View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_low_25 (Length: 254)

Name: NF5654_low_25
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_low_25
NF5654_low_25
[»] chr6 (5 HSPs)
chr6 (24-226)||(10522816-10523019)
chr6 (154-207)||(30600550-30600603)
chr6 (165-227)||(34057936-34057998)
chr6 (165-202)||(10335391-10335428)
chr6 (154-198)||(9024180-9024224)
[»] chr7 (8 HSPs)
chr7 (131-209)||(39582866-39582944)
chr7 (165-200)||(10893884-10893919)
chr7 (172-202)||(650526-650556)
chr7 (165-203)||(12843049-12843087)
chr7 (165-203)||(18750882-18750920)
chr7 (165-206)||(21238820-21238861)
chr7 (165-202)||(43160491-43160528)
chr7 (154-202)||(37775989-37776037)
[»] chr8 (8 HSPs)
chr8 (154-209)||(32691743-32691798)
chr8 (165-201)||(24758535-24758571)
chr8 (158-202)||(3112362-3112406)
chr8 (165-209)||(8917551-8917595)
chr8 (160-198)||(16230100-16230138)
chr8 (172-201)||(31681852-31681881)
chr8 (158-198)||(9936825-9936865)
chr8 (158-198)||(26096734-26096774)
[»] chr3 (6 HSPs)
chr3 (138-208)||(42607629-42607699)
chr3 (146-209)||(1502574-1502637)
chr3 (165-209)||(19323463-19323507)
chr3 (167-209)||(32166200-32166242)
chr3 (165-198)||(30367634-30367667)
chr3 (146-198)||(23271990-23272042)
[»] chr4 (11 HSPs)
chr4 (103-180)||(540776-540853)
chr4 (154-203)||(2976700-2976749)
chr4 (165-208)||(10164464-10164507)
chr4 (172-203)||(10518003-10518034)
chr4 (156-203)||(45615421-45615468)
chr4 (165-207)||(8457927-8457969)
chr4 (154-216)||(18513245-18513307)
chr4 (152-201)||(25400849-25400898)
chr4 (165-194)||(41578413-41578442)
chr4 (167-203)||(41989570-41989606)
chr4 (165-201)||(50216697-50216733)
[»] chr2 (4 HSPs)
chr2 (152-210)||(30289809-30289868)
chr2 (165-206)||(32843716-32843757)
chr2 (154-198)||(16630806-16630850)
chr2 (154-198)||(18570983-18571027)
[»] chr1 (7 HSPs)
chr1 (154-209)||(13709186-13709241)
chr1 (152-209)||(12611966-12612023)
chr1 (164-201)||(41500720-41500757)
chr1 (164-201)||(41510898-41510935)
chr1 (154-198)||(3921678-3921722)
chr1 (172-208)||(13709113-13709149)
chr1 (165-209)||(26462660-26462704)
[»] chr5 (3 HSPs)
chr5 (165-199)||(645342-645376)
chr5 (167-205)||(41755327-41755365)
chr5 (154-198)||(23287353-23287397)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 10522816 - 10523019
Alignment:
Q  24 cacagatacagatgcttgacgctggtaatagcttttaaaa-aatgacataatttgatgtaaatagctccatatggcatggacacttatgattgaaggtgt 122  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  10522816 cacagatacagatgcttgtcgctggtaataacttttaaaaaaatgacataatttgatgtaattacctccatatggcatggacacttatgattgaaggtgt 10522915  T
Q  123 gtccggtgtctgtcacgtgtccatgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtctttgtccgtgtct 222  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10522916 gtccggtgtctgtcacgtgtccatgtccaatacagacacacatgattatattcaattatgtcattttcttaaattactaccagtgtctttgtccgtgttt 10523015  T
Q  223 gtgt 226  Q
    ||||    
T  10523016 gtgt 10523019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 30600603 - 30600550
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtg 207  Q
    ||||||||| |||||||  ||| |||||||||||||||||||||||||| ||||    
T  30600603 actgacacatatgattacgttctattatgtcattttcttaaattactactagtg 30600550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 34057998 - 34057936
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagtgtctttgtccgtgtctgtgtc 227  Q
    |||||| | |||||||||||||||||||| |||||||  ||||| | ||||||||| ||||||    
T  34057998 tgattacagtcaattatgtcattttcttatattactattagtgtttgtgtccgtgtatgtgtc 34057936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 10335391 - 10335428
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactac 202  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  10335391 tgattacattcaattatgtcattttctcaaattactac 10335428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 9024180 - 9024224
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaatta 198  Q
    ||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  9024180 actgacacatatgattacattgaattatgtcattttctcaaatta 9024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 39582866 - 39582944
Alignment:
Q  131 tctgtcacgtgtccatgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    |||| ||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  39582866 tctgacacgtgtccatgtccaacaccgacacacatgactatattcaataatgtcattttcttaaatcactaccagtgtc 39582944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 10893884 - 10893919
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattact 200  Q
    |||||| |||||||||||||||||||||||||||||    
T  10893884 tgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Complemental strand, 650556 - 650526
Alignment:
Q  172 attcaattatgtcattttcttaaattactac 202  Q
    |||||||||||||||||||||||||||||||    
T  650556 attcaattatgtcattttcttaaattactac 650526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 12843049 - 12843087
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactacc 203  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  12843049 tgattatattcaattatgtcattttctcaaattaatacc 12843087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 18750920 - 18750882
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactacc 203  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  18750920 tgattacattcaattatgtcattttcttaaattattacc 18750882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 21238861 - 21238820
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagt 206  Q
    |||||| |||||||| || |||||||||||||||||||||||    
T  21238861 tgattacattcaattttgacattttcttaaattactaccagt 21238820  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 43160528 - 43160491
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactac 202  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  43160528 tgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 37776037 - 37775989
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaattactac 202  Q
    |||||||||  |||||| ||| |||||||||||||||| ||||||||||    
T  37776037 actgacacatgtgattacatttaattatgtcattttctcaaattactac 37775989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 32691798 - 32691743
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    |||||||||  |||||| |||||||||||||||||||||||||||||||| |||||    
T  32691798 actgacacatgtgattacattcaattatgtcattttcttaaattactaccggtgtc 32691743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 24758535 - 24758571
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattacta 201  Q
    |||||||||||||||||||||||||||||||||||||    
T  24758535 tgattatattcaattatgtcattttcttaaattacta 24758571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 3112362 - 3112406
Alignment:
Q  158 acacacatgattatattcaattatgtcattttcttaaattactac 202  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  3112362 acacacatgattaaattcaataatgtcattttctcaaattactac 3112406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 8917551 - 8917595
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    |||||| ||||||||||||||||||||||||| || |||||||||    
T  8917551 tgattacattcaattatgtcattttcttaaatcacaaccagtgtc 8917595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 16230100 - 16230138
Alignment:
Q  160 acacatgattatattcaattatgtcattttcttaaatta 198  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  16230100 acacatgattatattaaattatgtcattttctaaaatta 16230138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 31681852 - 31681881
Alignment:
Q  172 attcaattatgtcattttcttaaattacta 201  Q
    ||||||||||||||||||||||||||||||    
T  31681852 attcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 9936865 - 9936825
Alignment:
Q  158 acacacatgattatattcaattatgtcattttcttaaatta 198  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  9936865 acacatatgattatattgaattatatcattttcttaaatta 9936825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 26096734 - 26096774
Alignment:
Q  158 acacacatgattatattcaattatgtcattttcttaaatta 198  Q
    ||||||||||||| |||||||| | ||||||||||||||||    
T  26096734 acacacatgattacattcaattttctcattttcttaaatta 26096774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 42607699 - 42607629
Alignment:
Q  138 cgtgtccatgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgt 208  Q
    ||||||| |||||||||| ||||||  ||||||||||||||||||||| |||| || |||||||| |||||    
T  42607699 cgtgtccgtgtccaataccgacacatgtgattatattcaattatgtcagtttcatagattactacaagtgt 42607629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Complemental strand, 1502637 - 1502574
Alignment:
Q  146 tgtccaatactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    ||||||| || ||||||  |||||| |||||||||||||||||||||| |||| ||||||||||    
T  1502637 tgtccaacacagacacatgtgattacattcaattatgtcattttcttagattattaccagtgtc 1502574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 19323463 - 19323507
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||    
T  19323463 tgattaaattcaattatgtcattttctcaaattactatcagtgtc 19323507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 32166200 - 32166242
Alignment:
Q  167 attatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    |||| |||||||||||||||||||| |||||| ||||||||||    
T  32166200 attacattcaattatgtcattttctcaaattattaccagtgtc 32166242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 30367634 - 30367667
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaatta 198  Q
    |||||| |||||||||||||||||||||||||||    
T  30367634 tgattacattcaattatgtcattttcttaaatta 30367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 23271990 - 23272042
Alignment:
Q  146 tgtccaatactgacacacatgattatattcaattatgtcattttcttaaatta 198  Q
    ||||||| || |||||| ||||||| |||||||||||||| ||||| ||||||    
T  23271990 tgtccaacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 540776 - 540853
Alignment:
Q  103 acacttatgattgaaggtgtgtccggtgtctgtcacgtgtccatgtccaatactgacacacatgattatattcaatta 180  Q
    |||||| |||| |||||||||||||||||||| || |||||||||||| | |  ||||||  ||||||| ||||||||    
T  540776 acacttgtgatggaaggtgtgtccggtgtctgacatgtgtccatgtccgacatcgacacatgtgattatgttcaatta 540853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 2976749 - 2976700
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaattactacc 203  Q
    |||||||| |||||||| |||||||||||||||||||| |||||| ||||    
T  2976749 actgacacgcatgattacattcaattatgtcattttctcaaattattacc 2976700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 10164507 - 10164464
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagtgt 208  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  10164507 tgattacattcaattatgccattttcttaaattactaccggtgt 10164464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 203
Target Start/End: Original strand, 10518003 - 10518034
Alignment:
Q  172 attcaattatgtcattttcttaaattactacc 203  Q
    ||||||||||||||||||||||||||||||||    
T  10518003 attcaattatgtcattttcttaaattactacc 10518034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 45615421 - 45615468
Alignment:
Q  156 tgacacacatgattatattcaattatgtcattttcttaaattactacc 203  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||    
T  45615421 tgacacatgtgattacgttcaattatgtcattttcttaaattactacc 45615468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 8457969 - 8457927
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagtg 207  Q
    |||||| |||||||||||||||||||| |||||| ||||||||    
T  8457969 tgattacattcaattatgtcattttctcaaattattaccagtg 8457927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 18513245 - 18513307
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtctttgtcc 216  Q
    ||||||||| ||||||| ||| |||||||||||||||| |||||| || | |||||| |||||    
T  18513245 actgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgtcc 18513307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 25400898 - 25400849
Alignment:
Q  152 atactgacacacatgattatattcaattatgtcattttcttaaattacta 201  Q
    |||||||||||  |||| | ||| ||||||||||||||||||||||||||    
T  25400898 atactgacacatgtgataacatttaattatgtcattttcttaaattacta 25400849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 41578442 - 41578413
Alignment:
Q  165 tgattatattcaattatgtcattttcttaa 194  Q
    ||||||||||||||||||||||||||||||    
T  41578442 tgattatattcaattatgtcattttcttaa 41578413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 41989606 - 41989570
Alignment:
Q  167 attatattcaattatgtcattttcttaaattactacc 203  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  41989606 attacattcaattatgtcattttcttaaattattacc 41989570  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 50216697 - 50216733
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattacta 201  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  50216697 tgattacattcaattatgtcattttcttaaatcacta 50216733  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 30289868 - 30289809
Alignment:
Q  152 atactgacacacatgattatattcaatta-tgtcattttcttaaattactaccagtgtct 210  Q
    ||||||||||||||| ||| ||||||||| |  ||||||||||||||| |||||||||||    
T  30289868 atactgacacacatggttacattcaattactcacattttcttaaattattaccagtgtct 30289809  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 32843757 - 32843716
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagt 206  Q
    |||||| |||||||||||||||||||| | ||||||||||||    
T  32843757 tgattacattcaattatgtcattttctcatattactaccagt 32843716  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 16630850 - 16630806
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaatta 198  Q
    |||||||||  |||||| ||| |||||||||||||||||||||||    
T  16630850 actgacacatgtgattaaattgaattatgtcattttcttaaatta 16630806  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 18571027 - 18570983
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaatta 198  Q
    ||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  18571027 actgacacatatgattacattgaattatgtcattttctcaaatta 18570983  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 13709241 - 13709186
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    |||||||||  |||||| |||||||| |||||||||||||||| |||| |||||||    
T  13709241 actgacacatctgattacattcaattttgtcattttcttaaatcactatcagtgtc 13709186  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 12612023 - 12611966
Alignment:
Q  152 atactgacacacatgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    ||||||||||| ||||||| | |||||||||| ||||| | ||||||||| |||||||    
T  12612023 atactgacacatatgattacactcaattatgtgattttttcaaattactaacagtgtc 12611966  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 41500720 - 41500757
Alignment:
Q  164 atgattatattcaattatgtcattttcttaaattacta 201  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  41500720 atgattacattcaattatatcattttcttaaattacta 41500757  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 41510898 - 41510935
Alignment:
Q  164 atgattatattcaattatgtcattttcttaaattacta 201  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  41510898 atgattacattcaattatatcattttcttaaattacta 41510935  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 3921722 - 3921678
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaatta 198  Q
    |||||||| |||||||| ||| |||||||||||||||| ||||||    
T  3921722 actgacacgcatgattacattgaattatgtcattttctcaaatta 3921678  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 13709149 - 13709113
Alignment:
Q  172 attcaattatgtcattttcttaaattactaccagtgt 208  Q
    |||||||| | ||||||||||||||||||||||||||    
T  13709149 attcaattttatcattttcttaaattactaccagtgt 13709113  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 26462660 - 26462704
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattactaccagtgtc 209  Q
    |||||| |||||||||| |||||||||||||||| || |||||||    
T  26462660 tgattacattcaattatttcattttcttaaattattatcagtgtc 26462704  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 645376 - 645342
Alignment:
Q  165 tgattatattcaattatgtcattttcttaaattac 199  Q
    |||||| ||||||||||||||||||||||||||||    
T  645376 tgattacattcaattatgtcattttcttaaattac 645342  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 41755365 - 41755327
Alignment:
Q  167 attatattcaattatgtcattttcttaaattactaccag 205  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41755365 attacattcaattatgtcattttcttacattactaccag 41755327  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 23287353 - 23287397
Alignment:
Q  154 actgacacacatgattatattcaattatgtcattttcttaaatta 198  Q
    ||||||||| || |||||||| ||||||||||||||| |||||||    
T  23287353 actgacacatataattatattgaattatgtcattttcctaaatta 23287397  T

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