View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_low_28 (Length: 240)
Name: NF5654_low_28
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 33110889 - 33110687
Alignment:
| Q |
16 |
atgaaagagacatacattctctaaaagctgagatatcagcctctggtactccaccttccatcttgtttaattaattttgctaaaattgttgaagttggtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33110889 |
atgaaagagacatacattctctaaaagctgagatatcagcctctggtactccaccttccatcttgtttaattaattttgctaaaattgttgaagttggtg |
33110790 |
T |
|
| Q |
116 |
atttatgagagaatcagggaagcatagcaaagtgtgatgagagtggcgcaactagcaatcaatccaatcctatatataggctctttctcaattttctaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33110789 |
atttatgagagaatcagggaagcatagcaaagtgtgatgagagtggcgcaactagcaatcaatccaatcc----tataggctctttctcaattttctaat |
33110694 |
T |
|
| Q |
216 |
ggctata |
222 |
Q |
| |
|
|| |||| |
|
|
| T |
33110693 |
ggatata |
33110687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University