View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5655-Insertion-2 (Length: 651)
Name: NF5655-Insertion-2
Description: NF5655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5655-Insertion-2 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 8 - 651
Target Start/End: Complemental strand, 28884850 - 28884194
Alignment:
| Q |
8 |
actgaagcttcccaagtttgcataaaaaactggggtagatctttatcagacataactcacagacagtctcacgaggtttatgtgtaatcgagtgaagata |
107 |
Q |
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| T |
28884850 |
actgaagcttcccaaatttgcataaaaaactggggtagatctttatcagacataactcacag----tctcacgaggtttatgtgtaatcgagtgaagcta |
28884755 |
T |
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| Q |
108 |
ggttatgcggttaatttcggtccaagaaaaagctacaaaaagaatgcagaaacaagtnnnnnnngagagaaccatattatgaactatactaacttgcaca |
207 |
Q |
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| T |
28884754 |
ggttatgcggttaatttcgctccaagaaaaagctacaaaaagaatgcagaaacaagtaaaaaaagagagaaccatattatgaactatactaacctgcaca |
28884655 |
T |
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| Q |
208 |
gacaaaaatcagctaagatgaatatctaaacaatttctgagatgataaccattggcaaacataaactattccccaagacaaccaacaaatgcccacggac |
307 |
Q |
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| T |
28884654 |
gacaaaaatcagctaagatgaatatctaaacaatttctgagatgataaccattggcgaccataaactataccccaaggcaaccaacaaatgcccacggac |
28884555 |
T |
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| Q |
308 |
atatgttggacaccacatacgttcttcagtctgaagagtcggtgctacattaatttaccagtcc-----------------ctatgactaagctatgctg |
390 |
Q |
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| T |
28884554 |
atatgttggacaccacatacgttcttcagtatgaagagtcggtgctacattaatttaccagtccctatctactaaataaacctatgactaagctatgctg |
28884455 |
T |
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| Q |
391 |
ctaacttgggttccctagagattttcctagaaggaaaaggaacagtcttgaactcctgcaacaatgacttatgcaacaatctatcaactctggtaagtcc |
490 |
Q |
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| T |
28884454 |
ctaacttgggttccctagagattttcctagaaggaaaaggaacagtcttgaactcctgcaacaatgacttatgcaacaatctatcaactctggtaagtcc |
28884355 |
T |
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| Q |
491 |
tgtaagaccaacattatcagggtcttgtaaaataggattatgcaaaggattcaatgcttccaaattagacctcaacatcttatccttcttcaaaaaatca |
590 |
Q |
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| T |
28884354 |
tgtaagaccaacattatcagggtcttgtaaaataggattatgcaaaggattcaatgcttccaaattagacctcaacatcttatccttcttcaaaaaatca |
28884255 |
T |
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| Q |
591 |
ccttttttatcaaaccaatcaccccaaccttctctcaaaggcgataccttcttcccaattt |
651 |
Q |
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| T |
28884254 |
ccttttttatcaaaccaatcaccccaaccttctctcaaaggcgataccttcttcccaattt |
28884194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 28871489 - 28871397
Alignment:
| Q |
213 |
aaatcagctaagatgaatatctaaacaatttctgagatgataaccattggcaaacataaactattccccaagacaaccaacaaatgcccacgg |
305 |
Q |
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| T |
28871489 |
aaatctgctaagatgaatgtctggacaatttctgagataagaaccatcgacggccataaaccataccccaaggcaaccaacaaatgtccacgg |
28871397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 28873011 - 28872959
Alignment:
| Q |
14 |
gcttcccaagtttgcataaaaaactggggtagatctttatcagacataactca |
66 |
Q |
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| T |
28873011 |
gcttcccaggtttgcataaagaattggggtggatctttatcggacataactca |
28872959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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