View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_low_6 (Length: 534)
Name: NF5654_low_6
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 23 - 527
Target Start/End: Original strand, 42025668 - 42026170
Alignment:
| Q |
23 |
aagaagaaatatgaaaaacatattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattctgagagtata |
122 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42025668 |
aagaagaaatatgaaaaacatattcaccctattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatacttttattctgagagtata |
42025767 |
T |
|
| Q |
123 |
gttccacatgagctaccaaataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgcta |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025768 |
gttccacatgagctaccaaataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgcta |
42025867 |
T |
|
| Q |
223 |
accaaataagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgtggt |
322 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42025868 |
accaaacaagtgacattcctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgtagt |
42025967 |
T |
|
| Q |
323 |
tggaaatgcacaagatctttatgtggcatctctagccaaagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaaatg |
422 |
Q |
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|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025968 |
tggaaatgcacaaggtctttatgtggca--tctagccagagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaaatg |
42026065 |
T |
|
| Q |
423 |
gaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaatgtttaggatggccacaggttc |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
42026066 |
gaagctcctttagtgttctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaaagtttaggatggccactggttt |
42026165 |
T |
|
| Q |
523 |
tgctc |
527 |
Q |
| |
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||||| |
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| T |
42026166 |
tgctc |
42026170 |
T |
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Back To:
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Target: chr3 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 1252870 - 1253045
Alignment:
| Q |
16 |
caaaaagaagaagaaatatgaaaaacatattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattctga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252870 |
caaaaagaagaagaaatatgaaaaacatattcaccccattttttatcctattcctctgcctaagtatcaacttgatccattgtgaatactttcattctga |
1252969 |
T |
|
| Q |
116 |
gagtatagttccacatgagctaccaaataaggtaactcaccttcatttctactactttgatattcacacaggcaat |
191 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252970 |
gaatatagttccacatgagctaccaaataagggaactcaccttcatttctactactttgatattcacacaggcaat |
1253045 |
T |
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