||  ||||| ||||||||| ||||| |||| ||||  ||| |||||||||||    
T  4818843 gttaaagtactaaaataagtaactttgaaataaaaa-ttgtgtaattattattaagataaaagtaaaaacttgaatttccaag-caaaatttctactaat 4818746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 288
Target Start/End: Original strand, 30554505 - 30554660
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaa-----aacaaaaagttgtttaactattgctaagacaaaagtaaa 232  Q
    ||||||||||| |||| |||   ||||||||||| || |||||||||| |||||||     |||||||| |||| ||| || || |||||||||||||||    
T  30554505 aatgctaatgagtgtctttgggtcattggttaaaatattaaaataagttactttaatttgcaacaaaaaattgtgtaattaatgttaagacaaaagtaaa 30554604  T
Q  233 cacttgtattttcaagataaagtttctactaatggatttcttaaccattgtcctta 288  Q
     |  || |||||||||| | | ||||||||||| |||| ||| | || ||||||||    
T  30554605 aatgtgcattttcaagacataatttctactaatagattccttcatcaatgtcctta 30554660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 34463427 - 34463357
Alignment:
Q  153 ccttgtagcattggttaaagtactaaaataagtaa-ctttaaaacaaaaagttgtttaactattgctaaga 222  Q
    ||||| || ||| ||||||||||||||||||||||  ||||||| |||||||||| ||| |||||||||||    
T  34463427 ccttgaagtattagttaaagtactaaaataagtaatttttaaaataaaaagttgtgtaattattgctaaga 34463357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 35005217 - 35005294
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacactt 237  Q
    |||||||||||||||||||||||||||| |||  | | |||||| || |||  |||||||||| ||||||||| ||||    
T  35005217 gcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaagactt 35005294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 12800780 - 12800887
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    ||||||||||||||| ||| |||||||| |||  | | |||| | || ||| ||||| ||||| ||||||||| | || ||||||||||| |||||||||    
T  12800780 gcattggttaaagtattaagataagtaaatttgtatcgaaaattggtctaattattgttaagaaaaaagtaaa-atttatattttcaagacaaagtttct 12800878  T
Q  260 actaatgga 268  Q
    | |||||||    
T  12800879 attaatgga 12800887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 288
Target Start/End: Complemental strand, 37519733 - 37519659
Alignment:
Q  213 attgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtcctta 288  Q
    |||| ||||| ||| ||||| |||||||||| ||||| ||||||| || ||||||| | |||||||||||||||||    
T  37519733 attgttaagaaaaaggtaaagacttgtattt-caagacaaagtttatattaatggaatccttaaccattgtcctta 37519659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 16212111 - 16212073
Alignment:
Q  228 gtaaacacttgtattttcaagataaagtttctactaatg 266  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  16212111 gtaaaaacttgtattttcaagataaagtttttactaatg 16212073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 138 - 306
Target Start/End: Complemental strand, 16502551 - 16502384
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacactt 237  Q
    ||||||||||| || |||||  |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||| |||| |||| | ||    
T  16502551 aatgctaatgagtgcccttggggcattggttaaagtactaaaataagtaactctaaaacaaaaagttgtgtaaatattgccaagagaaaa-taaaaattt 16502453  T
Q  238 gtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaa 306  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||| ||||| | ||||| |||||||||    
T  16502452 gtatttccaagacaaagtttctactaatggattccttaaccattgcccttagggcactggttagcaaaa 16502384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 304
Target Start/End: Original strand, 33395332 - 33395475
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||| |||||| ||||| |||| | |||||||| || ||| ||||||||||| | ||||||| |||||||||| |||||||||||||| |    
T  33395332 cattggttaaagtattaaaatgagtaagtttacatcaaaaagtggtataattattgctaagaaataagtaaagacttgtatttccaagataaagtttcca 33395431  T
Q  261 ctaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
     || |||| |  |||||||||| ||||| | | |||||||||||    
T  33395432 ttattggaatcattaaccattgcccttagggccctgattagcaa 33395475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 37858200 - 37858306
Alignment:
Q  160 gcattggttaaagtacta-aaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttc 258  Q
    |||||||||||||||||| ||||||| || |||  | | ||||||  ||||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  37858200 gcattggttaaagtactataaataaggaagtttgcatcgaaaagtgatttaattattgctaagaaaaaagtaaaaacttgtattttcaagataaagtttc 37858299  T
Q  259 tactaat 265  Q
    || ||||    
T  37858300 tattaat 37858306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 306
Target Start/End: Complemental strand, 2392650 - 2392556
Alignment:
Q  212 tattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaa 306  Q
    |||||| |||||||||||||| ||||| |||| ||||| |||||||||||||||||||| |||||||| ||  |||| | ||||| |||||||||    
T  2392650 tattgccaagacaaaagtaaaaacttgcatttacaagacaaagtttctactaatggattccttaaccaatgctcttagggcactggttagcaaaa 2392556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 11086265 - 11086413
Alignment:
Q  160 gcattggttaaagtactaaaataagtaacttt--aaaacaaaaagtt--gtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagt 255  Q
    ||||||||||||||| |||||||||||| |||  | || ||||| ||  || ||| ||||||||||| ||||||||| | |||||||| |||||||||||    
T  11086265 gcattggttaaagtattaaaataagtaagtttgtataaaaaaaaattaggtataaatattgctaagaaaaaagtaaagatttgtatttccaagataaagt 11086364  T
Q  256 ttctactaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    | ||| ||||| | | ||||||||||| ||||| | ||||| |||||||    
T  11086365 tcctattaatgaaatccttaaccattgcccttagggcactggttagcaa 11086413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 288
Target Start/End: Complemental strand, 41260130 - 41259992
Alignment:
Q  150 tgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaaga 249  Q
    ||||||||  |||| |||||||||| |||||||||||| |||  | | |||||| || |||  |||| ||| | |||| |||| ||||||||||||||||    
T  41260130 tgtccttggtgcatcggttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaatcattgataaaaaaaaaataaagacttgtattttcaaga 41260031  T
Q  250 taaagtttctactaatggatttcttaaccattgtcctta 288  Q
     |||||||||| ||||||| | ||||||||||| |||||    
T  41260030 caaagtttctattaatggaatccttaaccattgccctta 41259992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 37626714 - 37626858
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||||||||||||||||||||||||| |||  | | |||||| || | |  |||| ||||| ||||||||| |||||||||| ||||| ||||||| |    
T  37626714 gcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtgatcattgataagaaaaaagtaaagacttgtatttccaagacaaagtttat 37626813  T
Q  260 actaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    | ||||| | | ||||||||||| ||| | ||||||  |||||||    
T  37626814 attaatgaaatccttaaccattgccctcaggacactagttagcaa 37626858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 53654292 - 53654419
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||| |||||||||||  |||  | | |||| | || ||| |||||| |||| ||||||||| |||||||||| ||||| ||||||||||    
T  53654292 cattggttaaagtattaaaataagtatgtttgcatcgaaaaatggtgtaattattgcgaagaaaaaagtaaagacttgtatttacaagacaaagtttcta 53654391  T
Q  261 ctaatggatttcttaaccattgtcctta 288  Q
     | ||||| || ||||||||| ||||||    
T  53654392 tttatggaatttttaaccattatcctta 53654419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 14124199 - 14124306
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||| |||||||||||| |||  | | |||| | || ||| | ||||||||| ||||||||| |||| ||||| ||| | ||||||||||    
T  14124199 cattggttaaagtattaaaataagtaaatttgcatcgaaaaatggtgtaatttttgctaagaaaaaagtaaaaacttatatttccaaaacaaagtttcta 14124298  T
Q  261 ctaatgga 268  Q
     |||||||    
T  14124299 ttaatgga 14124306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 34341419 - 34341502
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtatttt 244  Q
    ||||||||||||| || ||||| |||| |||  |  |||||||||| ||| |||||||||||||||||||||  ||||||||||    
T  34341419 cattggttaaagttctcaaatatgtaagtttgtattaaaaagttgtgtaattattgctaagacaaaagtaaaatcttgtatttt 34341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 21865189 - 21865318
Alignment:
Q  163 ttggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctact 262  Q
    |||||||||||  |||||||||||| |||  | | |||| | || |||  |||||||||| ||||||||| | |||||||| ||||||||| || ||| |    
T  21865189 ttggttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtatttccaagataaaattactatt 21865287  T
Q  263 aatggatttcttaaccattgtccttaagaca 293  Q
    |||||| | ||||| ||||| ||||||||||    
T  21865288 aatggaatccttaagcattgaccttaagaca 21865318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 293
Target Start/End: Original strand, 21921050 - 21921179
Alignment:
Q  163 ttggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctact 262  Q
    |||||||||||  |||||||||||| |||  | | |||| | || |||  |||||||||| ||||||||| | |||||||| ||||||||| || ||| |    
T  21921050 ttggttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtatttccaagataaaattactatt 21921148  T
Q  263 aatggatttcttaaccattgtccttaagaca 293  Q
    |||||| | ||||| ||||| ||||||||||    
T  21921149 aatggaatccttaagcattgaccttaagaca 21921179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 304
Target Start/End: Original strand, 41163046 - 41163180
Alignment:
Q  170 aagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggat 269  Q
    |||||||||||||||| | |||| | | |||||| || ||| ||||||||||| ||||||||| ||||||||||  |||| ||  ||| || |||| ||     
T  41163046 aagtactaaaataagttagtttacatcgaaaagtggtgtaattattgctaagaaaaaagtaaatacttgtatttctaagacaacatttttattaatagaa 41163145  T
Q  270 ttcttaaccattgtccttaagacactgattagcaa 304  Q
    |  |||||||||||| ||| | ||||| |||||||    
T  41163146 tgtttaaccattgtctttagggcactggttagcaa 41163180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 270
Target Start/End: Original strand, 51088905 - 51089013
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctac 261  Q
    |||||||| |||||||||||||||||||||  || ||||| |||| ||| ||||  ||||| ||||||||| | ||  |||||||| ||| | ||| ||     
T  51088905 attggttagagtactaaaataagtaactttgtaataaaaaattgtgtaattatttgtaagataaaagtaaaaatttacattttcaacatataatttttat 51089004  T
Q  262 taatggatt 270  Q
    |||||||||    
T  51089005 taatggatt 51089013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 48497414 - 48497536
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    ||||| |||||||| |||||||| ||| |||  | | |||||| || |||  |||| ||||| |||| |||| |||||||||||||||| ||||||| ||    
T  48497414 cattgattaaagtattaaaataaataagtttgtatcgaaaagtggtataatcattgataagaaaaaaataaagacttgtattttcaagacaaagttttta 48497513  T
Q  261 ctaatggatttcttaaccattgtcctta 288  Q
     ||||||     ||||||||||||||||    
T  48497514 ttaatgg-----ttaaccattgtcctta 48497536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 388517 - 388467
Alignment:
Q  133 agaataatgctaatgaatgtccttgtagcattggttaaagtactaaaataa 183  Q
    ||||||||| |||| | ||||||||  ||||||||||||||||||||||||    
T  388517 agaataatgttaatcattgtccttggggcattggttaaagtactaaaataa 388467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 32906181 - 32906123
Alignment:
Q  212 tattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatt 270  Q
    |||||||||||||||| |||| |||| ||||| ||||||||| |||| | |||||||||    
T  32906181 tattgctaagacaaaaataaaaacttatatttacaagataaactttccattaatggatt 32906123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 48582248 - 48582318
Alignment:
Q  236 ttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaa 306  Q
    ||||||||||||||||||||||||| ||||| | | |||||| ||||  ||||||| |||  |||||||||    
T  48582248 ttgtattttcaagataaagtttctattaatgaaatccttaacaattgcacttaagatactagttagcaaaa 48582318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 52838058 - 52837916
Alignment:
Q  165 ggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaa 264  Q
    |||||||||| |||||||||||| |||  | | |||| | || ||| ||||| ||||| ||||||||| || ||||||| ||| |||| ||||||| |||    
T  52838058 ggttaaagtattaaaataagtaagtttgcatcgaaaaatggtataattattgttaagaaaaaagtaaagacatgtatttccaaaataatgtttctattaa 52837959  T
Q  265 tggatttcttaaccattgtccttaagacactgattagcaaaac 307  Q
    || | |  |||||||||| || || |||| ||  |||||||||    
T  52837958 tgaaatctttaaccattgcccatatgacagtggatagcaaaac 52837916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 4066432 - 4066380
Alignment:
Q  241 ttttcaagataaagtttctactaatggatttcttaaccattgtccttaagaca 293  Q
    ||||||||||| | |||||  ||||||||||||||| || |||||||||||||    
T  4066432 ttttcaagatataatttcttataatggatttcttaaacaatgtccttaagaca 4066380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 27923980 - 27923944
Alignment:
Q  272 cttaaccattgtccttaagacactgattagcaaaact 308  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  27923980 cttaaccattgtccttaggacactgattagctaaact 27923944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 37645395 - 37645330
Alignment:
Q  212 tattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaacca 279  Q
    |||||||||||||||| |||||  |||||||||||||| ||  ||| || ||||||||| ||||||||    
T  37645395 tattgctaagacaaaactaaac--ttgtattttcaagacaatatttatattaatggattccttaacca 37645330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 47519372 - 47519252
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaaga-caaaagtaaacact 236  Q
    |||| |||||| ||| ||||  ||||||||||||||  |||||| ||||| |||  |  |||||||||| ||| ||||| ||| | ||||| |||| |||    
T  47519372 aatgttaatgagtgttcttggggcattggttaaagtgttaaaattagtaagtttgcattaaaaagttgtgtaattattgataaaaacaaaattaaaaact 47519273  T
Q  237 tgtattttcaagataaagttt 257  Q
    | ||||||||||| |||||||    
T  47519272 tatattttcaagacaaagttt 47519252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 53650087 - 53650155
Alignment:
Q  212 tattgctaagacaaaagtaaaca-cttgtattttcaagataaagtttctactaatggatttcttaacca 279  Q
    ||||||||||||||||||||| |  || ||||||||| | ||| |||||||||||| ||| ||||||||    
T  53650087 tattgctaagacaaaagtaaaaattttatattttcaaaacaaaatttctactaatgaattccttaacca 53650155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 162 - 301
Target Start/End: Original strand, 3432610 - 3432749
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctac 261  Q
    |||||||||||||||||||||| ||| |||  | |||||| |  | ||| |||||||||||  ||||||||||||| ||||||||||||||||||||||     
T  3432610 attggttaaagtactaaaataaataagtttgcatcaaaaaatgatgtaattattgctaagaacaaagtaaacacttatattttcaagataaagtttctat 3432709  T
Q  262 taatggatttcttaaccattgtccttaagacactgattag 301  Q
    ||||||| |  |||||||||||||||||||||||| ||||    
T  3432710 taatggaatcattaaccattgtccttaagacactgcttag 3432749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 288
Target Start/End: Original strand, 42005345 - 42005473
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||||||||||||||| ||||||||| |||  | | |||| | || ||| ||||| ||||| ||||||||| | |||||||||||| ||||| |||||    
T  42005345 gcattggttaaagtactacaataagtaagtttgcatctaaaaatggtctaattattgttaagaaaaaagtaaagatttgtattttcaatataaaatttct 42005444  T
Q  260 actaatggatttcttaaccattgtcctta 288  Q
    | ||||||| | ||||||||||| |||||    
T  42005445 attaatggaatccttaaccattgccctta 42005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 54153866 - 54154010
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||||||||||||||||||||||||| |||  | | |||||| ||||||  |||| ||||| ||||||||| |||||||||| || || ||||||| |    
T  54153866 gcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtttaatcattgataagaaaaaagtaaagacttgtatttccatgacaaagttttt 54153965  T
Q  260 actaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    | ||||||| |  ||||||| || ||||| | ||||| |||||||    
T  54153966 attaatggaatctttaaccactgcccttagggcactggttagcaa 54154010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 304
Target Start/End: Complemental strand, 4195447 - 4195303
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagac-aaaagtaaacacttgtattttcaagataaagtttc 258  Q
    |||||||||||||||||||||||||||| |||  |  ||||| | || ||| | |||||||||  ||||||||| | |||||||| ||| | ||| || |    
T  4195447 gcattggttaaagtactaaaataagtaagtttgcataaaaaaatggtgtaatt-ttgctaagaagaaaagtaaagaattgtatttccaaaacaaaattac 4195349  T
Q  259 tactaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    || ||||||| | ||||||||||| ||||||| ||||| |||||||    
T  4195348 tattaatggaatccttaaccattgcccttaaggcactggttagcaa 4195303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 306
Target Start/End: Complemental strand, 32375338 - 32375191
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaag-taaacacttgtattttcaagataaagtttc 258  Q
    ||||| |||||||||||||||||||||| ||   |   |||||| || ||| ||||||||||| ||||  |||| ||||| |||||||||| ||| ||      
T  32375338 gcattagttaaagtactaaaataagtaagttagcattgaaaagtggtgtaattattgctaagaaaaaaaataaatacttgaattttcaagacaaaattct 32375239  T
Q  259 tactaatggatttcttaaccattgtccttaagacactgattagcaaaa 306  Q
    || ||||||| | ||||||||||| ||||| | ||||| |||||||||    
T  32375238 tattaatggaatccttaaccattgcccttagggcactggttagcaaaa 32375191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 304
Target Start/End: Complemental strand, 51313014 - 51312863
Alignment:
Q  153 ccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataa 252  Q
    ||||| |||||||||||| ||  |||||| ||||| |||  | |||||||| || | | |||| | ||||||||| ||||  ||| ||||||||||||||    
T  51313014 ccttgaagcattggttaatgtgttaaaattagtaagtttgcatcaaaaagtggtatgattattaccaagacaaaaataaaagcttatattttcaagataa 51312915  T
Q  253 agtttctactaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    | ||| || || |||||| |||||| |||| ||||| ||||||  |||||||    
T  51312914 aatttatattagtggattccttaactattgcccttaggacactagttagcaa 51312863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 304
Target Start/End: Complemental strand, 44765388 - 44765246
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctac 261  Q
    |||| |||||||| |||||||||||| |||  |   |||||| || ||| ||||||||||| | ||||||| |||||||||| ||| | |||||||| |     
T  44765388 attgattaaagtattaaaataagtaagtttgcattgaaaagtggtgtaattattgctaagaaataagtaaagacttgtatttccaaaacaaagtttccat 44765289  T
Q  262 taatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    || |||| | |||||||| || ||||| | ||||| |||||||    
T  44765288 tattggaatccttaaccactgcccttagggcactggttagcaa 44765246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 20137688 - 20137571
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    ||||||||| |||||||||||||||||||||  |||||||| | |  ||| |||||  |||||||||||||| | ||  |||| ||||| ||| ||||||    
T  20137688 cattggttagagtactaaaataagtaactttgcaacaaaaattgg--taattattgtcaagacaaaagtaaaaaatttcatttccaagacaaaatttcta 20137591  T
Q  261 ctaatggatttcttaaccatt 281  Q
    | |||||||| ||||| ||||    
T  20137590 c-aatggattccttaatcatt 20137571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 29398356 - 29398315
Alignment:
Q  178 aaataagtaactttaaaacaaaaagttgtttaactattgcta 219  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  29398356 aaataagtaactttacaacaaaaagttgtgtaactattgcta 29398315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 11529366 - 11529273
Alignment:
Q  219 aagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaactctaa 312  Q
    |||| ||||||||| ||||| || | ||||| |||  |||||||||||||||  ||||||||| | |||| | ||||| |||||| ||||||||    
T  11529366 aagataaaagtaaaaacttgcatctccaagacaaaacttctactaatggattctttaaccatttttcttagggcactgcttagcacaactctaa 11529273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 268
Target Start/End: Original strand, 47510743 - 47510851
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||| ||||||||||||||||||||| |||  | | |||| | || ||| ||||| ||||| ||||  ||| | |||||||| ||||| | |||||||    
T  47510743 gcattgattaaagtactaaaataagtaagtttgtatcgaaaaatggtgtaattattgttaagaaaaaaacaaagatttgtatttccaagacatagtttct 47510842  T
Q  260 actaatgga 268  Q
    | |||||||    
T  47510843 attaatgga 47510851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 304
Target Start/End: Complemental strand, 23070329 - 23070192
Alignment:
Q  167 ttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatg 266  Q
    |||||||| |||||||||||| |||  | | |||||| || |||  |||||||||| ||||||||| |||||||||| ||||| |||||||||| |||||    
T  23070329 ttaaagtattaaaataagtaaatttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaagacttgtatttccaagacaaagtttctattaatg 23070230  T
Q  267 gatttcttaaccattgtccttaagacactgattagcaa 304  Q
    || ||||||||||||||||||| | ||||| |||||||    
T  23070229 gaattcttaaccattgtccttagggcactggttagcaa 23070192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 45411263 - 45411343
Alignment:
Q  163 ttggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattt 243  Q
    |||||||||||||||||||||||||||||| ||||||||||| | ||| ||||| | ||| ||||||||| ||||| ||||    
T  45411263 ttggttaaagtactaaaataagtaactttataacaaaaagttatgtaattattgttgagataaaagtaaaaacttgcattt 45411343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 12139903 - 12139818
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaaga 249  Q
    ||||||||||||||||  |||||||||||||| ||| |||||||||| ||| ||||||| |||||||  |||| ||||||||||||||||    
T  12139903 gcattggttaaagtac--aaataagtaactttgaaataaaaagttgtgtaattattgctgagacaaa--taaaaacttgtattttcaaga 12139818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 307
Target Start/End: Original strand, 25240273 - 25240419
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    ||||| ||||||||| ||||||||||| |||  | | || ||| || |||  |||| ||||| |||| |||| | |||| ||| ||||| ||| ||||||    
T  25240273 cattgattaaagtacgaaaataagtaagtttgcatcgaacagtggtgtaatcattgataagaaaaaaataaagatttgtttttccaagacaaaatttcta 25240372  T
Q  261 ctaatggatttcttaaccattgtccttaagacactgattagcaaaac 307  Q
     |||| || ||||||||||||||||||| ||||||| ||||||||||    
T  25240373 ttaatagaattcttaaccattgtccttaggacactggttagcaaaac 25240419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 3338521 - 3338444
Alignment:
Q  212 tattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaa 289  Q
    ||||||||||||||||||||| | |||||||||||||| || |||| || ||||||| | ||||| ||||||||||||    
T  3338521 tattgctaagacaaaagtaaaaatttgtattttcaagacaatgtttttattaatggaatccttaatcattgtccttaa 3338444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 40024286 - 40024145
Alignment:
Q  169 aaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatgga 268  Q
    |||||||||| ||||||||||||  || |||||||||| ||| ||||||||| | ||||||||| ||||| |||| ||| | | | ||| ||||| || |    
T  40024286 aaagtactaacataagtaactttgcaataaaaagttgtgtaattattgctaaaataaaagtaaaaacttgcatttgcaaaacataatttatactattgca 40024187  T
Q  269 tttcttaaccattgtccttaagacactgattagcaaaactct 310  Q
    || ||||| |||||||||||   ||||  |||||||||||||    
T  40024186 ttccttaatcattgtccttagagcactagttagcaaaactct 40024145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 40019538 - 40019468
Alignment:
Q  212 tattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattg 282  Q
    ||||||||||| ||||||||| |||||||||| ||||| ||||||| || ||||||| | |||||||||||    
T  40019538 tattgctaagaaaaaagtaaagacttgtatttccaagacaaagtttttattaatggaatccttaaccattg 40019468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 31245346 - 31245263
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattt 243  Q
    ||||||||| |||||||||||||||||| |||  | | |||| | || ||| |||||||||||||||||| || ||||||||||    
T  31245346 gcattggttgaagtactaaaataagtaagtttgcatcgaaaaatggtgtaattattgctaagacaaaagtgaagacttgtattt 31245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 7833641 - 7833551
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataa 252  Q
    |||||||||||||||||||||| ||| |||  |  ||||| |  | ||| ||||||||||| ||||||||| |||||||||| ||||||||    
T  7833641 attggttaaagtactaaaataaataagtttgcataaaaaaatgatgtaattattgctaagaaaaaagtaaagacttgtatttccaagataa 7833551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 22680724 - 22680812
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaaga 249  Q
    |||||||||||||||| |||||||||| |||  | | |||||| || |||  |||||||||| |||| |||| |||| |||||||||||    
T  22680724 cattggttaaagtacttaaataagtaagtttgcatcgaaaagtggtgtaatgattgctaagaaaaaaataaagacttttattttcaaga 22680812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 31860399 - 31860303
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagttt 257  Q
    ||||||||||||||||||||| ||||| |||  | | |||| | || ||| ||||| |||||  |||||||| |||||||||| ||||| |||||||    
T  31860399 cattggttaaagtactaaaatgagtaagtttgcatcgaaaaatggtgtaattattgataagaagaaagtaaagacttgtatttccaagacaaagttt 31860303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 21946153 - 21946212
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaag 221  Q
    |||||||||| |||||||||||||||||||  || |||||||||| ||| |||| |||||    
T  21946153 attggttaaaatactaaaataagtaactttgcaataaaaagttgtgtaattattactaag 21946212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 23131557 - 23131444
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctac 261  Q
    |||||||||||||||||||||||||| |||  || |||||||||  ||| ||||||||| ||||||||||| | || ||||||||||| |||||||||||    
T  23131557 attggttaaagtactaaaataagtaattttgcaataaaaagttgcgtaattattgctaaaacaaaagtaaaaatttatattttcaagacaaagtttctac 23131458  T
Q  262 taatggatttctta 275  Q
    ||||||||| ||||    
T  23131457 taatggattcctta 23131444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 161 - 304
Target Start/End: Original strand, 29694302 - 29694445
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    ||||||||||||||||||||||||||| |||  |   ||||||  | ||| ||||| |||||||||| |||| |||||||||| ||||||||  ||||||    
T  29694302 cattggttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattattgttaagacaaaaataaaaacttgtatttccaagataatatttcta 29694401  T
Q  261 ctaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
     |||| || | ||||||||||||||||||||||||  |||||||    
T  29694402 ttaatagaatccttaaccattgtccttaagacactagttagcaa 29694445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 129 - 288
Target Start/End: Original strand, 2838965 - 2839123
Alignment:
Q  129 ttttagaataatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaag 228  Q
    |||||| | ||||||||||| || | ||| ||||||||||||  |  |||||| ||||| |||  | |||||||| || ||  |||||| || |||||||    
T  2838965 ttttaggagaatgctaatgagtgcctttggagcattggttaagttcttaaaattagtaagtttgcatcaaaaagtggtgtagttattgcaaa-acaaaag 2839063  T
Q  229 taaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtcctta 288  Q
    |||| | || ||||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  2839064 taaaaatttatattttcaagacaaagtttctactaatggattccttaaccaatgtcctta 2839123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 7592723 - 7592827
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    ||||| |||||||| |||||||||||| ||||||  |||||||  | ||| |||||||| ||||| |||||| ||||||||||| || | ||||| ||||    
T  7592723 cattgattaaagtattaaaataagtaagtttaaattaaaaagtgatgtaattattgctaggacaagagtaaaaacttgtatttttaaaacaaagtgtcta 7592822  T
Q  261 ctaat 265  Q
     ||||    
T  7592823 ttaat 7592827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 30699821 - 30699747
Alignment:
Q  248 gataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaactctaatttttatagt 322  Q
    |||||| | |||||| ||||||| |||||||| |||||||||||||||||| ||||| || ||| |||| |||||    
T  30699821 gataaaatctctacttatggattccttaaccactgtccttaagacactgatcagcaataccctacttttaatagt 30699747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 6454542 - 6454662
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||||||||| ||||||||||||||| |||  | |  |||||||| ||| ||||| ||||| ||| ||||| | |||| ||||| ||  | |||||||    
T  6454542 gcattggttaaaatactaaaataagtaagtttgcatc-gaaagttgtgtaattattgttaagaaaaaggtaaagatttgtgttttctag--agagtttct 6454638  T
Q  260 actaatggatttcttaaccattgt 283  Q
     |||||||| ||||||||||||||    
T  6454639 tctaatggaattcttaaccattgt 6454662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 31490408 - 31490476
Alignment:
Q  220 agacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtcctta 288  Q
    ||||||||||||| |||| |||||||||||| ||  ||||| ||||||||| ||||| |||||| ||||    
T  31490408 agacaaaagtaaaaacttatattttcaagatcaaaattctattaatggattccttaatcattgtactta 31490476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 27673797 - 27673689
Alignment:
Q  159 agcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttc 258  Q
    ||||||||||||| || |||||||||||| |||| | | || || || |||| ||||||||||  |||| |||| |||||||||| ||||| ||  ||||    
T  27673797 agcattggttaaattagtaaaataagtaagtttatatcgaagag-tggttaattattgctaagcaaaaaataaagacttgtatttccaagacaacatttc 27673699  T
Q  259 tactaatgga 268  Q
    || |||||||    
T  27673698 tagtaatgga 27673689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 34653403 - 34653276
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||| |||||||||||||||||||||| |||  |||||||||||| ||| |||||| |||||||||||||| |||||  ||||||||| | | |||||    
T  34653403 gcattgattaaagtactaaaataagtaacattactacaaaaagttgtgtaattattgc-aagacaaaagtaaaaacttgcgttttcaagacataatttct 34653305  T
Q  260 actaatggatttcttaaccattgtcctta 288  Q
    |||||| |||| ||||||||||| |||||    
T  34653304 actaatagattccttaaccattgccctta 34653276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 3423745 - 3423881
Alignment:
Q  165 ggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaa 264  Q
    ||||||||||||||||||||||| |||  ||| |||| |||| ||| |||||||||||||||| |||| ||||| ||||  || | | | ||||||||||    
T  3423745 ggttaaagtactaaaataagtaattttgtaactaaaacttgtgtaattattgctaagacaaaaataaaaacttgcatttctaaaacataatttctactaa 3423844  T
Q  265 tggatttcttaaccattgtccttaagacactgattag 301  Q
    || ||||||||||||||  ||||||| ||||||||||    
T  3423845 tgaatttcttaaccattacccttaaggcactgattag 3423881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 318
Target Start/End: Original strand, 24334458 - 24334600
Alignment:
Q  176 taaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttctta 275  Q
    ||||||||| || |||  || |||||||||| ||| |||| | |||| ||||||||| ||||||||||| || | ||| |||||||||||| ||| ||||    
T  24334458 taaaataagcaattttgcaataaaaagttgtgtaattattaccaagagaaaagtaaaaacttgtatttttaaaacaaaatttctactaatgaattcctta 24334557  T
Q  276 accattgtccttaagacactgattagcaaaactctaattttta 318  Q
    |||||| | |||| ||||||| |||||| ||| || |||||||    
T  24334558 accattattcttaggacactggttagcataacccttattttta 24334600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 13636215 - 13636326
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacactt 237  Q
    |||| |||||| |||||||  | ||||| |||||||| ||||||||||||||||  ||||||||||||| ||  ||||| ||||||||||||||| || |    
T  13636215 aatgataatgagtgtcctttgaacattgattaaagtattaaaataagtaactttgtaacaaaaagttgtgtagttattgttaagacaaaagtaaaaacat 13636314  T
Q  238 gtattttcaaga 249  Q
    | |||| |||||    
T  13636315 gcatttccaaga 13636326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 13736628 - 13736739
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacactt 237  Q
    |||| |||||| |||||||  | ||||| |||||||| ||||||||||||||||  ||||||||||||| ||  ||||| ||||||||||||||| || |    
T  13736628 aatgataatgagtgtcctttgaacattgattaaagtattaaaataagtaactttgtaacaaaaagttgtgtagttattgttaagacaaaagtaaaaacat 13736727  T
Q  238 gtattttcaaga 249  Q
    | |||| |||||    
T  13736728 gcatttccaaga 13736739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 22488846 - 22488947
Alignment:
Q  208 taactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaac 307  Q
    ||||||||||||||| |||||| || |||||||||| ||| | |||||||||| ||||||| | ||||||||||  ||||| | ||||| ||||||| ||    
T  22488846 taactattgctaagaaaaaagtgaaaacttgtatttccaaaacaaagtttctattaatggaatccttaaccattacccttagggcactggttagcaagac 22488945  T
Q  308 tc 309  Q
    ||    
T  22488946 tc 22488947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 41168739 - 41168600
Alignment:
Q  166 gttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactatt-gctaagacaaaagtaaacacttgtattttcaagataaagtttctactaa 264  Q
    |||||||||||||||||||||| |||  |   ||||||  | ||| |||| ||||||||||||||||| |||||||||| ||||| || |||| || |||    
T  41168739 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattatttgctaagacaaaagtaaagacttgtatttccaagacaatgtttttattaa 41168640  T
Q  265 tggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    |||| | |||||||||| || |||  |||||| |||||||    
T  41168639 tggaatccttaaccattatctttagaacactggttagcaa 41168600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 41086932 - 41086814
Alignment:
Q  166 gttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaat 265  Q
    |||||||||| ||||||||||| |||  || |||| ||||| ||| |||| | |||| ||||||||| | |||||||| ||||| ||||||||||| |||    
T  41086932 gttaaagtaccaaaataagtaattttttaataaaatgttgtgtaattattaccaagataaaagtaaaaatttgtatttccaagacaaagtttctacaaat 41086833  T
Q  266 ggatttcttaaccattgtc 284  Q
     ||||  ||||||| ||||    
T  41086832 agattctttaaccaatgtc 41086814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 39753144 - 39753204
Alignment:
Q  212 tattgctaagacaaaagtaaacacttgtattttcaagataaagtttc--tactaatggatt 270  Q
    ||||||||||| ||||||||| |||| ||||||||||| ||||||||  ||||||||||||    
T  39753144 tattgctaagataaaagtaaaaacttatattttcaagaaaaagtttctttactaatggatt 39753204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 44167265 - 44167177
Alignment:
Q  177 aaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaat 265  Q
    ||||||||||| |||  | | ||||||||| |||  |||||||||| ||||||||| | |||||||| ||||| |||||||||| ||||    
T  44167265 aaaataagtaagtttgcatcgaaaagttgtgtaatcattgctaagaaaaaagtaaagatttgtatttccaagacaaagtttctattaat 44167177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 29374628 - 29374562
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaa 227  Q
    |||||||||||||| |||||||||||| |||| | | |||||| || ||| ||||||||||| ||||    
T  29374628 cattggttaaagtagtaaaataagtaaatttacatcgaaaagtggtgtaattattgctaagaaaaaa 29374562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 8488600 - 8488724
Alignment:
Q  128 attttagaataatgctaatgaatgtccttgtagcattggttaaagtactaaaat-aagtaactttaaaacaaaaagttgtttaactattgctaaga--ca 224  Q
    ||||||| | |||||||| || || |||||  |||||||||||||| ||||||| |||||| |||    |||||||| || ||| |||||||||||  ||    
T  8488600 attttaggaaaatgctaacgagtgcccttggggcattggttaaagttctaaaataaagtaagtttgcctcaaaaagtggtataattattgctaagagtca 8488699  T
Q  225 aaagtaaacacttgtattttcaaga 249  Q
    ||||| || |||||||||| |||||    
T  8488700 aaagtcaaaacttgtatttccaaga 8488724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 295
Target Start/End: Complemental strand, 26402124 - 26401989
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||||||| ||||||||||||||||| |||  || |||||||||| |||  |||| |||||||||||| ||  |||| |||| ||| | ||| |||||    
T  26402124 gcattggttagagtactaaaataagtaatttttcaataaaaagttgtgtaatcattgttaagacaaaagtgaaagcttgcatttccaatacaaaatttct 26402025  T
Q  260 actaatggatttcttaaccattgtccttaagacact 295  Q
    ||||||||||| |||||||||||| |||| ||||||    
T  26402024 actaatggattccttaaccattgttcttaggacact 26401989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 307
Target Start/End: Original strand, 42641111 - 42641258
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||||||||||||||||||||||||| |||  | | |||| | || |||  |||| ||||| ||||||||| |||||||||||||||| |||||||||    
T  42641111 gcattggttaaagtactaaaataagtaagtttgcatcgaaaaatggtgtaatcattgataagaaaaaagtaaagacttgtattttcaagacaaagtttct 42641210  T
Q  260 actaatggatttcttaaccattgtccttaagacactgattagcaaaac 307  Q
    | |||| || | |||||| |||||| ||  ||||||| ||||||||||    
T  42641211 attaatagaatccttaactattgtctttgtgacactggttagcaaaac 42641258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 10418601 - 10418709
Alignment:
Q  167 ttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatg 266  Q
    |||||||| |||||||||||||||| ||| |||| ||||| ||| ||||| ||| |||||| |||| ||||||||||| |||| ||||||| |||||||     
T  10418601 ttaaagtattaaaataagtaactttgaaataaaatgttgtgtaattattgttaaaacaaaaataaaaacttgtattttgaagacaaagtttatactaata 10418700  T
Q  267 gatttctta 275  Q
    |||||||||    
T  10418701 gatttctta 10418709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 7612053 - 7611938
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||| ||||||||| |||||   || ||||| |||||||| ||||||||| |||||||||||   || ||||||||||||||||||||||    
T  7612053 cattggttaaagtattaaaataagcaacttcgcaataaaaaattgtttaattattgctaaaacaaaagtaaatttttttattttcaagataaagtttcta 7611954  T
Q  261 ctaatggatttcttaa 276  Q
     ||||| ||| |||||    
T  7611953 ttaatgaattccttaa 7611938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 12487222 - 12487099
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgcta-agacaaaagtaaacacttgtattttcaagataaagtttc 258  Q
    ||||||||||||||| ||||| ||||||||||| ||| || |||||| ||| |||| |   ||||||||||||| | |||||||||||||| ||| ||||    
T  12487222 gcattggttaaagtattaaaacaagtaactttacaacgaagagttgtgtaattattacccgagacaaaagtaaaaatttgtattttcaagacaaaatttc 12487123  T
Q  259 tactaatggatttcttaaccattg 282  Q
    ||||||| |||| |||||||||||    
T  12487122 tactaatagattccttaaccattg 12487099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 30252068 - 30251942
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctac 261  Q
    |||||||||||||||||||||| ||  |||  | | |||||| || ||| ||||||||||| ||||||||| |||||||||| ||||| ||| ||||||     
T  30252068 attggttaaagtactaaaataaatatatttgtatcgaaaagtggtgtaattattgctaagaaaaaagtaaagacttgtatttccaagacaaaatttctat 30251969  T
Q  262 taatggatttcttaaccattgtcctta 288  Q
    ||||||| | ||||||||||| |||||    
T  30251968 taatggaatccttaaccattgccctta 30251942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 288
Target Start/End: Original strand, 33085251 - 33085401
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacactt 237  Q
    ||||||||||| |||||||  | |||||||||||||  |||||| || || |||  |   |||||| || ||  ||||||||||||||||||||| | ||    
T  33085251 aatgctaatgagtgtccttagaacattggttaaagtgttaaaattagcaagtttgcatacaaaagtggtgtagttattgctaagacaaaagtaaaaattt 33085350  T
Q  238 gtattttcaagataaagtttctactaatggatttcttaaccattgtcctta 288  Q
     ||||||||||| |||||||||||||||||||| |||||||| || |||||    
T  33085351 atattttcaagacaaagtttctactaatggattccttaaccaatgccctta 33085401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 160 - 304
Target Start/End: Complemental strand, 1638093 - 1637949
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    |||||| |||||| |||||||||| ||| |||  | ||||||||||| ||| ||||||||||| ||||||||| | |||||||| ||||| ||| ||| |    
T  1638093 gcattgattaaagaactaaaataaataagtttgcatcaaaaagttgtgtaattattgctaagaaaaaagtaaaaatttgtatttccaagacaaaatttat 1637994  T
Q  260 actaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    | |||| || |  |||||||||| |||||||| |||| |||||||    
T  1637993 attaatagaatcattaaccattgcccttaagatactggttagcaa 1637949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 304
Target Start/End: Original strand, 7736298 - 7736441
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||||| |||||||||| |||  |   |||||| |  |||  |||||||||| |||| |||| |||||||||||||||||||||||||||    
T  7736298 cattggttaaagtacttaaataagtaagtttccattgaaaagtggcgtaatgattgctaagaaaaaattaaagacttgtattttcaagataaagtttcta 7736397  T
Q  261 ctaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
     ||||||  |  |||||||||| ||||| | ||||| |||||||    
T  7736398 ttaatgggatctttaaccattgcccttagggcactggttagcaa 7736441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 35626636 - 35626737
Alignment:
Q  212 tattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaactcta 311  Q
    ||||| ||||||||||||||| |||| ||||||||| | ||| |||||| ||||||||| ||||||||||||||||| | ||||  ||||||| || |||    
T  35626636 tattggtaagacaaaagtaaaaacttatattttcaaaacaaaatttctattaatggattccttaaccattgtccttagggcactagttagcaagacccta 35626735  T
Q  312 at 313  Q
    ||    
T  35626736 at 35626737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 304
Target Start/End: Complemental strand, 14157109 - 14156967
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctac 261  Q
    ||||||||||||  |||||||||||| |||  | ||| ||||  | ||| ||||| ||||||||||||||| | |||||||| ||||||||| ||||||     
T  14157109 attggttaaagttgtaaaataagtaagtttgcatcaataagtgatgtaattattgataagacaaaagtaaaaatttgtatttacaagataaaatttctat 14157010  T
Q  262 taatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    ||| |||||  |||| || |||| ||| ||||||  |||||||    
T  14157009 taaaggattcattaatcaatgtctttaggacacttgttagcaa 14156967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 8716476 - 8716395
Alignment:
Q  129 ttttagaataatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaa 210  Q
    |||||| | |||||||||||||||  ||| | ||||||||||||| ||||||||| ||||| || || ||||||||||||||    
T  8716476 ttttaggagaatgctaatgaatgttattggaacattggttaaagttctaaaataaataactgtataataaaaagttgtttaa 8716395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 25731214 - 25731281
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaa 227  Q
    |||||||||||||||||||||||||||| |||  |   ||||||||| ||| ||||||||||| ||||    
T  25731214 gcattggttaaagtactaaaataagtaagtttgcatagaaaagttgtgtaattattgctaagaaaaaa 25731281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 20078390 - 20078356
Alignment:
Q  153 ccttgtagcattggttaaagtactaaaataagtaa 187  Q
    ||||| |||||||||||||||||||||||||||||    
T  20078390 ccttggagcattggttaaagtactaaaataagtaa 20078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 34023363 - 34023285
Alignment:
Q  153 ccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaa 231  Q
    ||||| |||| |||||||||| ||||||||| ||| |||  |  ||||||| || ||| ||||||||||||||||||||    
T  34023363 ccttggagcaatggttaaagttctaaaataattaagtttgtattaaaaagtggtataattattgctaagacaaaagtaa 34023285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 261
Target Start/End: Original strand, 35980692 - 35980792
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtatttt--caagataaagtttct 259  Q
    |||||||||||||  ||||||| ||| |||  || ||||| |||| ||| |||||  |||||||||||||| | |||||||||  |||||||||||||||    
T  35980692 attggttaaagtatcaaaataaataattttgcaataaaaa-ttgtgtaattattgtcaagacaaaagtaaaaatttgtattttttcaagataaagtttct 35980790  T
Q  260 ac 261  Q
    ||    
T  35980791 ac 35980792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 279
Target Start/End: Original strand, 40132379 - 40132496
Alignment:
Q  162 attggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctac 261  Q
    |||| |||||||| ||||||| |||| |||| | |||||| | || || ||||  |||||  ||||||||| | |||||||||||| ||||| ||| ||     
T  40132379 attgattaaagtattaaaatatgtaaatttacatcaaaaaatggtctacctataactaaggtaaaagtaaaaatttgtattttcaaaataaaatttttat 40132478  T
Q  262 taatggatttcttaacca 279  Q
     ||| |||||||||||||    
T  40132479 caatagatttcttaacca 40132496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 8772517 - 8772420
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagttt 257  Q
    |||||||||||||||||||||||||||| |||  | | |||||| || ||| |||||| |||||||||||||| |||||||||||||||| |||||||    
T  8772517 gcattggttaaagtactaaaataagtaaatttgcatcgaaaagtggtgtaattattgccaagacaaaagtaaagacttgtattttcaagacaaagttt 8772420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 322
Target Start/End: Original strand, 9552818 - 9552958
Alignment:
Q  182 aagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatttcttaaccatt 281  Q
    ||||||||||| ||||||||| ||| ||| ||||| ||||||||||||||| ||||| |||| ||| || || ||| || |||| ||||  |||| ||||    
T  9552818 aagtaactttacaacaaaaaggtgtgtaattattgataagacaaaagtaaatacttgcatttccaaaatgaaatttttattaatagattctttaatcatt 9552917  T
Q  282 gtccttaagacactgattagcaaaactctaatttttatagt 322  Q
    | ||||||||||||| ||||||||||  ||||||| |||||    
T  9552918 gcccttaagacactggttagcaaaaccttaattttaatagt 9552958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 288
Target Start/End: Complemental strand, 2193392 - 2193257
Alignment:
Q  153 ccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataa 252  Q
    |||||| ||||||||||||||| |||||||||||| |||| | | |||||| || |||  |||| ||||| ||||||||| | || ||||||||||||||    
T  2193392 ccttgtggcattggttaaagtattaaaataagtaaatttacatcgaaaagtggtgtaatcattgataagaaaaaagtaaagatttatattttcaagataa 2193293  T
Q  253 agtttctactaatggatttcttaaccattgtcctta 288  Q
    |||||||| |||| || | |||||| ||||| ||||    
T  2193292 agtttctattaatagaatccttaactattgttctta 2193257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 46536647 - 46536776
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    ||||| |||||||| |||||||||||| |||  || | |||||||| ||  ||||| ||||||||||||||| |||||||||||||| ||| | ||| ||    
T  46536647 cattgattaaagtattaaaataagtaattttgcaatacaaagttgtgtagttattgataagacaaaagtaaaaacttgtattttcaaaatagaatttgta 46536746  T
Q  261 ctaatggatttcttaaccattgtccttaag 290  Q
    || ||| |||| ||||| ||||||||||||    
T  46536747 ctgatgaattttttaacaattgtccttaag 46536776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 160 - 304
Target Start/End: Original strand, 12188631 - 12188775
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    ||||||| |||||||||||||||||||| |||  |   |||| | || ||| ||||||||||| ||||||||| | |||||||| ||||| |||||||||    
T  12188631 gcattggataaagtactaaaataagtaattttgtattgaaaaatggtgtaattattgctaagaaaaaagtaaaaatttgtatttccaagacaaagtttct 12188730  T
Q  260 actaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
    | ||||||| | |||||| ||||  |||| | |||| ||||||||    
T  12188731 attaatggaatccttaacgattgctcttagggcactaattagcaa 12188775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 304
Target Start/End: Complemental strand, 26701644 - 26701501
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||||| |||||||||| |||  | | ||||||  | |||  |||| ||||| ||||||||| | |||||||||||||| ||||||||||    
T  26701644 cattggttaaagtacttaaataagtaagtttgcatcgaaaagtgatgtaatgattgataagaaaaaagtaaagatttgtattttcaagagaaagtttcta 26701545  T
Q  261 ctaatg-gatttcttaaccattgtccttaagacactgattagcaa 304  Q
     ||||| ||||| |||||||||| ||||| |||| || |||||||    
T  26701544 ttaatgagattt-ttaaccattgcccttaggacaatggttagcaa 26701501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 30264187 - 30264064
Alignment:
Q  166 gttaaagtactaaaataagtaactttaaaacaaaaagttgtttaacta-----ttgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||| || ||||||||||||||||| |||||||| |||| ||| ||     ||| ||||||||||||||| ||||  |||||||| | ||| ||||||    
T  30264187 gttaaattattaaaataagtaactttacaacaaaaaattgtgtaattaaattattgataagacaaaagtaaaaacttacattttcaaaacaaaatttcta 30264088  T
Q  261 ctaatggatttcttaaccattgtc 284  Q
    |||||  |||||||||||||||||    
T  30264087 ctaataaatttcttaaccattgtc 30264064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 304
Target Start/End: Original strand, 44603626 - 44603769
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    ||||| |||||||||| |||||||||| |||    |||||||| || |||  |||||||||| |||| |||| | ||||| |||||||| ||||||| ||    
T  44603626 cattgattaaagtacttaaataagtaagtttgcctcaaaaagtggtgtaatgattgctaagaaaaaaataaagatttgtactttcaagacaaagtttata 44603725  T
Q  261 ctaatggatttcttaaccattgtccttaagacactgattagcaa 304  Q
     ||||||  | ||||||||||| ||||| | ||||| |||||||    
T  44603726 ttaatgggatccttaaccattgcccttagggcactggttagcaa 44603769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 7330518 - 7330636
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacactt 237  Q
    |||| |||||| |||||||| | |||||||||||||||||||||||||||   |  |   ||||||  |  || ||||||||||| ||||| ||| ||||    
T  7330518 aatgttaatgagtgtccttgaaacattggttaaagtactaaaataagtaagcatgcattgaaaagtgatgcaattattgctaagaaaaaagcaaatactt 7330617  T
Q  238 gtattttcaagataaagtt 256  Q
    |||||||||||||||||||    
T  7330618 gtattttcaagataaagtt 7330636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 283
Target Start/End: Original strand, 29020085 - 29020207
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttcta 260  Q
    |||||||||||||| |||||||||||| |||| || |||||||||| ||| |||||||||    |  ||||| | ||||||||  |||| ||| ||||||    
T  29020085 cattggttaaagtattaaaataagtaattttacaataaaaagttgtgtaattattgctaaagtgatggtaaaaatttgtatttctaagacaaaatttcta 29020184  T
Q  261 ctaatggatttcttaaccattgt 283  Q
    |||||| ||| ||||| ||||||    
T  29020185 ctaatgaattccttaatcattgt 29020207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 17969410 - 17969342
Alignment:
Q  138 aatgctaatgaatgtccttgtagcattggttaaagtactaaaataagtaactttaaaacaaaaagttgt 206  Q
    ||||||||||| |||| |||   ||||||||||||||||||||||||||| |||  |||||||||||||    
T  17969410 aatgctaatgagtgtcgttgggacattggttaaagtactaaaataagtaattttgcaacaaaaagttgt 17969342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 30350733 - 30350846
Alignment:
Q  171 agtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaagataaagtttctactaatggatt 270  Q
    |||||||||||||||||||||  || ||| | |||| |||  |||||||||| ||||| |||  |||| |||| ||||| | | || |||||||| ||||    
T  30350733 agtactaaaataagtaactttgcaataaacaattgtgtaatcattgctaagataaaagcaaaagcttgcatttccaagacataattcctactaatagatt 30350832  T
Q  271 tcttaaccattgtc 284  Q
     |||||||||||||    
T  30350833 ccttaaccattgtc 30350846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 21824306 - 21824234
Alignment:
Q  234 acttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaa 306  Q
    |||||||||||||||| ||||||||| ||  | |||||||||| || |||||||| || ||| ||||||||||    
T  21824306 acttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagacttattagcaaaa 21824234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 42724007 - 42724065
Alignment:
Q  237 tgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacact 295  Q
    |||||||  |||| |||||||||| ||||||| | ||||||||||| ||||||||||||    
T  42724007 tgtatttcaaagacaaagtttctattaatggaatccttaaccattgcccttaagacact 42724065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 19703887 - 19703787
Alignment:
Q  161 cattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgct-aagacaaaagtaaacacttgtattttcaagataaagtttct 259  Q
    ||||||||||||||||||||||| |||  ||  | |||||| | || ||||||||||| || ||||||||||| |  ||||||| ||||| ||| |||||    
T  19703887 cattggttaaagtactaaaataaataagcttgtatcaaaaaatggtgtaactattgctaaaaacaaaagtaaaaatatgtatttacaagacaaattttct 19703788  T
Q  260 a 260  Q
    |    
T  19703787 a 19703787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 49731196 - 49731133
Alignment:
Q  243 ttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaac 307  Q
    ||||||| |||  |||||||  |||||| ||||||||||||||||||| |||| |||||||||||    
T  49731196 ttcaagacaaaacttctacttttggattccttaaccattgtccttaag-cacttattagcaaaac 49731133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 246630 - 246541
Alignment:
Q  160 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtttaactattgctaagacaaaagtaaacacttgtattttcaaga 249  Q
    ||||| |||||||||||||||||||||| |||  | | |||||| || ||| ||||||| ||| ||||||||| ||||||||||||||||    
T  246630 gcattagttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaattattgctcagaaaaaagtaaaaacttgtattttcaaga 246541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 3615 - 3687
Alignment:
Q  234 acttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaa 306  Q
    |||||||||||||||| ||||||||| ||  | |||||||||| || |||||||| || ||| ||||||||||    
T  3615 acttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagacttattagcaaaa 3687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 8504 - 8576
Alignment:
Q  234 acttgtattttcaagataaagtttctactaatggatttcttaaccattgtccttaagacactgattagcaaaa 306  Q
    |||||||||||||||| ||||||||| ||  | |||||||||| || |||||||| || ||| ||||||||||    
T  8504 acttgtattttcaagacaaagtttcttcttgtagatttcttaaacaatgtccttaggagacttattagcaaaa 8576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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