View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_low_9 (Length: 473)
Name: NF5654_low_9
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 880814 - 880358
Alignment:
| Q |
16 |
aaaatgataataatcaaaacttatgtcttacaaaagcatttcgattttaaagcttttgtagttttacctccgttataatacattt--------aactat- |
106 |
Q |
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| T |
880814 |
aaaatgataataatcaaaacttaagtcttacaaaagcatttcgattttaaagcttttgtagttttacctccgttataatacatttcttacagtaactata |
880715 |
T |
|
| Q |
107 |
-gtttgaattataattttattttgtcaattacttcatatttacattttgtctattctatgtaacattgcataggttaagacagctaaatatgata-tttt |
204 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
880714 |
tgtttcaattataattttattttgtgaattacttcatatttacattttgtctatcttatgcaacattgcataggttaagacagctaaatatgataatttt |
880615 |
T |
|
| Q |
205 |
tatggaaaacaacaactatttattatatttattataaaatcatacacttaatataaaatacacaaattttaaaactatttttaactttttataatatgca |
304 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
880614 |
tattgaaaacaacaactatttattatatttattataaaatcatacacataatataaaatacacaaattttaaaactatttttaactttttataatatgca |
880515 |
T |
|
| Q |
305 |
agttttcagatgatataacaactcaaatgaagagtaaatgtagatgagtgagtggataaatttaaggt-nnnnnnnnttgttcaataaaatttgtttatc |
403 |
Q |
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|| ||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
880514 |
ag-tttcaaatgatataacaactcaaatgaatagcaaatgtagatgagtgagtggataaatttaaggtaaaaaaaaattgttcaacaaaatttgtttatc |
880416 |
T |
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| Q |
404 |
catcaacattaccctgataaaaatcacataaatatagaaaaatgaagaatcacaggtt |
461 |
Q |
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| T |
880415 |
catcaacattaccctgacaaaaatcacataaatatagaaaaatgaagaatcacgggtt |
880358 |
T |
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