View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5655-Insertion-3 (Length: 386)

Name: NF5655-Insertion-3
Description: NF5655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5655-Insertion-3
NF5655-Insertion-3
[»] chr5 (7 HSPs)
chr5 (13-386)||(34231503-34231876)
chr5 (51-293)||(42124625-42124867)
chr5 (115-374)||(34239357-34239616)
chr5 (70-181)||(41570765-41570876)
chr5 (123-214)||(41712443-41712533)
chr5 (111-163)||(42118326-42118378)
chr5 (109-179)||(42130042-42130112)
[»] chr6 (1 HSPs)
chr6 (51-265)||(25521758-25521972)
[»] chr2 (1 HSPs)
chr2 (115-308)||(12249584-12249777)
[»] chr4 (2 HSPs)
chr4 (111-337)||(11119151-11119377)
chr4 (49-149)||(11119555-11119655)
[»] chr3 (1 HSPs)
chr3 (51-173)||(8524203-8524325)
[»] chr1 (1 HSPs)
chr1 (70-117)||(15590744-15590791)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 34231503 - 34231876
Alignment:
Q  13 atgtactcaatggtcaaatcccggattcttttcatctgtcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231503 atgtactcaatggtcaaatcccggattcttttcatctgtcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatc 34231602  T
Q  113 actttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34231603 actttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcggtcaaattccagatgtatttggcgggatgaccaaactgcaagaa 34231702  T
Q  213 ctccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcagcttgttagattagattgttcatataataaattaagag 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  34231703 ctccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagttgactcaacttgttagattcgattgttcatataataaattaagag 34231802  T
Q  313 gtccattgccgaataaaattacaggttttcaacagctcgttcattttcgtttaaatgacaaccgtctaaacgga 386  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  34231803 gtccattgccaaataaaattacaggttttcaacagctagttcgttttcgtttaaatgacaaccgtctaaacgga 34231876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 293
Target Start/End: Complemental strand, 42124867 - 42124625
Alignment:
Q  51 tcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatcttt 150  Q
    |||||||||||||||  | |||||||||| |||||||| |||| |||||| || |||||||||||||||||||||||||| |||||| |||||||||||     
T  42124867 tcaaacaaatttcaagaattagatttgagaggtaacaaaattgaaggtgagctgccaacatcactttcaaaccttcgacaactcattcacttggatcttg 42124768  T
Q  151 catacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattcc 250  Q
      |  |||||||| ||  ||||||| |||||||| ||||| ||||||||||||||||||||||||  | ||  ||| |||||||||| ||||||||||||    
T  42124767 ggtggaattcatttagtggtcaaatcccagatgtgtttggtgggatgaccaaactgcaagaactcgatttaacttccaacaatttagaaggacaaattcc 42124668  T
Q  251 actttccttatttaagatgactcagcttgttagattagattgt 293  Q
    |  |||  |||||||  ||||||||||| | | ||||||||||    
T  42124667 atcttcactatttaacttgactcagcttttcacattagattgt 42124625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 115 - 374
Target Start/End: Original strand, 34239357 - 34239616
Alignment:
Q  115 tttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact 214  Q
    |||||||||||| | |||||||  ||||| ||||||||  ||||||| | ||| ||||||| ||||||||||||||  |||||||||||||||||| | |    
T  34239357 tttcaaaccttcaaaatctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaactgcaagtatt 34239456  T
Q  215 ccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcagcttgttagattagattgttcatataataaattaagaggt 314  Q
    |  ||||  ||| ||||| |||| |||||||||||||  ||| ||||||||  ||| ||| ||||||   ||||||||| | ||||||||||||   |||    
T  34239457 ctatctagcttctaacaaattagaaggacaaattccatcttcattatttaacttgaatcaacttgttgatttagattgtgcttataataaattagagggt 34239556  T
Q  315 ccattgccgaataaaattacaggttttcaacagctcgttcattttcgtttaaatgacaac 374  Q
    ||| | |  ||||||||| ||||||||||| ||||  || ||||  | ||||||||||||    
T  34239557 ccactacataataaaattgcaggttttcaaaagctaatttatttgaggttaaatgacaac 34239616  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 41570765 - 41570876
Alignment:
Q  70 tagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcag 169  Q
    |||||||||| |||||||| ||||||||||| || |||||||||||||||||||||| ||||||| |||| || || || |||| ||||||||| ||  |    
T  41570765 tagatttgagcggtaacaaaattggaggtgatcttccaacatcactttcaaaccttcaacatctcgttaatttagacctgtcatccaattcattcagtgg 41570864  T
Q  170 tcaaattccaga 181  Q
    ||||||||||||    
T  41570865 tcaaattccaga 41570876  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 41712443 - 41712533
Alignment:
Q  123 cttcgacatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact 214  Q
    ||||||| ||||| | ||||  ||||||||| ||||||||| ||| ||||||| |||||||| ||||| |||||||||||| ||||||||||    
T  41712443 cttcgacgtctcactcacttacatctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaact 41712533  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 42118378 - 42118326
Alignment:
Q  111 tcactttcaaaccttcgacatctcattaacttggatctttcatacaattcatt 163  Q
    |||||||||||||||| ||| |||||| ||||||||||||| | |||||||||    
T  42118378 tcactttcaaaccttcaacaactcattcacttggatctttcttccaattcatt 42118326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 42130112 - 42130042
Alignment:
Q  109 catcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcagtcaaattcca 179  Q
    |||||||| ||||||||| |||||||||| |||| ||||||||| | ||||  || ||| |||||||||||    
T  42130112 catcacttccaaaccttcaacatctcattcacttagatctttcaaaaaatttgtttagcggtcaaattcca 42130042  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 265
Target Start/End: Original strand, 25521758 - 25521972
Alignment:
Q  51 tcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatcttt 150  Q
    ||||||||||||||| || ||||||| |||  ||||||  ||| ||| ||| | |||||||||||||||||||||| ||||||||||  |||||||||||    
T  25521758 tcaaacaaatttcaagtattagattttagttataacaaatttgaaggagaattgccaacatcactttcaaaccttcaacatctcattcgcttggatcttt 25521857  T
Q  151 catacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaacaatttagtaggacaaattcc 250  Q
    ||||||||||||| ||  ||||||| ||||| || || || |||||||||||| |||||||||||  ||||||||  ||||| |||| |||||| |||||    
T  25521858 catacaattcatttagaggtcaaatcccagacgtgttcggtgggatgaccaaattgcaagaactcgatctatattttaacaaattagaaggacagattcc 25521957  T
Q  251 actttccttatttaa 265  Q
    |  ||| ||||||||    
T  25521958 atcttcgttatttaa 25521972  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 115 - 308
Target Start/End: Complemental strand, 12249777 - 12249584
Alignment:
Q  115 tttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact 214  Q
    |||||||||||| || ||||||| || |||||||||||| ||||||||| ||| ||||||| |||||||| ||| | | |||||||||||||||||||||    
T  12249777 tttcaaaccttcaacgtctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgcaagaact 12249678  T
Q  215 ccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcagcttgttagattagattgttcatataataaatta 308  Q
    |  ||||  ||||||||| |||  ||||||||||||  |||| ||||||||  ||||||| ||||||| ||||||||||||  |||| ||||||    
T  12249677 caatctagcttcaaacaaattacaaggacaaattccgttttcattatttaacttgactcaacttgttacattagattgttcgcataacaaatta 12249584  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 337
Target Start/End: Complemental strand, 11119377 - 11119151
Alignment:
Q  111 tcactttcaaaccttcgacatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaag 210  Q
    |||||||||||||||| ||| || ||| |||||||| |||| | |||| |||| ||| ||| ||| |||||||| ||||| |||||||| ||||||||||    
T  11119377 tcactttcaaaccttcaacaacttattcacttggatatttcttccaatgcatttagcggtccaataccagatgtgtttggtgggatgacaaaactgcaag 11119278  T
Q  211 aactccgtctatattcaaacaatttagtaggacaaattccactttccttatttaagatgactcagcttgttagattagattgttcatataataaattaag 310  Q
    |||||    || |||  ||||| |||| |||||||||||||   || ||||||||  ||||||| ||||||  ||||| ||||||  |||||||||||      
T  11119277 aactcgacttagattataacaagttagaaggacaaattccatcatcattatttaacttgactcaacttgttgcattaggttgttctaataataaattaga 11119178  T
Q  311 aggtccattgccgaataaaattacagg 337  Q
     |||||  |||| || |||||||||||    
T  11119177 tggtcccctgcccaacaaaattacagg 11119151  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 11119655 - 11119555
Alignment:
Q  49 tgtcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatct 148  Q
    |||||||||||||||||| | |||||||||||  |||||| |||| |||||   | ||||||||| |||||||||||| ||| |||||| ||||||||||    
T  11119655 tgtcaaacaaatttcaaaaattagatttgagtcataacaaaattgaaggtgtggttccaacatcaatttcaaaccttcaacaactcattcacttggatct 11119556  T
Q  149 t 149  Q
    |    
T  11119555 t 11119555  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 8524325 - 8524203
Alignment:
Q  51 tcaaacaaatttcaaataatagatttgagtggtaacaagattggaggtgaactaccaacatcactttcaaaccttcgacatctcattaacttggatcttt 150  Q
    |||||||| ||||||  | ||| |||||||  |||||| |||| |||||| || ||||||||||| ||||||||||| ||||||||| |||||||| |||    
T  8524325 tcaaacaattttcaagaattagttttgagtaataacaaaattgaaggtgagcttccaacatcactatcaaaccttcgtcatctcatttacttggatgttt 8524226  T
Q  151 catacaattcattaagcagtcaa 173  Q
    ||||||||||||| ||| |||||    
T  8524225 catacaattcatttagcggtcaa 8524203  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 15590791 - 15590744
Alignment:
Q  70 tagatttgagtggtaacaagattggaggtgaactaccaacatcacttt 117  Q
    ||||||||||||||||||| |||| |||||| || |||||||||||||    
T  15590791 tagatttgagtggtaacaaaattgaaggtgagctgccaacatcacttt 15590744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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