View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_low_14 (Length: 392)
Name: NF5654_low_14
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 3181322 - 3180950
Alignment:
| Q |
1 |
ccttctttaggagtatctaaagcgggtaaatgcttcaatattctcatggaagggttccaaagaagggctagattaggattgattgcgaaacaaattatac |
100 |
Q |
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| T |
3181322 |
ccttctttaggagtatctaaagcgggtaattgcttcaatattctcatggaagggttccaaagaagagctagattaggattgattgcgaaacaaattatac |
3181223 |
T |
|
| Q |
101 |
cgtcgcaagaagcaacgaggcgatcgtaatagttacgattaatgggagaatactggtattcggtggcattatcggtgaaaattgagttgaaattgggcga |
200 |
Q |
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| T |
3181222 |
cgtcgcaagaagcaacgaggcgatcgtaatagttacgattaatgggagaatactggtattcggtggcattatcggtgaaaattgagttgaaattgggaga |
3181123 |
T |
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| Q |
201 |
gtggagtgggtaagagattactgtgaannnnnnngaggggatgcatgtggttgttatgaggtggtggcgattggttgattcgtgaaggtgttttttggcg |
300 |
Q |
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| T |
3181122 |
gtggagtgggtaagagattactgtgaatttttttgaggggatgcatgtggttgttatgaggtggtggcgattggttgattcgtgaaggtgttttttggcg |
3181023 |
T |
|
| Q |
301 |
aatttgggatcggttgagattagagaattccatgaatggcatacacagcggaatcgtaggacgcatttgacgg |
373 |
Q |
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| T |
3181022 |
aatttgggatcggttgagattagagaattccatgaattgcatacacagcggaatcgtaggacgcatttgacgg |
3180950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 1421898 - 1421948
Alignment:
| Q |
282 |
gtgaaggtgttttttggcgaatttgggatcggttgagattagagaattcca |
332 |
Q |
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| T |
1421898 |
gtgaaggtgttttttggcgaatttgggatcatttgagattagaaaattcca |
1421948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 23896613 - 23896722
Alignment:
| Q |
16 |
tctaaagcgggtaaatgcttcaatattctcatggaagggttccaaagaagggctagattaggattgattgcgaaacaaattataccgtcgcaagaagcaa |
115 |
Q |
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||||||| |||||| | ||| ||| |||| ||||||||||||||| || ||| |||| || || ||||| |||||||| | ||||||||||||||||| |
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| T |
23896613 |
tctaaagtgggtaatttctttaattttctaatggaagggttccaagtaacggcaagatgagtatcaattgcaaaacaaatgagaccgtcgcaagaagcaa |
23896712 |
T |
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| Q |
116 |
cgaggcgatc |
125 |
Q |
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||| ||||| |
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| T |
23896713 |
tgagtcgatc |
23896722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 24234112 - 24234201
Alignment:
| Q |
282 |
gtgaaggtgttttttggcgaatttgggatcggttgagattagagaattccatgaatggcatacacagcggaatcgtaggacgcatttgac |
371 |
Q |
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||||||||||||||||| |||||| ||||| | ||||| || ||||||||||| | || |||||||||||| |||||| | ||||||| |
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| T |
24234112 |
gtgaaggtgttttttggtgaatttaggatcattagagataagcgaattccatgacttacagacacagcggaattgtaggaggaatttgac |
24234201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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