View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_low_15 (Length: 364)
Name: NF5654_low_15
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 55988996 - 55989177
Alignment:
| Q |
1 |
tcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55988996 |
tcgaccagtggtgaattcttgtgacgtattttattatgcttggaagcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatc |
55989095 |
T |
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| Q |
101 |
atattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtatctgttcaactttaaca |
182 |
Q |
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| T |
55989096 |
atattaatggcctcagcagatatagcaatgtcaggttgcaccttcttcagaacttggtagatgtatctgttcaactttaaca |
55989177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 55324984 - 55325158
Alignment:
| Q |
1 |
tcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatc |
100 |
Q |
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| T |
55324984 |
tcgaccagtggtgaattcttgtgacgtattttgttatgcttcga---agctttctgagcaagcttc-aacatcatgtctgttaagatagtgttcatca-- |
55325077 |
T |
|
| Q |
101 |
atattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtatctgttcaactttaaca |
182 |
Q |
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| T |
55325078 |
at-tccacagccccggcagatatagcaatgtcagggtgaaccttcttcagaacttcgtagatgaatttgttcaactttaaca |
55325158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 55972744 - 55972918
Alignment:
| Q |
1 |
tcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagcagctttctgagcaagcttcaaaaatcatgtctgttaagatagtgttcatcatc |
100 |
Q |
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| T |
55972744 |
tcgaccagtggtgaattcttgtgacgtattttgttatgcttggaagc---tttctgagcaagcttcaaca-tcatgtctgttataagagtgttcatcat- |
55972838 |
T |
|
| Q |
101 |
atattaatggcctcagcagatatagcaatgtcagggtgcaccttcttcagaacttggtagatgtatctgttcaactttaaca |
182 |
Q |
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|| | ||| ||| |||| |||||||||||||| || |||||||| ||||||| |||||||||| |||| |||||||||| |
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| T |
55972839 |
--atccagggcttcaccagagatagcaatgtcaggatgaaccttcttaagaacttagtagatgtatttgttaaactttaaca |
55972918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 275 - 357
Target Start/End: Original strand, 55989925 - 55990007
Alignment:
| Q |
275 |
aagcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaagggtgctagaataatct |
357 |
Q |
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| T |
55989925 |
aagcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaattatgcaagaagggcgctagaagaatct |
55990007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 55989215 - 55989274
Alignment:
| Q |
220 |
accggtcgtatcttcagttccattttgtgcgatgattatagggtatttatagattaagca |
279 |
Q |
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| T |
55989215 |
accggtcgtatcttcagttccattttgtgcgatgattatagggtatttatagattaagca |
55989274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 24269061 - 24269123
Alignment:
| Q |
281 |
cccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaaggg |
343 |
Q |
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| T |
24269061 |
cccaccaaaaatatgagaagaaagaacttgaagatccaaagtgaaacaattatgcaagaaggg |
24269123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 27909340 - 27909264
Alignment:
| Q |
281 |
cccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgcaagaagggtgctagaataatct |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||| ||||||| ||||| |
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| T |
27909340 |
cccaccaaaaatatgagaagaaagaacttgaagacacaaagtgatacatttatgcaagaagggcgctagaagaatct |
27909264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 3604516 - 3604565
Alignment:
| Q |
281 |
cccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaat |
330 |
Q |
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| T |
3604516 |
cccaccaaaaatatgagatgaaagaacttgaagacccaaagtgaaacaat |
3604565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 10876858 - 10876799
Alignment:
| Q |
276 |
agcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgc |
335 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||| |
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| T |
10876858 |
agcatcccaccaaaaatatgagaagaaagaacgtgaagatccaaagtgaaataattatgc |
10876799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 10881929 - 10881870
Alignment:
| Q |
276 |
agcaccccaccaaaaatatgagaagaaagaacttgaagacccaaagtgaaacaatcatgc |
335 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||| |
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| T |
10881929 |
agcatcccaccaaaaatatgagaagaaagaacgtgaagatccaaagtgaaataattatgc |
10881870 |
T |
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