View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_low_19 (Length: 290)
Name: NF5654_low_19
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 4077940 - 4077678
Alignment:
| Q |
18 |
tttttgacaatgaatcttatccactctacaaagaacaacagtgcaagttcatgtctgatcaactggcttgtgagaagtttggaagggaggatcttagcta |
117 |
Q |
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| T |
4077940 |
tttttgacaatgaatcttatccactctacaaagaacaacagtgcaagttcatgtctgatcaactggcttgtgagaagtttggaagggaggatcttagcta |
4077841 |
T |
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| Q |
118 |
ccagaattggaggtggaagcctcatcaatgtggcctaccaaggtattataaactacatcaatgttgatgagataacactattttgaaacgtattataaag |
217 |
Q |
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| T |
4077840 |
ccagaattggaggtggaagcctcatcaatgtgacctaccaaggtattataaaccacatcaatgttgatgagataacactattttgaaatgtattataaag |
4077741 |
T |
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| Q |
218 |
ctcatttgtaatattaaaatacgagtcgtagtctagtcttcatccaattgtcgagttcctttg |
280 |
Q |
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| T |
4077740 |
ttcatttgtaatattaaaatacgagttgtagtctagtcttcatccaattgtcgagttcctttg |
4077678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 25821700 - 25821831
Alignment:
| Q |
18 |
tttttgacaatgaatcttatccactctacaaagaacaacagtgcaagttcatgtctgatcaactggcttgtgagaagtttggaagggaggatcttagcta |
117 |
Q |
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||||||| |||||| |||||||| | |||||||| | ||||||| ||| |||| ||||| ||||||||||||| | |||||| ||||| | || || |
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| T |
25821700 |
tttttgataatgaaacttatccattatacaaagagaatcagtgcagtttcttgtcagatcagttggcttgtgagaaatatggaagaaaggatttgagtta |
25821799 |
T |
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| Q |
118 |
ccagaattggaggtggaagcctcatcaatgtg |
149 |
Q |
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| T |
25821800 |
ccaaaattggaggtggaagcctcaccaatgtg |
25821831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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