View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_low_16 (Length: 341)
Name: NF5654_low_16
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 880814 - 880491
Alignment:
| Q |
16 |
aaaatgataataatcaaaacttatgtcttacaaaagcatttcgattttaaagcttttgtagttttacctccgttataatacattt--------aactat- |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
880814 |
aaaatgataataatcaaaacttaagtcttacaaaagcatttcgattttaaagcttttgtagttttacctccgttataatacatttcttacagtaactata |
880715 |
T |
|
| Q |
107 |
-gtttgaattataattttattttgtcaattacttcatatttacattttgtctattctatgtaacattgcataggttaagacagctaaatatgata-tttt |
204 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
880714 |
tgtttcaattataattttattttgtgaattacttcatatttacattttgtctatcttatgcaacattgcataggttaagacagctaaatatgataatttt |
880615 |
T |
|
| Q |
205 |
tatggaaaacaacaactatttattatatttattataaaatcatacacttaatataaaatacacaaattttaaaactatttttaactttttataatatgca |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880614 |
tattgaaaacaacaactatttattatatttattataaaatcatacacataatataaaatacacaaattttaaaactatttttaactttttataatatgca |
880515 |
T |
|
| Q |
305 |
agttttcagatgatataacaactca |
329 |
Q |
| |
|
|| ||||| |||||||||||||||| |
|
|
| T |
880514 |
ag-tttcaaatgatataacaactca |
880491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University