View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5656-Insertion-3 (Length: 1157)
Name: NF5656-Insertion-3
Description: NF5656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5656-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 38 - 863
Target Start/End: Complemental strand, 17618250 - 17617413
Alignment:
| Q |
38 |
cagattagggtttctggcttaaaagaatcaaatccggtattcattattataaaaccacaatccacaatccaaacatggtctaaaagaaaaacaattaagt |
137 |
Q |
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| T |
17618250 |
cagattagggtttctggcttaaaagaatcaaatcaggtattcattatgata---ccacaatccacaatccaaacatggtctaaaagaaaaacaattaagt |
17618154 |
T |
|
| Q |
138 |
acaaaccaaatcatggcaaaaagaaaagctaataacctgaatagctaactctctggtagggcatatgcagagagcttgaggagccttcatgtttggatca |
237 |
Q |
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| T |
17618153 |
acaaaccaaatcaaggcaaaaagaaaagcatataacctgaatagctaactctctagtagggcatatgcagagagcttgaggagccttcatgtttggatca |
17618054 |
T |
|
| Q |
238 |
acacgactgagcattccaagcacgaaacaagtggttttaccagaaccattacgtgcctgtgcaatcaaatccttatgtggagggttaagaatcatcggca |
337 |
Q |
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| T |
17618053 |
acacgactgagcattccgaggacaaaacaagtggttttaccagaaccattacgtgcctgtgcaatcaaatccttatgtggagggttaagaatcatcggca |
17617954 |
T |
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| Q |
338 |
aggttatttcttgaattttgctaggctttataaaccccatctccacatagagtcccttcagtagctccggtgagagggaaagctcttcgaatgctgcagc |
437 |
Q |
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| T |
17617953 |
aggttatttcttgaattttgctaggctttataaaccccatctccacatagagtcccttcagtagctccggagagagggaaagctcttcgaatgttgcggc |
17617854 |
T |
|
| Q |
438 |
agatgtgtaaggagagtaccccgagttaacctcctacaacaaaattcaaaaaccaaatgatttaaagttaatatcctgccttgattttaaagcgaaagaa |
537 |
Q |
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| T |
17617853 |
agatgtgtaaggagagtaccccgagttaacctcctacacgaaaattcaaaaaccctatgagttaaagttaatttcttgccttgattttaaagccaaggaa |
17617754 |
T |
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| Q |
538 |
gaaagaagatcaatgtcgaaccgtttcaatattagagtcattaggaccgccgggcaagttgggagaacttttgttctcatcgataattaatgcttcgaac |
637 |
Q |
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| T |
17617753 |
gaaagaagatcaatgtcgaaccgtttcaatattagagtcattaggaccgccgggcaagttgggagaacttttgttctcatcgataattaatgcttcgaac |
17617654 |
T |
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| Q |
638 |
gacaggctttctacagccaagggaggttgtgaaggttcttctgccattataggaaa---tgataaaaagaagaaaacgagatttaactcttagggttagg |
734 |
Q |
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| T |
17617653 |
gataggctttctacagcggagggaggttgtgaaggttcttctgccattataggaaatgatgataaaaagaagaaaacgagattttactcttagggttagg |
17617554 |
T |
|
| Q |
735 |
gttagggttatatatggaggaggaaatagaggttgtgaaacttttatattaacaaagtga------------atatatagagagggagttagcttaaaaa |
822 |
Q |
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| T |
17617553 |
gttagggttatatatggaggaggaaatagaggttgtgaaaattttatattaacaaagtgaagcacagaaaatatatatagagaaggagttagcttaaaaa |
17617454 |
T |
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| Q |
823 |
gaaagcaagttcaagtttgcgtagaaacaaagtgggacttg |
863 |
Q |
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| T |
17617453 |
gaaagcaagttcaagtttgcgtagaaacaaagtgtgacttg |
17617413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 959
Target Start/End: Complemental strand, 17617411 - 17617345
Alignment:
| Q |
896 |
aggcaacttca-tgttgcgtagaaataa-gcaacttcaaatatgtaagtg-aatcaacggtaatttt |
959 |
Q |
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| T |
17617411 |
aggcaacttcaatgttgcatagaaataaagcaacttcaaatatataagtgaaatcaacggtaatttt |
17617345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 170 - 413
Target Start/End: Complemental strand, 27070135 - 27069892
Alignment:
| Q |
170 |
taacctgaatagctaactctctggtagggcatatgcagagagcttgaggagccttcatgtttggatcaacacgactgagcattccaagcacgaaacaagt |
269 |
Q |
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| T |
27070135 |
taacctgaatagccaactctctagtaggacaaatacatagagcttgaggagcttgcaaattgggatcaaccctactaagcatcccaagattaaaacaagt |
27070036 |
T |
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| Q |
270 |
ggttttaccagaaccattacgtgcctgtgcaatcaaatccttatgtggagggttaagaatcatcggcaaggttatttcttgaattttgctaggctttata |
369 |
Q |
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| T |
27070035 |
agtttttccagaaccattatgtgcttgagcaatcaaatccctatgtggaggattaagaatcatgggcaaactcttagcttgaattttgctaggtttttca |
27069936 |
T |
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| Q |
370 |
aaccccatctccacatagagtcccttcagtagctccggtgagag |
413 |
Q |
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| T |
27069935 |
aacttcatctccacatataatcccttcaaaagctccggcgagag |
27069892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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