View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_low_7 (Length: 494)

Name: NF5654_low_7
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_low_7
NF5654_low_7
[»] chr3 (4 HSPs)
chr3 (42-478)||(38868667-38869104)
chr3 (196-356)||(30865211-30865374)
chr3 (254-376)||(39046707-39046829)
chr3 (80-152)||(39046578-39046650)
[»] chr6 (2 HSPs)
chr6 (80-379)||(33468632-33468932)
chr6 (181-397)||(3045579-3045795)
[»] chr5 (1 HSPs)
chr5 (181-293)||(1206412-1206524)


Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 42 - 478
Target Start/End: Complemental strand, 38869104 - 38868667
Alignment:
Q  42 tttaggatcggtttcttatcgttgtttactaagcagtttccatggcaaacgaacatggaatcacacttccagttctaaaatctggaattgggtttctcca 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38869104 tttaggatcggtttcttatcgttgtttactaagcagtttccatggcaaacgaacatggaatcgcacttccagttctaaaatctggaattgggtttctcca 38869005  T
Q  142 tgaagtaaaaggcgtgtttcacggcgcaaaagggaagaatatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38869004 tgaagtaaaaggcgtgtttcacggcgcaaaagggaagaatatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgag 38868905  T
Q  242 tcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38868904 tcagacttccagttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcg 38868805  T
Q  342 aatcagacttccaattccaatccatcatgatgaacaactaggtcataagactggtt-tggttagtagttttttatgattattgtacctcacatttgttga 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38868804 aatcagacttccaattccaatccatcatgatgaacaactaggtcataagactggttctggttagtagttttttatgattattgtacctcacatttgttga 38868705  T
Q  441 taattttactttgtattttttaaaggggtttggtaact 478  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38868704 taattttactttgtattttttaaaggggtttggtaact 38868667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 356
Target Start/End: Complemental strand, 30865374 - 30865211
Alignment:
Q  196 aaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcag---acttccagttcaagaattcaaacaaatggtgaatgaggtccttaaag 292  Q
    ||||||||||||||||||||||  ||||||||  || |||||| | |||    ||||||||||||||||||| |||||| ||||||||| || || ||||    
T  30865374 aaagacatagatgatttcaagacctgcatgaagaatgatcatcaaatcatcatacttccagttcaagaattctaacaaaaggtgaatgatgtactcaaag 30865275  T
Q  293 ggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaat 356  Q
    | || |   ||||||| ||||||||||||  |||||||| |||||||||||||||||| |||||    
T  30865274 gccagaaacatttaatcttgggattcaacacctacatgaagcattatcgaatcagactgccaat 30865211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 376
Target Start/End: Original strand, 39046707 - 39046829
Alignment:
Q  254 ttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttcc 353  Q
    ||||||||||||||||||   ||||| |||| |||  ||||||||   ||||||| || |||||||||| |||||||| |||| ||  ||||||||||||    
T  39046707 ttcaagaattcaaacaaagaatgaataaggtacttctagggcataatcatttaatattaggattcaactcctacatgaagcatcatgcaatcagacttcc 39046806  T
Q  354 aattccaatccatcatgatgaac 376  Q
    |||||||||| || |||||||||    
T  39046807 aattccaatcgatgatgatgaac 39046829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 39046578 - 39046650
Alignment:
Q  80 tccatggcaaacgaacatggaatcacacttccagttctaaaatctggaattgggtttctccatgaagtaaaag 152  Q
    ||||||||||| ||| ||| ||| ||| ||||||||  |||||||||||| ||||||||||||||||||||||    
T  39046578 tccatggcaaatgaaaatgaaataacatttccagttgcaaaatctggaatagggtttctccatgaagtaaaag 39046650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 80 - 379
Target Start/End: Complemental strand, 33468932 - 33468632
Alignment:
Q  80 tccatggcaaacgaacatggaatcacacttccagttctaaaatctggaattgggtttctccatgaagtaaaaggcgtgtttcacggcgcaaaagggaaga 179  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||   |||||||| ||   || || ||| |    
T  33468932 tccatggaaaacgaacatggaatcacacttccagttctaaaatctgaaatagggtttctccatgaagtaaaaactgtgtttcatggt--aagagagaaaa 33468835  T
Q  180 atatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtca---gacttccagttcaagaattcaaacaaatggtg 276  Q
     |||||  ||||| ||||||||||| ||| ||| ||||  || ||| || || |||||||| |||   ||||||||||| || |||||||| ||| | ||    
T  33468834 gtatgaagagtttataaaagacatacatgcttttaagacctggatggataataatcatcgaatcaccagacttccagttaaaaaattcaaagaaaggatg 33468735  T
Q  277 aatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattccaatccatcatgatgaac 376  Q
    ||| |||| |||||| ||||||   |||| ||||||||||||||| ||||||||| ||||||||| |||| |||| ||||||||||| || |||||||||    
T  33468734 aataaggtacttaaaaggcataatcatttgattttgggattcaacaactacatgaagcattatcgtatcacactttcaattccaatcaatgatgatgaac 33468635  T
Q  377 aac 379  Q
    |||    
T  33468634 aac 33468632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 181 - 397
Target Start/End: Original strand, 3045579 - 3045795
Alignment:
Q  181 tatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatg 280  Q
    |||||| ||||| |||||| |||||||||||||||||  |||||||| |||||||||| | ||  ||||||||||||||| |||||| ||| |||||| |    
T  3045579 tatgatgagtttataaaagccatagatgatttcaagacctgcatgaaggatcatcatccaatcgtacttccagttcaagagttcaaagaaagggtgaacg 3045678  T
Q  281 aggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattccaatccatcatgatgaacaact 380  Q
    |||| |||||||||||||  ||||||||||| ||||||||   |||||||| ||||| |||||||||||| ||||||||| || || || || ||||||     
T  3045679 aggtacttaaagggcataaatatttaattttaggattcaatgcctacatgaagcattgtcgaatcagactaccaattccagtcgatgataatcaacaacg 3045778  T
Q  381 aggtcataagactggtt 397  Q
    ||| ||  |||||||||    
T  3045779 aggccacgagactggtt 3045795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 1206524 - 1206412
Alignment:
Q  181 tatgataagtttgtaaaagacatagatgatttcaagagatgcatgaatgatcatcatcgagtcagacttccagttcaagaattcaaacaaatggtgaatg 280  Q
    |||||| | ||||| ||||||||| ||||||||||||  |||||||||||| ||||     ||| | ||| |||||||||||||||||||| || |||||    
T  1206524 tatgatgaatttgtgaaagacataaatgatttcaagacctgcatgaatgattatcaaatcatcatatttcaagttcaagaattcaaacaaagggcgaatg 1206425  T
Q  281 aggtccttaaagg 293  Q
    |||| ||||||||    
T  1206424 aggtacttaaagg 1206412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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