View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5656-Insertion-4 (Length: 1011)

Name: NF5656-Insertion-4
Description: NF5656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5656-Insertion-4
NF5656-Insertion-4
[»] chr6 (36 HSPs)
chr6 (279-943)||(19214781-19215449)
chr6 (281-913)||(13548340-13548963)
chr6 (414-654)||(31876743-31876986)
chr6 (414-650)||(7457111-7457350)
chr6 (351-649)||(18700624-18700915)
chr6 (308-477)||(8848272-8848444)
chr6 (277-501)||(8909810-8910026)
chr6 (279-344)||(23094601-23094666)
chr6 (279-335)||(19382999-19383055)
chr6 (279-343)||(21393420-21393484)
chr6 (702-911)||(7457415-7457624)
chr6 (278-337)||(19002767-19002826)
chr6 (277-343)||(15907087-15907153)
chr6 (279-340)||(14603972-14604033)
chr6 (266-335)||(23160781-23160850)
chr6 (702-874)||(31876515-31876682)
chr6 (279-335)||(17724582-17724638)
chr6 (271-343)||(31877207-31877279)
chr6 (277-340)||(32616896-32616959)
chr6 (278-335)||(8848080-8848136)
chr6 (279-335)||(2666146-2666202)
chr6 (280-344)||(14603728-14603792)
chr6 (279-343)||(21683171-21683235)
chr6 (277-344)||(17102627-17102694)
chr6 (278-337)||(18691734-18691793)
chr6 (308-398)||(18691926-18692017)
chr6 (279-342)||(18801469-18801532)
chr6 (277-343)||(14463489-14463555)
chr6 (279-343)||(20881992-20882056)
chr6 (436-532)||(17587511-17587607)
chr6 (278-333)||(15180448-15180503)
chr6 (306-340)||(18670235-18670269)
chr6 (277-335)||(31569307-31569364)
chr6 (278-343)||(7456841-7456906)
chr6 (290-335)||(18175922-18175967)
chr6 (290-335)||(18223834-18223879)
[»] scaffold0164 (2 HSPs)
scaffold0164 (280-739)||(4799-5257)
scaffold0164 (296-344)||(1235-1283)
[»] chr3 (23 HSPs)
chr3 (277-759)||(6079471-6079939)
chr3 (500-934)||(11028317-11028752)
chr3 (751-1006)||(6079195-6079447)
chr3 (278-513)||(11028071-11028298)
chr3 (553-657)||(11441041-11441145)
chr3 (467-566)||(11441157-11441256)
chr3 (279-340)||(15212737-15212798)
chr3 (279-340)||(15251956-15252017)
chr3 (279-340)||(22155376-22155437)
chr3 (279-335)||(9767934-9767990)
chr3 (279-335)||(46124028-46124084)
chr3 (279-337)||(53157279-53157337)
chr3 (279-344)||(41935235-41935300)
chr3 (279-335)||(21972645-21972701)
chr3 (279-335)||(21995076-21995132)
chr3 (277-344)||(18740860-18740927)
chr3 (278-344)||(24552580-24552646)
chr3 (278-344)||(24558719-24558785)
chr3 (307-384)||(11441309-11441386)
chr3 (278-344)||(24555665-24555731)
chr3 (277-337)||(51425362-51425422)
chr3 (278-341)||(7566963-7567026)
chr3 (278-331)||(14163410-14163463)
[»] chr8 (21 HSPs)
chr8 (8-279)||(41169232-41169503)
chr8 (285-755)||(21349404-21349878)
chr8 (308-649)||(23126451-23126800)
chr8 (278-336)||(23120521-23120579)
chr8 (599-654)||(40390116-40390171)
chr8 (277-343)||(8223728-8223794)
chr8 (599-654)||(29634211-29634266)
chr8 (278-335)||(508261-508318)
chr8 (278-335)||(16047108-16047165)
chr8 (278-343)||(43974806-43974871)
chr8 (278-335)||(45537327-45537384)
chr8 (292-343)||(44508137-44508188)
chr8 (488-554)||(40390274-40390340)
chr8 (279-344)||(22216423-22216488)
chr8 (488-533)||(29634390-29634435)
chr8 (299-337)||(8213510-8213548)
chr8 (278-344)||(29634727-29634793)
chr8 (277-335)||(29783111-29783169)
chr8 (306-335)||(23126936-23126965)
chr8 (278-335)||(37257762-37257819)
chr8 (306-343)||(44967472-44967509)
[»] scaffold0017 (2 HSPs)
scaffold0017 (433-938)||(38726-39228)
scaffold0017 (279-382)||(38602-38705)
[»] chr4 (11 HSPs)
chr4 (301-892)||(51030170-51030753)
chr4 (278-335)||(43593848-43593905)
chr4 (279-340)||(13757135-13757196)
chr4 (278-343)||(50377325-50377390)
chr4 (279-343)||(16612222-16612286)
chr4 (279-343)||(18811321-18811385)
chr4 (277-342)||(16526368-16526433)
chr4 (278-335)||(35577351-35577408)
chr4 (279-343)||(1701212-1701276)
chr4 (277-335)||(42563574-42563632)
chr4 (306-343)||(52374283-52374320)
[»] chr2 (16 HSPs)
chr2 (277-584)||(13652479-13652775)
chr2 (713-938)||(13652778-13652999)
chr2 (402-683)||(24864002-24864287)
chr2 (278-354)||(24863911-24863987)
chr2 (279-344)||(2707128-2707193)
chr2 (279-343)||(25417080-25417144)
chr2 (279-394)||(24049087-24049202)
chr2 (277-343)||(24079503-24079569)
chr2 (279-344)||(31898578-31898643)
chr2 (279-334)||(29406693-29406748)
chr2 (293-335)||(28384652-28384694)
chr2 (278-335)||(39907542-39907599)
chr2 (294-335)||(45073819-45073860)
chr2 (306-337)||(25330899-25330930)
chr2 (488-554)||(24049259-24049325)
chr2 (277-335)||(38981529-38981587)
[»] chr5 (14 HSPs)
chr5 (312-649)||(40802119-40802464)
chr5 (277-335)||(22362555-22362613)
chr5 (279-424)||(32722019-32722161)
chr5 (279-343)||(42883067-42883131)
chr5 (277-331)||(21112709-21112763)
chr5 (278-335)||(38925436-38925493)
chr5 (789-874)||(11349511-11349597)
chr5 (285-335)||(27032683-27032733)
chr5 (278-344)||(29391358-29391424)
chr5 (277-335)||(35328808-35328866)
chr5 (278-333)||(42920363-42920418)
chr5 (279-333)||(12563068-12563122)
chr5 (278-340)||(20667559-20667621)
chr5 (281-343)||(22545808-22545870)
[»] chr1 (14 HSPs)
chr1 (382-613)||(25137646-25137882)
chr1 (277-343)||(15723285-15723351)
chr1 (835-916)||(19190469-19190550)
chr1 (281-344)||(2248044-2248107)
chr1 (599-654)||(48280307-48280362)
chr1 (279-340)||(44201669-44201730)
chr1 (279-343)||(19193801-19193865)
chr1 (278-335)||(46123010-46123067)
chr1 (279-335)||(41476075-41476131)
chr1 (277-335)||(46351888-46351946)
chr1 (307-344)||(51094588-51094625)
chr1 (296-344)||(25613992-25614040)
chr1 (279-344)||(9041637-9041702)
chr1 (488-533)||(48280486-48280531)
[»] chr7 (13 HSPs)
chr7 (307-532)||(26645969-26646194)
chr7 (403-537)||(6768555-6768689)
chr7 (279-337)||(9456941-9456999)
chr7 (277-329)||(48644159-48644211)
chr7 (277-343)||(18535660-18535727)
chr7 (702-880)||(26645614-26645787)
chr7 (277-344)||(27258277-27258344)
chr7 (278-335)||(10206658-10206715)
chr7 (278-327)||(39703135-39703184)
chr7 (278-329)||(1723428-1723479)
chr7 (296-335)||(3568527-3568566)
chr7 (282-337)||(5380119-5380174)
chr7 (318-387)||(2660320-2660389)
[»] scaffold0337 (1 HSPs)
scaffold0337 (277-340)||(786-849)
[»] scaffold0553 (1 HSPs)
scaffold0553 (279-344)||(6549-6614)
[»] scaffold0077 (1 HSPs)
scaffold0077 (279-344)||(52531-52596)
[»] scaffold0072 (1 HSPs)
scaffold0072 (279-335)||(46284-46340)
[»] scaffold0039 (3 HSPs)
scaffold0039 (599-654)||(83917-83972)
scaffold0039 (279-344)||(102232-102297)
scaffold0039 (278-365)||(84210-84297)
[»] scaffold0179 (1 HSPs)
scaffold0179 (279-344)||(28435-28500)
[»] scaffold0003 (1 HSPs)
scaffold0003 (288-344)||(163144-163200)
[»] scaffold0214 (2 HSPs)
scaffold0214 (277-343)||(29227-29293)
scaffold0214 (279-343)||(21707-21771)
[»] scaffold0557 (1 HSPs)
scaffold0557 (279-343)||(6435-6499)
[»] scaffold0041 (1 HSPs)
scaffold0041 (277-343)||(32274-32338)
[»] scaffold0281 (1 HSPs)
scaffold0281 (282-344)||(4580-4642)
[»] scaffold0422 (1 HSPs)
scaffold0422 (289-334)||(10386-10431)
[»] scaffold0590 (1 HSPs)
scaffold0590 (299-343)||(8958-9002)
[»] scaffold0320 (1 HSPs)
scaffold0320 (278-337)||(14206-14265)
[»] scaffold0283 (1 HSPs)
scaffold0283 (306-343)||(13606-13643)


Alignment Details
Target: chr6 (Bit Score: 512; Significance: 0; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 279 - 943
Target Start/End: Original strand, 19214781 - 19215449
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgc 378  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  19214781 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctaccgcgctaacgcatgtatctacacaaaaatgataggttggaaaataaaatgc 19214880  T
Q  379 tacttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattg 478  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19214881 tacttttgaatagtagctattctatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattgttatttattaattg 19214980  T
Q  479 aaatagttgtaaacataagataattgacatatctcacatttaacacacttc--atactatcaaatatgcacacaataaaatagaaatataatgaaacata 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  19214981 aaatagttgtaaacataagataattgacatatctcacatttaacacacttcatatactatcaaatatgcacacaataaaatagaaatataatgaaacata 19215080  T
Q  577 agtaaattataacatcaacttgttatctaaaacc----tttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataa-t 671  Q
    || |||||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  19215081 agaaaattataacatcaacttgttatctaaaaccttaatttcattgtgattccaaatgcacaattaatctctttagccctttgccattcaaaaaataatt 19215180  T
Q  672 tctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaa 771  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  19215181 tctttagcactttgcatctcagaagcctaaaataaagctttttacataattacttcattaaaatatattttagaacatgtatata-atttaccttttgaa 19215279  T
Q  772 ctttctcccggtccttatatggttcttattctccactttatggttgaggttggaatgagtttaggggttgaacatggataaattatacttgagtaacaca 871  Q
    |||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||    
T  19215280 ctttctcccaacccttatatggttcttattctccactctatggttgaggttggaatgagtttagaggttgaatatgggtaaagtatacttgagtaacaca 19215379  T
Q  872 aagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 943  Q
    |||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19215380 aagtaaatatcatataagtccagaggtac-aaacac-aaaaattgtgtctttatttataggtatataggaag 19215449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 281 - 913
Target Start/End: Original strand, 13548340 - 13548963
Alignment:
Q  281 tagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgcta 380  Q
    |||||||||||||| || || | | |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||||||||| ||||||||||| ||    
T  13548340 tagcgtccagacgggcattctcatgcccgtctgtccgctttttctactgcgctaacgcat--atctacacaaagatgataggttgaaaaagaaaatgtta 13548437  T
Q  381 cttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaa 480  Q
    |||| |||||||   |||  ||||||||| ||||||||||||||  | |||   ||||||||||||||||||||||||||||| ||||||||||||| ||    
T  13548438 ctttggaatagtctttattctatgaataa-gagatataaatagatagcaagaatataagagaggattagaacacactataattgttatttattaattcaa 13548536  T
Q  481 atagttgtaaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatat-aatgaaacataagt 579  Q
    |||||||||||||||||| |||||||||||||  || |||||||||||||||||||| || |||| |    | |||||||||||| |||||||| || |     
T  13548537 atagttgtaaacataagacaattgacatatctttcacttaacacacttcatactatctaagatgctc----ttaaatagaaatataaatgaaacttagga 13548632  T
Q  580 aaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaat---taatctctttagccctttgccattcaaaa-aataa-ttct 674  Q
    ||||||||| | |||   |||||||||||||||||||||||||| ||| ||||||||   ||||||||||||||||||||||||||||| | ||| ||||    
T  13548633 aaattataataccaatccgttatctaaaacctttcattgtgatttcaaatgcacaattaataatctctttagccctttgccattcaaaagagtaatttct 13548732  T
Q  675 ttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaactt 774  Q
    |||||||||||||| ||| ||||||||| ||||||||  |||||||| ||||||||||||   | |||| ||||||    |||||||||| || || |||    
T  13548733 ttagcactttgcatttcagaagcctaaagtaaagtttgctacataatcacttcattaaaa--aaattcaaaacatg----tatatttacctttagagctt 13548826  T
Q  775 tctcccggtccttatatggttcttattctccactttatggttgaggttggaatgagtttaggggttgaacatggataaattatacttgagtaacacaaag 874  Q
    | ||||  ||||  |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |||| ||||||||||||||||||||    
T  13548827 tttcccactcct--tatggttcttattctccactctatggttgaggttgaaatgagtttagaggttgaacttgggtaaagtatacttgagtaacacaaag 13548924  T
Q  875 taaatatcaaataagtccggaggtacaaaacacaaaaaa 913  Q
      ||||| |||||||| | ||||||||||| ||||||||    
T  13548925 ccaatattaaataagtacagaggtacaaaatacaaaaaa 13548963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 414 - 654
Target Start/End: Complemental strand, 31876986 - 31876743
Alignment:
Q  414 atataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagataattgacatatctc 513  Q
    |||||||||||  ||||  |||||||||| ||||  |||||||  ||||| ||||| ||||||  ||||  || |||| |||||||||||||||||||||    
T  31876986 atataaatagatagtaaaagaataagagatgatttaaacacaccgtaattgttattaattaatacaaatgattttaaagataagataattgacatatctc 31876887  T
Q  514 acatttaacacacttc----atactatcaaatatgcacacaataaaatagaaatat-aatgaaacataagtaaattataacatcaacttgttatctaaaa 608  Q
     || | ||||||||||    |||||||| || |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||  ||| |||||||    
T  31876886 tcactcaacacacttcatacatactatccaagatgctcacaataaaatagaaatataaatgaaacataagaaaattataatatcaacccgttttctaaaa 31876787  T
Q  609 cctttcattgtgattccaattgcacaattaatctctttagcccttt 654  Q
    ||  ||||||||||||||| |||| ||||||||| |||||||||||    
T  31876786 cc--tcattgtgattccaaatgcataattaatctttttagcccttt 31876743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 414 - 650
Target Start/End: Original strand, 7457111 - 7457350
Alignment:
Q  414 atataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagataattgacatatctc 513  Q
    ||||||||| || ||||  ||||||||||||||||||||||||  ||||| ||||| ||||||  |||| ||| |||| |||||||||||||||||||||    
T  7457111 atataaataaacagtaaaagaataagagaggattagaacacaccgtaattgttattaattaatacaaatggttttaaagataagataattgacatatctc 7457210  T
Q  514 acatttaacacactt----catactatcaaatatgcacacaataaaatagaaatat-aatgaaacataagtaaattataacatcaacttgttatctaaaa 608  Q
     || | |||||||||    ||||| | | || |||| ||||||||||||||||||| ||||||||||||  ||||||||| ||||||  ||| || ||||    
T  7457211 tcactcaacacacttcatacatacgacccaagatgctcacaataaaatagaaatataaatgaaacataaaaaaattataatatcaacccgttttcgaaaa 7457310  T
Q  609 cctttcattgtgattccaattgcacaattaatctctttagcc 650  Q
    ||  ||||||||||||||| |||| ||||||||| |||||||    
T  7457311 cc--tcattgtgattccaaatgcataattaatctttttagcc 7457350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 351 - 649
Target Start/End: Original strand, 18700624 - 18700915
Alignment:
Q  351 aaaaatgataggttggaaaagaaaatgctacttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattaga 450  Q
    |||| |||||||||| ||||||||||| ||||||||| || |||||||  ||| |||||||||||||| |||||  ||||| ||||||||||||||||      
T  18700624 aaaagtgataggttgaaaaagaaaatgttacttttgagtaatagctattttataaataaagagatatagatagatagtaagagaataagagaggatta-- 18700721  T
Q  451 acacactataattattatttattaattgaaatagttgtaaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacaca 550  Q
        | ||| |||  |||| ||||||  ||| |||| ||  ||| ||||| ||||||||| || || | | ||||||||||||||||    |||||||||    
T  18700722 ----attattatt--tattaattaatacaaacagttttattcatgagatagttgacatatttctcactaatcacacttcatactatcctcgatgcacaca 18700815  T
Q  551 ataaaatagaaatataa-tgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagc 649  Q
    ||||| || |||||||| |||||| || | ||||||||| |||||    ||||| ||||| ||||||||||||||||| |||| ||||||||||||||||    
T  18700816 ataaagtataaatataaatgaaacgtagggaaattataatatcaagcctttatcgaaaacttttcattgtgattccaaatgcaaaattaatctctttagc 18700915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 308 - 477
Target Start/End: Original strand, 8848272 - 8848444
Alignment:
Q  308 cgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaa-tgataggttggaaaagaaaatgctacttttgaatagtagctatggtatgaa 406  Q
    ||||||||||| ||||||||| ||| ||  |||||||||| |  |||| |||||||||| ||||||||||  ||||||||| || |||||||   || ||    
T  8848272 cgtctgtccgcattttctacttcgcaaacacatgtatctaaattaaaagtgataggttgaaaaagaaaatattacttttgagtaatagctatttcataaa 8848371  T
Q  407 taaagagatataaatagacggtaagtgaataagagaggatt--agaacacactataattattatttattaatt 477  Q
    ||||||||||||||||||  ||||| |||||||||||||||  ||||||||| ||||||||||||||||||||    
T  8848372 taaagagatataaatagatagtaagagaataagagaggattagagaacacaccataattattatttattaatt 8848444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 277 - 501
Target Start/End: Complemental strand, 8910026 - 8909810
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaat 376  Q
    |||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| || |||| |||||| | |||| |||||||||  ||||||||||    
T  8910026 atactagcgtccagacgggcactctcgtgcccgtctgcccgctttttctactgcgcaaacgcatatatctaaataaaagtgataggttaaaaaagaaaat 8909927  T
Q  377 gctacttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaat 476  Q
    | ||||||||| ||| || |||   || ||||||  ||||||        ||||| |||||||||||||||||||||||  |||||| |||||| |||||    
T  8909926 gttacttttgagtagcagttattccatcaataaaaggatata--------gtaagagaataagagaggattagaacacatcataattgttattttttaat 8909835  T
Q  477 tgaaatagttgtaaacataagataa 501  Q
      ||| | || || |||||||||||    
T  8909834 acaaacaattttagacataagataa 8909810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 23094666 - 23094601
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  23094666 actagcgtccaaacggatactcccgttcccgtctgtccgctctttctactgcgctaacgcatgtat 23094601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 19383055 - 19382999
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  19383055 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaa 19382999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 21393484 - 21393420
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  21393484 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgcatgta 21393420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 702 - 911
Target Start/End: Original strand, 7457415 - 7457624
Alignment:
Q  702 aataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaactttctcccggtccttatatggttcttatt 801  Q
    |||||||||| ||||||||| ||||| ||||| ||||||||||||||||    |||||||||| || || |||||||||   ||   |||||||||||||    
T  7457415 aataaagtttgttacataatcacttcgttaaagtgtatttcagaacatg----tatatttacctttagagctttctccc--accacttatggttcttatt 7457508  T
Q  802 ctccactttatggttgaggttggaatgagtttaggggttgaacatggataa-attatacttgagtaaca-----caaagtaaatatcaaataagtccgga 895  Q
    ||| ||| |||| |||||| || |||| ||||||  ||||||| ||| ||| | |||||||||||||||     ||||| |||||  ||||||||||  |    
T  7457509 ctctactctatgtttgaggctgaaatgtgtttagctgttgaacttgggtaatagtatacttgagtaacaaaaagcaaagcaaataaaaaataagtccaaa 7457608  T
Q  896 ggtacaaaacacaaaa 911  Q
    |||||||| |||||||    
T  7457609 ggtacaaatcacaaaa 7457624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 19002826 - 19002767
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||    
T  19002826 tactagcgtccagacgggcactcccgtacccgtctgtccgctttttctaccgcgctaatg 19002767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 15907153 - 15907087
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    ||||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  15907153 atactagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgcatgta 15907087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 14604033 - 14603972
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||    
T  14604033 actagcgtccagacgggcactcccgtacccgtctgtccactttttctactgcgctaacgcat 14603972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 23160850 - 23160781
Alignment:
Q  266 atgcattatggatactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||  | |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  23160850 atgcattattcacactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaa 23160781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 702 - 874
Target Start/End: Complemental strand, 31876682 - 31876515
Alignment:
Q  702 aataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaactttctcccggtccttatatggttcttatt 801  Q
    |||||||||| ||| ||||| ||||| ||||| |||||||||||||||||||||    ||||| || || |||||||||    |||||  ||||||||||    
T  31876682 aataaagtttgttaaataatcacttcgttaaagtgtatttcagaacatgtatat----ttacctttagagctttctcccaccacttat--ggttcttatt 31876589  T
Q  802 ctccactttatggttgaggttggaatgagtttaggggttgaacatggataa-attatacttgagtaacacaaag 874  Q
    ||| ||| |||| ||||| ||| |||||||||||  ||||||| ||| ||| | ||||||||||||||| ||||    
T  31876588 ctctactctatgcttgagattgaaatgagtttagctgttgaacttgggtaatagtatacttgagtaacaaaaag 31876515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 17724638 - 17724582
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||    
T  17724638 actagcgtccagacgggcactcccatgcccgtctgtccgctttttctactgcgctaa 17724582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 31877279 - 31877207
Alignment:
Q  271 ttatggatactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||| ||||||||||||||| | |||||||||  ||||||||||||| ||||||||||||||| |||||||    
T  31877279 ttatgggtactagcgtccagaccggcactcccgtatccgtctgtccgctctttctactgcgctaacgcatgta 31877207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 32616896 - 32616959
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    |||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||    
T  32616896 atactaacgtccagacgggcactcccgtgcccgtctgtccgctttttctactacgctaacgcat 32616959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 8848080 - 8848136
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||    
T  8848080 tactagcgtccagaggg-cactcccgtgcccgtctgtccgctttttctactgcgctaa 8848136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 2666202 - 2666146
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||    
T  2666202 actagcatccagacgggcactcccgtgcccgtctgtccgttttttctactgcgctaa 2666146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 344
Target Start/End: Original strand, 14603728 - 14603792
Alignment:
Q  280 ctagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||| |||||| |||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  14603728 ctagcgtcaagacggccactccggtgcccgtctgtccgctttttctactgcactaacgcatgtat 14603792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 21683171 - 21683235
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||| ||||||| ||||||||| |||||||||||||| |||||| |||||||| |||||||    
T  21683171 actagcgttcagacgggcactcccgtgcccgtctgtccgctctttctattgcgctaacgcatgta 21683235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 17102694 - 17102627
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||||| ||||||| | ||| |||||||||| |||||||||||||||  |||||||    
T  17102694 atactagcgtccagacgggcactcccatgcccatctgtccgctctttctactgcgctaacacatgtat 17102627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 18691734 - 18691793
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    |||||||||| |||||| || |||||| ||| ||||||||||||||||||||||||||||    
T  18691734 tactagcgtctagacgggcattcccgtgcccatctgtccgctttttctactgcgctaatg 18691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 18691926 - 18692017
Alignment:
Q  308 cgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaa-tgataggttggaaaagaaaatgctacttttgaatagtagctat 398  Q
    ||||||||||| ||||||||||||| ||  |||||||||| |  |||| |||||||||| ||||||||||| ||||||||| || |||||||    
T  18691926 cgtctgtccgcattttctactgcgcaaacacatgtatctaaattaaaagtgataggttgaaaaagaaaatgttacttttgagtaatagctat 18692017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 18801532 - 18801469
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgt 342  Q
    ||||||||||| |||| ||||||||| ||||||||| |||| |||||||| |||||||||||||    
T  18801532 actagcgtccaaacgggcactcccgtgcccgtctgttcgctctttctactacgctaatgcatgt 18801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 14463489 - 14463555
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||||| ||||||||  ||||| ||| |||| ||||||||||||||| |||||||    
T  14463489 atactagcgtccagacgggcactcccgcgcccgtttgttcgctctttctactgcgctaacgcatgta 14463555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 20882056 - 20881992
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||| ||||||| ||||||||| || ||||||||||| |||||| |||||||| |||||||    
T  20882056 actagcgttcagacgggcactcccgtgcctgtctgtccgctctttctattgcgctaacgcatgta 20881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 436 - 532
Target Start/End: Complemental strand, 17587607 - 17587511
Alignment:
Q  436 taagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagataattgacatatctcacatttaacacacttcata 532  Q
    ||||||||||||| ||||| |  |||||||| |||||| ||  ||||| || |||||||||||||||| |||  |||| || |||||| ||||||||    
T  17587607 taagagaggattataacacgccgtaattattgtttatttatacaaataattttaaacataagataattaacacgtctctcacttaacatacttcata 17587511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 15180448 - 15180503
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgct 333  Q
    ||||||||||||||| || ||||  || |||||||||| |||||||||||||||||    
T  15180448 tactagcgtccagacagaaactcatgtgcccgtctgtctgctttttctactgcgct 15180503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 18670269 - 18670235
Alignment:
Q  306 cccgtctgtccgctttttctactgcgctaatgcat 340  Q
    |||||||||||||||||||||||||||||| ||||    
T  18670269 cccgtctgtccgctttttctactgcgctaacgcat 18670235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 31569307 - 31569364
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||| || |||||| |||||| || |||||||||||||| |||||||||||||||    
T  31569307 atactagcatctagacgggcactcc-gtgcccgtctgtccgctctttctactgcgctaa 31569364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 7456841 - 7456906
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||| ||||| |||||| ||||||| | | ||||||| |||| ||||||||||||||| |||||||    
T  7456841 tacttgcgtctagacgggcactcccctgctcgtctgttcgctctttctactgcgctaacgcatgta 7456906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 18175922 - 18175967
Alignment:
Q  290 gacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||| ||| |||||||||||||| |||||||| ||||||    
T  18175922 gacggacactctcgtgcccgtctgtccgctctttctactacgctaa 18175967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 18223879 - 18223834
Alignment:
Q  290 gacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||| ||| |||||||||||||| |||||||| ||||||    
T  18223879 gacggacactctcgtgcccgtctgtccgctctttctactacgctaa 18223834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 280 - 739
Target Start/End: Complemental strand, 5257 - 4799
Alignment:
Q  280 ctagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgct 379  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5257 ctagcgtccagacggacactcc-gttcccgtctgttcgctttttctactgcgttaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgct 5159  T
Q  380 acttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattga 479  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  5158 acttttgaatagtagctattctatgaataaagagatataaatagacggtaagtgaataagagaggattataacacactataattgttatttattaattga 5059  T
Q  480 aatagttgtaaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatataatgaaacataagt 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5058 aatagttgtaaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatataatgaaacataagt 4959  T
Q  580 aaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataattctttagc 679  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4958 aaattgtaacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataattctttagc 4859  T
Q  680 actttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtat 739  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4858 actttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtat 4799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 1235 - 1283
Alignment:
Q  296 cactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||||| |||||||||||||||||||||||| | ||||| ||||||    
T  1235 cactcccgtacccgtctgtccgctttttctactgtgttaatgtatgtat 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 277 - 759
Target Start/End: Complemental strand, 6079939 - 6079471
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaat 376  Q
    |||||||||| ||||| | |||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  6079939 atactagcgttcagaccggcacttccgtgcccgtctgtccgctttttctactgcgctaacgcatatatctacacaaaaatgataggttagaaaagaaaat 6079840  T
Q  377 gctacttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaat 476  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  6079839 gctacttttgaatagtagctattctatgaataaagagatataaatagacagtaagtgaata--agaggattagaacacactataattgttatttattaat 6079742  T
Q  477 tgaaatagttgtaaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatataatgaaacata 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  6079741 tgaaatagttgtaaacataagataattgacatatctcacatttaacacacttcatagtatcaaatatgcacacaataaaatagaaatat-atgaaacata 6079643  T
Q  577 agtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataattcttt 676  Q
    || ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||          
T  6079642 agaaaattataacatcaacttgttatctgaaacctttcattttgattccaaatgcacaattaatctctttagccctttgccattcaaaaaataa------ 6079549  T
Q  677 agcactttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatat 759  Q
         ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6079548 -----tttgcatctcaaaggcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatatatatatat 6079471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 500 - 934
Target Start/End: Original strand, 11028317 - 11028752
Alignment:
Q  500 aattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatataa-tgaaacataagtaaattataacatcaacttg 598  Q
    ||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| || |||| ||||||||| |||| | ||    
T  11028317 aattggcatatctctcatttaacacacttcatactatctaagatgcacacaataaaatagaaatataaatgatacttaagaaaattataatatcatcctg 11028416  T
Q  599 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataatt-ctttagcactttgcatctcaaaagc 697  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |           
T  11028417 ttatctaaaaccttacattgtgattccaaatgcacaattaatctctttagccctttgccattcaaaaaataatttctctagcactttgcttgttttcttt 11028516  T
Q  698 ctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaac--tttctcccggtccttatatggtt 795  Q
     ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||||||  |||||| |  |||||||  ||||    
T  11028517 -taaaataaagtttgttacataatcacttaattaaaatgtatttcagaacatgtatataaatttaccttttgaacactttctctcactccttat--ggtt 11028613  T
Q  796 cttattctccactttatggttgaggttggaatgagtttaggggttgaacatggataaattatacttgagtaacacaaagtaaatatcaaataagtccgga 895  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||| ||||||||||||||||  |     
T  11028614 cttattctccactctatggttgaggttggaatgagtttaggggttgaacttgggtaaagtttacttgagtaacacaaagcaaatatcaaataagtcgagt 11028713  T
Q  896 ggtacaaaacacaaaaaattgtgtctttatttataggta 934  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  11028714 ggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 751 - 1006
Target Start/End: Complemental strand, 6079447 - 6079195
Alignment:
Q  751 tatatatatttaccgtttgaactttctcccggtccttatatggttcttattctccactttatggttgaggttggaatgagtttaggggttgaacatggat 850  Q
    ||||||||| || | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  6079447 tatatatatataacttttgaactttctcccagtccttatatggttcttattctccactctatggttgaggttggaatgagtttaggggttgaacatgggt 6079348  T
Q  851 aaattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnnnnnnn 950  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||           
T  6079347 aaagtatacttgagtaacacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaag--aaaaa 6079250  T
Q  951 nnnnccaaattatttttctttgttcatcatctctatttacatcagactttcatttt 1006  Q
        |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  6079249 aaaaccaaatta-ttttctttgttcatcatctctatttacatcacactttcatttt 6079195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 278 - 513
Target Start/End: Original strand, 11028071 - 11028298
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatg 377  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||      ||||||| |||||||||||    
T  11028071 tactagcgtccagacgg-cactcccgtgcccgtctgtccgctttttctactgcgctaacgcatgtatctacacaa------taggttgaaaaagaaaatg 11028163  T
Q  378 ctacttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaatt 477  Q
     ||||||||||||||||||||  ||||||||||| |||| ||||||||| |||| |||||||||| || ||||||||||||||||| |||||||||||||    
T  11028164 ttacttttgaatagtagctattttatgaataaagggataaaaatagacgataagagaataagaga-gaatagaacacactataattgttatttattaatt 11028262  T
Q  478 gaaatagttgtaaacataagataattgacatatctc 513  Q
     |||||||||||||||||| ||||||| ||||||||    
T  11028263 caaatagttgtaaacataacataattggcatatctc 11028298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 553 - 657
Target Start/End: Complemental strand, 11441145 - 11441041
Alignment:
Q  553 aaaatagaaatataa-tgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccc 651  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||||||  |||||||||||| ||||| | ||||||||| | ||| |||||||||||||||||    
T  11441145 aaaatagaaatataaatgaaatataagaaaattataatatcaacccgttatctaaaacttttcactctgattccaa-tacacgattaatctctttagccc 11441047  T
Q  652 tttgcc 657  Q
    ||||||    
T  11441046 tttgcc 11441041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 467 - 566
Target Start/End: Complemental strand, 11441256 - 11441157
Alignment:
Q  467 atttattaattgaaatagttgtaaacataagataattgacatatctcacatttaacacactt-catactatc-aaatatgcacacaataaaatagaaata 564  Q
    ||||||||||  |||||||| ||||||||||||||||  |||||||| || ||||||||||| |||| |||| |||||||| ||||||||||||||||||    
T  11441256 atttattaataaaaatagttttaaacataagataatt--catatctctcacttaacacacttgcatattatctaaatatgctcacaataaaatagaaata 11441159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 15212737 - 15212798
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||    
T  15212737 actagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgcat 15212798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 15251956 - 15252017
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||    
T  15251956 actagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgcat 15252017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 22155376 - 22155437
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| ||||    
T  22155376 actagcgtccagacggacactcccgtgcccgtctgtccgttttttctactacgctaacgcat 22155437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 9767990 - 9767934
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  9767990 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaa 9767934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 46124028 - 46124084
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  46124028 actagcgttcagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaa 46124084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 53157279 - 53157337
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    |||||||||||||||| ||||| ||| |||||||||||||| |||||||||||||||||    
T  53157279 actagcgtccagacgggcactctcgtgcccgtctgtccgctctttctactgcgctaatg 53157337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 41935300 - 41935235
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||  |||||||    
T  41935300 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgttaacacatgtat 41935235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 21972645 - 21972701
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||    
T  21972645 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttctactacgctaa 21972701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 21995076 - 21995132
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||    
T  21995076 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttctactacgctaa 21995132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 18740927 - 18740860
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||||| |||| |||| | |||||||||||| |||||| |||||||||| ||||||    
T  18740927 atactagcgtccagacgggcacttccgtgcgcgtctgtccgctctttctaatgcgctaatgtatgtat 18740860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 24552580 - 24552646
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||||||||||  ||  ||||||||| ||||||||||||||||||| | ||||||    
T  24552580 tactagcgtccagacggacactcatgtgtccgtctgtctgctttttctactgcgctaaagtatgtat 24552646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 24558719 - 24558785
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||||||||||  ||  ||||||||| ||||||||||||||||||| | ||||||    
T  24558719 tactagcgtccagacggacactcttgtgtccgtctgtctgctttttctactgcgctaaagtatgtat 24558785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 11441386 - 11441309
Alignment:
Q  307 ccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgctacttt 384  Q
    ||||| |||||||| || |||||||||||||||||||| || | |||||| ||| ||| |||||||||||| ||||||    
T  11441386 ccgtcagtccgcttcttttactgcgctaatgcatgtatttaaataaaaataatatgttcgaaaagaaaatgttacttt 11441309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 24555665 - 24555731
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||||||||||  ||  || |||||| ||||||||||||||||||| | ||||||    
T  24555665 tactagcgtccagacggacactcttgtgtccatctgtctgctttttctactgcgctaaagtatgtat 24555731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 277 - 337
Target Start/End: Complemental strand, 51425422 - 51425362
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    ||||||||||||||| || || || ||| |||||||||||||| ||||||||| |||||||    
T  51425422 atactagcgtccagatgggcattctcgtgcccgtctgtccgctctttctactgtgctaatg 51425362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 7566963 - 7567026
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatg 341  Q
    ||||||||||||||||  ||||||||| ||||||| |||||  ||||| ||||||||| |||||    
T  7566963 tactagcgtccagacgagcactcccgtacccgtctatccgccctttctgctgcgctaacgcatg 7567026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 14163410 - 14163463
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcg 331  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||| ||| |||||||    
T  14163410 tactagcgttcagacgggcactctcgtgcccgtctgtccgctctttttactgcg 14163463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 41169503 - 41169232
Alignment:
Q  8 gtatctttgtccttgctgatattgtagaagtttgaacttccttgaacaaagacaatgtttttgtttgattttgttgcatttggtgtgggctgggatgaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41169503 gtatctttgtccttgctgatattgtagaagtttgaacttccttgaacaaagacaatgtttttgtttgattttgttgcatttggtgtgggctgggatgaag 41169404  T
Q  108 tgccaactttcttgattttggtaggttttcacttccacctgaattgagttggaattcggattggaggattgcaaatttagcagttgcaacacatgttgtt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41169403 tgccaactttcttgattttggtaggttttcacttccacctgaattgagttggaattcggattggaggattgcaaatttagcagttgcaacacatgtcgtt 41169304  T
Q  208 ttggccttcttagtagttttagcagatgattatttaacatttgcagcagttgaagtagatgcattatggata 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41169303 ttggccttcttagtagttttagcagatgattatttaacatttgcagcagttgaagtagatgcattatggata 41169232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 285 - 755
Target Start/End: Original strand, 21349404 - 21349878
Alignment:
Q  285 gtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgctacttt 384  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |||| || | |||| |||||| ||  ||||||||||| ||||||    
T  21349404 gtccagacgtacactcccgtgcccgtctgtccgctctttctactgcgctaatgcacgtatttaaataaaagtgatagattcaaaaagaaaatgttacttt 21349503  T
Q  385 tgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaatag 484  Q
      ||| ||||||||   ||||||||| | ||| |||||||   |||| |||||||| ||||||||||  ||   | |||  ||||||| |||  ||||||    
T  21349504 caaatggtagctattaaatgaataaaaatatacaaatagatactaagagaataagaaaggattagaatgcaacttgattgctatttat-aatacaaatag 21349602  T
Q  485 ttgtaaacataagataattgacatatctcacatttaacacacttcatactatc-aaatatgcacacaataaaatagaaatataa-tgaaacataagtaaa 582  Q
    || | ||||||||||||| ||||| ||||||  |||||||||||| ||  ||| ||| | || ||||||||||||||||||||  ||||||||||| ||     
T  21349603 ttttgaacataagataatagacatttctcac--ttaacacacttcgtatcatctaaagacgctcacaataaaatagaaatataggtgaaacataagaaat 21349700  T
Q  583 ttataacatcaacttgttat--ctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataa-ttctttagc 679  Q
    |||||| ||||||  |||||  || |||| ||||  ||||||| ||| | ||| |||||||| |||||||||||||| || ||||||||| |||||||      
T  21349701 ttataatatcaacccgttatatcttaaacatttcgctgtgatttcaaatacaccattaatctatttagccctttgcccttgaaaaaataatttctttaaa 21349800  T
Q  680 actttgcatctcaaaagcctaaaataaagttttttacataattacttcattaaa--atgtatttcagaacatgtatat 755  Q
    ||||||||| | | ||| |||||||||| ||| ||||||| | ||||||| |||  || |||| ||||||||||||||    
T  21349801 actttgcatttaagaagtctaaaataaaatttgttacatagtcacttcatcaaaatatatattccagaacatgtatat 21349878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 308 - 649
Target Start/End: Complemental strand, 23126800 - 23126451
Alignment:
Q  308 cgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaa-tgataggttggaaaagaaaatgctacttttgaatagtagctatggtatgaa 406  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |  |||| |||||||||| ||||||||||| ||||||||| || |||||||   || ||    
T  23126800 cgtctgtccgcattttctactgcgcaaatacatgtatctaaattaaaagtgataggttgaaaaagaaaatgttacttttgagtaatagctatttcataaa 23126701  T
Q  407 taaagagatataaatagacggtaagtgaataagagaggatt--agaacacactataattattatttattaatt----gaaatagttgtaaacataagata 500  Q
    |||||||||||| |||||  ||||| |||| ||||||||||  |||||||||  || ||||||||||||||||     ||| |||| ||  ||| |||||    
T  23126700 taaagagatatagatagatagtaagagaattagagaggattagagaacacaccgtagttattatttattaattaatacaaacagttttattcatgagata 23126601  T
Q  501 attgacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatat-aatgaaacataagtaaattataacatcaacttgt 599  Q
     ||||||||  || || | | || |||||||||||||    | |||||||||||| || |||||| ||| |||| || | ||||||||| ||||| |  |    
T  23126600 gttgacatacttctcactaatcagacttcatactatcctcaacgcacacaataaagtataaatataaataaaacgtagggaaattataatatcaagtctt 23126501  T
Q  600 tatctaaaacctttcattgtgattccaattgcacaattaatctctttagc 649  Q
    |||| ||||| ||||||||||||||||| |||| ||||||||||||||||    
T  23126500 tatcgaaaacttttcattgtgattccaaatgcaaaattaatctctttagc 23126451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 23120521 - 23120579
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaat 336  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  23120521 tactagcgtccagacggacactcccgtgcccatctgtccgctttttctactgcgctaat 23120579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 599 - 654
Target Start/End: Complemental strand, 40390171 - 40390116
Alignment:
Q  599 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 654  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  40390171 ttatctaaaacatttcattgtgattccaaatgcacaattaatctctttagcgcttt 40390116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 8223728 - 8223794
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||||| ||||||||| ||| |||||||||| |||||||||| |||| |||||||    
T  8223728 atactagcgtccagacgggcactcccgtgcccttctgtccgctctttctactgcactaacgcatgta 8223794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 599 - 654
Target Start/End: Complemental strand, 29634266 - 29634211
Alignment:
Q  599 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 654  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||    
T  29634266 ttatctaaaacatttcattgtgattcaaaatgcacaattaatctctttagcgcttt 29634211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 508261 - 508318
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||| ||||| ||| ||||||||||||| |||| |||||||||||    
T  508261 tactagcgtccagacgggcactctcgtgcccgtctgtccgcattttttactgcgctaa 508318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 16047165 - 16047108
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||| |||| |||| || ||||||||||| |||||||||||||||    
T  16047165 tactagcgtccagacgggcacttccgtgcctgtctgtccgctctttctactgcgctaa 16047108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 43974871 - 43974806
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    ||||||||||||||||| |||||||||  |||| |||||||| |||||| |||||||| |||||||    
T  43974871 tactagcgtccagacgggcactcccgtgtccgtttgtccgctctttctattgcgctaacgcatgta 43974806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 45537384 - 45537327
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||| |||||| || ||||||||| |||||||||||| |||||||    
T  45537384 tactagcgtccagacgggcactcctgtgcccgtctgttcgctttttctaccgcgctaa 45537327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 44508137 - 44508188
Alignment:
Q  292 cggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||| |||| |||||||||||||| ||||||||||||||| |||||||    
T  44508137 cggacacttccgtacccgtctgtccgctctttctactgcgctaacgcatgta 44508188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 488 - 554
Target Start/End: Complemental strand, 40390340 - 40390274
Alignment:
Q  488 taaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataa 554  Q
    ||||||||| |||||||||||||||| || |||||||||||||||| ||| || | || ||||||||    
T  40390340 taaacataaaataattgacatatctctcacttaacacacttcatacaatccaagacgctcacaataa 40390274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 22216423 - 22216488
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||| |||||||||  | ||||||||| |||||||| |||||||| | ||||||    
T  22216423 actagcgtccagacgggcactcccgtatctgtctgtccgttttttctattgcgctaacgtatgtat 22216488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 29634435 - 29634390
Alignment:
Q  488 taaacataagataattgacatatctcacatttaacacacttcatac 533  Q
    ||||||||| |||||||||||||||| || ||||||||||||||||    
T  29634435 taaacataaaataattgacatatctctcacttaacacacttcatac 29634390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 8213548 - 8213510
Alignment:
Q  299 tcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  8213548 tcccgtgcccgtctgtccgctctttctactgcgctaatg 8213510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 29634793 - 29634727
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||||| ||||||| ||||||||| ||||| |||| ||| || ||||||||||||  |||||||    
T  29634793 tactagcgttcagacgggcactcccgtgcccgtttgtctgctcttactactgcgctaacacatgtat 29634727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 29783169 - 29783111
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||||| |||| ||||  |||||||||||| |||| |||| ||||||    
T  29783169 atactagcgtccagacgggcacttccgtgtccgtctgtccgcattttttactacgctaa 29783111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 23126965 - 23126936
Alignment:
Q  306 cccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||||||||||||||||    
T  23126965 cccgtctgtccgctttttctactgcgctaa 23126936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 37257819 - 37257762
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||| ||||||| || | ||||  ||||||||| |||||||||||||||||||    
T  37257819 tactagcgttcagacgggcatttccgtgtccgtctgtctgctttttctactgcgctaa 37257762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 44967472 - 44967509
Alignment:
Q  306 cccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  44967472 cccgtctgtccgctctttctactgcgctaacgcatgta 44967509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 433 - 938
Target Start/End: Original strand, 38726 - 39228
Alignment:
Q  433 gaataagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagataattgacatatctcacatttaacacacttcata 532  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  38726 gaataagagaggattagaacatactataattgttatttatcaattcaaatagttgtaaacataagacaattgacatatctctcacttaacacacttcata 38825  T
Q  533 ctatcaaatatgcacacaataaaatagaaatat-aatgaaacataagtaaattataacatcaacttgttatctaaaacctttcattgtgattccaattgc 631  Q
    ||||| || |||| |||| |||||||| ||||| ||| |||| |||| ||||||||| ||||||||||||| ||||| |||||||||||||||||| |||    
T  38826 ctatctaagatgctcacagtaaaatagtaatataaataaaacttaagaaaattataatatcaacttgttatttaaaatctttcattgtgattccaaatgc 38925  T
Q  632 acaattaatctctttagccctttgccattcaaaaaataa-ttctttagcactttgcatctcaaaagcctaaaataaagttttttacataattacttcatt 730  Q
    ||||||| |||||||| | | |||||||||||| ||||| ||||||||||| |||||| | | |||||||||||||||||| ||||||||| ||||||||    
T  38926 acaattattctctttatctcgttgccattcaaagaataatttctttagcaccttgcatttgagaagcctaaaataaagtttgttacataatcacttcatt 39025  T
Q  731 aaaatgtatttcagaacatgtatatatatttaccgtttgaactttctcccggtccttatatggttcttattctccactttatggttgaggttggaatgag 830  Q
    ||||| ||||||| ||||||||||||    |||| |  || |||||||||  ||||  |||||||||||||||||||| ||||||| |||||||||||||    
T  39026 aaaatatatttcaaaacatgtatata----taccttcagagctttctcccattcct--tatggttcttattctccactctatggtttaggttggaatgag 39119  T
Q  831 tttaggggttgaacatggataaattatacttgagtaacacaaagtaaatatcaaataagtcc-ggaggtacaaaacacaaaaaattgtgtctttatttat 929  Q
    ||||||||||||   ||| |||| |||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||    
T  39120 tttaggggttgagtttggctaaagtatacttgagtaacacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttat 39219  T
Q  930 aggtatata 938  Q
    | |||||||    
T  39220 aagtatata 39228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 279 - 382
Target Start/End: Original strand, 38602 - 38705
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgc 378  Q
    |||||| ||||||||| |||||||||  |||||||||  |||||||||||||||||| | ||||||| |||||||||| |||||||| |||| ||||||     
T  38602 actagcatccagacgggcactcccgtgtccgtctgtcaactttttctactgcgctaacgaatgtatccacacaaaaattataggttgaaaaaaaaaatgt 38701  T
Q  379 tact 382  Q
    ||||    
T  38702 tact 38705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 3e-69; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 301 - 892
Target Start/End: Original strand, 51030170 - 51030753
Alignment:
Q  301 ccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgctacttttgaatagtagctatgg 400  Q
    |||| ||||||||||||||||||||||||||||||  | ||| |||| | |||| | |||||||| |||  |||||| || |||  |||||||| ||       
T  51030170 ccgtgcccgtctgtccgctttttctactgcgctaactcgtgtttctaaataaaactaataggttgaaaacaaaaatgttaatttcaaatagtagttactc 51030269  T
Q  401 tatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagata 500  Q
    || |||||||||||||||||||||  ||||| |||||| |||| |||||||||||| ||| || ||||| ||||||  |||| ||| |||||||| ||||    
T  51030270 tacgaataaagagatataaatagatagtaagagaataaaagagaattagaacacaccatagttgttattaattaatacaaatggttttaaacatatgata 51030369  T
Q  501 attgacatatctcacatttaacacacttcatac----tatcaaatatgcacacaataaaatagaaatataa-tgaaacataagtaaattataacatcaac 595  Q
    ||||||||||||| || || |||||||||||||    ||||  | |||| | ||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  51030370 attgacatatctctcactttacacacttcatacatactatcttagatgctcgcaataaaatagaaatataaatgaaacataagaaaattataatatcaac 51030469  T
Q  596 ttgttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataa-ttctttagcactttgcatctcaaa 694  Q
      ||| |||||||||||         |||||| |||| ||||||||| ||||||| |||   ||||||||||||| ||||||| ||||||  || |||      
T  51030470 ccgttttctaaaacctt---------ttccaaatgcataattaatctttttagcctttttatattcaaaaaataatttctttaacactttttatttcatt 51030560  T
Q  695 agcctaaaataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaactttctcccggtccttatatggt 794  Q
    ||| || |||||||||| ||||||||| ||||| | ||| ||||||||||||||||    |||||||||| || || |||||| ||   |||  | ||||    
T  51030561 agcatagaataaagtttgttacataatcacttcgtcaaagtgtatttcagaacatg----tatatttacctttagagctttcttccacccct--tgtggt 51030654  T
Q  795 tcttattctccactttatggttgaggttggaatgagtttaggggttgaacatggataa-attatacttgagtaacacaaagtaaatatcaaataagtcc 892  Q
    |||||||||| ||| |||| || || ||| ||||||||||   ||||||| ||| ||| | |||||||||||||||||||| |||||  ||||||||||    
T  51030655 tcttattctctactctatgcttcagcttgaaatgagtttaactgttgaacttgggtaatagtatacttgagtaacacaaagcaaataaaaaataagtcc 51030753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 43593905 - 43593848
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  43593905 tactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaa 43593848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 13757135 - 13757196
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    |||||||||||||||| ||||||||| ||||||||| |||| |||||||||| |||||||||    
T  13757135 actagcgtccagacgggcactcccgtgcccgtctgttcgctctttctactgcactaatgcat 13757196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 50377325 - 50377390
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    ||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||| ||| |||||||    
T  50377325 tactagcgttcagacgggcactcccgtgcccgtctgtccgctctttctactgcgttaacgcatgta 50377390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 16612222 - 16612286
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||| |||||||||| || | |||||||||||||| ||||||||||||||| |||||||    
T  16612222 actagcgtccggacggacacttccatacccgtctgtccgctctttctactgcgctaacgcatgta 16612286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 18811385 - 18811321
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||| || |||||| ||||||||||| || ||||||||||||||| |||||||    
T  18811385 actagcgtccagacgggcattcccgtgcccgtctgtccactctttctactgcgctaacgcatgta 18811321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 16526433 - 16526368
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgt 342  Q
    |||||||||||||||||| ||||||||| ||  |||| ||| ||||||||||||||||||| ||||    
T  16526433 atactagcgtccagacgggcactcccgtgcctatctgaccgttttttctactgcgctaatgtatgt 16526368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 35577351 - 35577408
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  35577351 tactagcgtccagacgggcactcccgtgcccgtctgtccgcattttttattgcgctaa 35577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 1701212 - 1701276
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||| ||||||||| ||||||| ||| || |||||| |||||||| |||||||    
T  1701212 actagcgtccagacgggcactcccgtgcccgtctatccactctttctattgcgctaacgcatgta 1701276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 42563574 - 42563632
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||| | || ||||  ||| | ||||||||||||||||||||||||||||    
T  42563574 atactagcgtccaaaagggcactttcgtgctcgtctgtccgctttttctactgcgctaa 42563632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 52374283 - 52374320
Alignment:
Q  306 cccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  52374283 cccgtctgtccgctctttctactgcgctaacgcatgta 52374320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 1e-53; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 277 - 584
Target Start/End: Original strand, 13652479 - 13652775
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaat 376  Q
    ||||||||||||| |||  ||||  ||| ||||||||| || |||||| ||||| ||||  |||||||||| ||| ||||||||||||| |||||||||     
T  13652479 atactagcgtccatacgtgcactgacgtgcccgtctgtacgttttttcaactgcactaacacatgtatctaaacataaatgataggttgaaaaagaaaac 13652578  T
Q  377 gctacttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaat 476  Q
    | |||||||||||||||| |||  ||||||||||||||||||||||||  ||||| || |||| |||||||||||            |||||||||||||    
T  13652579 gttacttttgaatagtagttattctatgaataaagagatataaatagatagtaagagagtaagtgaggattagaa------------attatttattaat 13652666  T
Q  477 tgaaatagttgtaaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatat-aatgaaacat 575  Q
      ||||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||| || |||  |||||||||||| |||||| |||||||| |    
T  13652667 acaaatagttgtaaacataagattattgacatatctctcacttaacacacttcataatatctaagatgttcacaataaaatataaatataaatgaaactt 13652766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 713 - 938
Target Start/End: Original strand, 13652778 - 13652999
Alignment:
Q  713 ttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaactttctcccggtccttatatggttcttattctccactttat 812  Q
    ||||||||| ||||||||||| |||||||||||||||||||||    ||||| || || |||||||||  ||||||   | ||||||||||| ||| |||    
T  13652778 ttacataatcacttcattaaactgtatttcagaacatgtatat----ttacctttagagctttctcccactccttagg-gtttcttattctctactctat 13652872  T
Q  813 ggttgaggttggaatgagtttaggggttgaacatggataaattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacac-aaaa 911  Q
    ||||||| |||||||||||||||||||||||| ||  |||| |||||||||||||||||||| ||||||||||||||||   ||||||||  ||| ||||    
T  13652873 ggttgagattggaatgagtttaggggttgaacttgagtaaagtatacttgagtaacacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaa 13652972  T
Q  912 aattgtgtctttatttataggtatata 938  Q
    ||||| |||||||||||||| ||||||    
T  13652973 aattgggtctttatttatagttatata 13652999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 402 - 683
Target Start/End: Original strand, 24864002 - 24864287
Alignment:
Q  402 atgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagataa 501  Q
    |||||||||||  |||| |||||  ||| | |||||||| | |||||||||||||  |  || |||| |||||||  ||||| || ||||||||||||||    
T  24864002 atgaataaagatttatagatagattgtaggagaataagaaatgattagaacacaccgtcgttgttatatattaatacaaataattttaaacataagataa 24864101  T
Q  502 tt-gacatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaat-ataatgaaacataagtaaattataacatcaa-cttg 598  Q
    || |||||||||| || ||||||||||||||| ||| ||| |||  ||||||||||||| ||| | ||||||||||||| ||||||||| ||||| | |     
T  24864102 tttgacatatctctcacttaacacacttcatattataaaagatgggcacaataaaataggaattaaaatgaaacataaggaaattataatatcaagcctt 24864201  T
Q  599 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagccctttgccattcaaaaaataat-tctttagcactt 683  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||| | || |||||| ||| |||||| |||||    
T  24864202 ttatctaaaacttttctttgtgattccaaatgcacaattaatctctttagcactttgtcgttaaaaaaacaatctctttaacactt 24864287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 24863911 - 24863987
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaa 354  Q
    ||||||||||||||||| ||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  24863911 tactagcgtccagacgggcactctcgtgcctgtctgtccgctttttctactgcgctaacgcatgtatctacacaaaa 24863987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 2707193 - 2707128
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  2707193 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtatgtat 2707128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 25417080 - 25417144
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    ||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||| |||||||    
T  25417080 actagcgtccagatggacactcctgtgcccgtctgtccgctctttctactgcgctaacgcatgta 25417144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 394
Target Start/End: Original strand, 24049087 - 24049202
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgc 378  Q
    |||||||| ||||||| ||||| ||| ||||| ||||||||||||||||| ||| || |||  | |||| |||||| |||||||||| |||||||||       
T  24049087 actagcgttcagacgggcactcgcgtacccgtttgtccgctttttctactacgcaaacgcacatgtctatacaaaactgataggttgtaaaagaaaaatt 24049186  T
Q  379 tacttttgaatagtag 394  Q
    ||||||||| ||||||    
T  24049187 tacttttgagtagtag 24049202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 24079569 - 24079503
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||| | |||||||||  ||||||||||||| ||||||||||||||| |||||||    
T  24079569 atactagcgtccagacaggcactcccgtgtccgtctgtccgctctttctactgcgctaacgcatgta 24079503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 31898643 - 31898578
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||| ||||||||| ||||||| |||||| ||||||||||||||| | ||||||    
T  31898643 actagcgtccagacgggcactcccgtgcccgtctatccgctctttctactgcgctaacgtatgtat 31898578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 29406748 - 29406693
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgcta 334  Q
    ||||||||||| |||| |||||  || |||||||||||||||||||||||||||||    
T  29406748 actagcgtccaaacgggcactcatgtgcccgtctgtccgctttttctactgcgcta 29406693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 28384694 - 28384652
Alignment:
Q  293 ggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  28384694 ggacactcccgtacccgtccgtccgctttttctactgcgctaa 28384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 39907599 - 39907542
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||| |||| |||  ||||||||||||||| |||||| |||||||||||||||||    
T  39907599 tactagcatccaaacgtgcactcccgttcccgtttgtccgttttttctactgcgctaa 39907542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 45073819 - 45073860
Alignment:
Q  294 gacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  45073819 gacactcccgtgcccgtctgtccgctttttccactgcgctaa 45073860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 25330899 - 25330930
Alignment:
Q  306 cccgtctgtccgctttttctactgcgctaatg 337  Q
    ||||||||||||||||||||||||||||||||    
T  25330899 cccgtctgtccgctttttctactgcgctaatg 25330930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 24049259 - 24049325
Alignment:
Q  488 taaacataagataattgacatatctcacatttaacacacttcatactatcaaatatgcacacaataa 554  Q
    ||||||||| |||||| ||||||||| || |||||| | ||||||||||| || |||| ||||||||    
T  24049259 taaacataaaataattaacatatctctcacttaacagagttcatactatccaagatgctcacaataa 24049325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 38981587 - 38981529
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||| |||||| ||||| ||| || ||||||||||| |||||| ||||||||    
T  38981587 atactagcgtctagacgggcactctcgtacctgtctgtccgctctttctattgcgctaa 38981529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 312 - 649
Target Start/End: Complemental strand, 40802464 - 40802119
Alignment:
Q  312 tgtccgctttttctactgcgctaatgcatgtatctacacaaaaa-tgataggttggaaaagaaaatgctacttttgaatagtagctatggtatgaataaa 410  Q
    ||||||| ||||||||||||| ||  ||| |||||| |  |||| |||||||||| ||||||||||| ||||||||| || ||| |||   || ||||||    
T  40802464 tgtccgcattttctactgcgcaaacacatatatctaaattaaaagtgataggttgaaaaagaaaatgttacttttgagtaatagttatttcataaataaa 40802365  T
Q  411 gagatataaatagacggtaagtgaataagagaggatt--agaacacactataattattatttattaatt----gaaatagttgtaaacataagataattg 504  Q
    ||||||||  ||||  ||||| ||||||||||| |||  |||||||||| |||||||||||||||||||     ||| |||| ||  | | ||||| |||    
T  40802364 gagatatagctagatagtaagagaataagagagtattagagaacacactgtaattattatttattaattaatacaaacagttttattcctgagatagttg 40802265  T
Q  505 acatatctcacatttaacacacttcatactatcaaatatgcacacaataaaatagaaatat-aatgaaacataagtaaattataacatcaacttgttatc 603  Q
    |||||| || ||   | ||||||||||||||||    |||||||||||||| || | |||| |||||||| || | ||||||||| ||||| |  |||||    
T  40802264 acatatttctcaccaatcacacttcatactatcctcgatgcacacaataaagtatagatataaatgaaacgtagggaaattataatatcaagtctttatc 40802165  T
Q  604 taaaacctttcattgtgattccaattgcacaattaatctctttagc 649  Q
     ||||| ||||||||||||||||| || | ||||||||||||||||    
T  40802164 aaaaacttttcattgtgattccaaatgtaaaattaatctctttagc 40802119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 22362555 - 22362613
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22362555 atactagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaa 22362613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 279 - 424
Target Start/End: Original strand, 32722019 - 32722161
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgc 378  Q
    |||||||||||||||| ||||||||| |||||| |||  ||||||||||||||| ||  |||  || || ||||||||||||||| | |||| ||||||     
T  32722019 actagcgtccagacgggcactcccgtgcccgtc-gtctactttttctactgcgcaaacacat--atttaaacaaaaatgataggtagaaaaataaaatgt 32722115  T
Q  379 tacttttgaatagtagctatggtatgaataaagagatataaataga 424  Q
    ||||||||| |||||| |||   |||||||||||| ||||||||||    
T  32722116 tacttttgagtagtagatattacatgaataaagaggtataaataga 32722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 42883131 - 42883067
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||| |||||||    
T  42883131 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttttactgcgctaacgcatgta 42883067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 21112709 - 21112763
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcg 331  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  21112709 atactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcg 21112763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 38925436 - 38925493
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||    
T  38925436 tactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactacgctaa 38925493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 789 - 874
Target Start/End: Original strand, 11349511 - 11349597
Alignment:
Q  789 tatggttcttattctccactttatggttgaggttggaatgagtttaggggttgaacatggataa-attatacttgagtaacacaaag 874  Q
    |||||||||||||||| ||| |||| ||||||||| |||||||||||  ||||||| ||| ||| | ||||||||||||||| ||||    
T  11349511 tatggttcttattctctactctatgcttgaggttgaaatgagtttagctgttgaacttgggtaatagtatacttgagtaacaaaaag 11349597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 27032733 - 27032683
Alignment:
Q  285 gtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  27032733 gtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaa 27032683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 29391424 - 29391358
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||||||| |||| | ||| ||||||    
T  29391424 tactatcgtccagacggacactcccgtgcccgtttgtccgctttttctattgcgttgatgtatgtat 29391358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 35328808 - 35328866
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||||| || || ||| |||||||||||||| |||||||||||||||    
T  35328808 atactagcgtccagacgggcattcacgtgcccgtctgtccgctctttctactgcgctaa 35328866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 42920363 - 42920418
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgct 333  Q
    ||||||||||||||||| || || | | |||||||||||||| |||||||||||||    
T  42920363 tactagcgtccagacgggcattctcatgcccgtctgtccgctctttctactgcgct 42920418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 12563122 - 12563068
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgct 333  Q
    ||||||||||| || |||||||| || | |||||||||| |||||||||||||||    
T  12563122 actagcgtccaaacagacactcctgtgctcgtctgtccgttttttctactgcgct 12563068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 278 - 340
Target Start/End: Original strand, 20667559 - 20667621
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    ||||||||| |||| || ||||||||| ||||| |||||| ||| ||||||||||||| ||||    
T  20667559 tactagcgttcagatgggcactcccgtgcccgtttgtccgttttatctactgcgctaacgcat 20667621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 22545870 - 22545808
Alignment:
Q  281 tagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    ||||||| |||||| ||||||||| |||||||||||||| | | || |||||||| |||||||    
T  22545870 tagcgtctagacgggcactcccgtgcccgtctgtccgctctatttattgcgctaacgcatgta 22545808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 3e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 382 - 613
Target Start/End: Complemental strand, 25137882 - 25137646
Alignment:
Q  382 ttttgaatagtagctatggtatgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaa 481  Q
    |||| ||||||||||||  || ||||||||| |||||||||||  ||||  |||||| |||| ||||||| |||| ||| || ||||| ||||||  |||    
T  25137882 ttttaaatagtagctattctacgaataaagaaatataaatagatagtaaaagaataaaagagaattagaatacaccatagttgttattaattaatacaaa 25137783  T
Q  482 tagttgtaaacataagataattgacatatctcacatttaacacacttcatac----tatcaaatatgcacacaataaaatagaaatataa-tgaaacata 576  Q
    | ||| |||| ||| ||||||||||||||||| || || ||||| |||||||    ||||  | |||| ||||||||||||||||||||| |||||||||    
T  25137782 tggttttaaatatatgataattgacatatctctcactttacacatttcatacatactatcttagatgctcacaataaaatagaaatataaatgaaacata 25137683  T
Q  577 agtaaattataacatcaacttgttatctaaaaccttt 613  Q
    || ||||||||| ||||||  ||| ||||||||||||    
T  25137682 agaaaattataatatcaacccgttttctaaaaccttt 25137646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 15723351 - 15723285
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  15723351 atactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgcatgta 15723285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 835 - 916
Target Start/End: Complemental strand, 19190550 - 19190469
Alignment:
Q  835 ggggttgaacatggataaattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattg 916  Q
    |||||||||| | | |||| |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190550 ggggttgaacttaggtaaagtatacttgagtaacacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 2248044 - 2248107
Alignment:
Q  281 tagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||  |||||||    
T  2248044 tagcgtccagacggacactcccgtgtccgtctgtccgctctttctactgcgctaacacatgtat 2248107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 599 - 654
Target Start/End: Complemental strand, 48280362 - 48280307
Alignment:
Q  599 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 654  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  48280362 ttatctaaaacatttcattgtgattccaaatgcacaattaatctctttagcgcttt 48280307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 44201730 - 44201669
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    ||||||||| |||||| ||||||||| |||||||||||||| ||||||||||||||| ||||    
T  44201730 actagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgcat 44201669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 19193865 - 19193801
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||| |||||| || || ||||||||||| ||||||||||||||| |||||||    
T  19193865 actagcgtccagacgggcactcctgtgcctgtctgtccgctctttctactgcgctaacgcatgta 19193801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 46123067 - 46123010
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||||| ||||||||| ||||||||| ||| |||| |||||||||||    
T  46123067 tactagcgtccagacgggcactcccgtgcccgtctgttcgcattttttactgcgctaa 46123010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 41476131 - 41476075
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||| |||||||||||||||||  || ||||||||||||||||||||| ||||    
T  41476131 actagcgttcagacggacactcccgtgtccatctgtccgctttttctactgcactaa 41476075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 46351888 - 46351946
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||||  ||||||||| ||| |||||||||| |||||| ||||||||    
T  46351888 atactagcgtccagacgagcactcccgtgcccatctgtccgctctttctattgcgctaa 46351946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 51094625 - 51094588
Alignment:
Q  307 ccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  51094625 ccgtctgtccgctttttctactgcgctaatgtatgtat 51094588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 25614040 - 25613992
Alignment:
Q  296 cactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||||| |||||||||| ||| ||||||||||||||| ||||||||    
T  25614040 cactcccgtgcccgtctgtctgctctttctactgcgctaacgcatgtat 25613992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 9041702 - 9041637
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||||| ||||| ||||||| ||  ||||||||| |||||||||||||  |||||| ||||||    
T  9041702 actagcgtcaagacgaacactcctgtgtccgtctgtctgctttttctactgtactaatgtatgtat 9041637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 48280531 - 48280486
Alignment:
Q  488 taaacataagataattgacatatctcacatttaacacacttcatac 533  Q
    ||||||||| |||||||||||||||| || |||| |||||||||||    
T  48280531 taaacataaaataattgacatatctctcacttaatacacttcatac 48280486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 5e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 307 - 532
Target Start/End: Complemental strand, 26646194 - 26645969
Alignment:
Q  307 ccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgctacttttgaatagtagctatggtatgaa 406  Q
    ||||||||||||||||||| |||||||||  ||| | | || | |||| | |||||||| |||  |||||| || |||   ||| |||||||  || |||    
T  26646194 ccgtctgtccgctttttctcctgcgctaactcatatttttaaataaaactaataggttgaaaacaaaaatgttaatttcagatattagctattctacgaa 26646095  T
Q  407 taaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagataattgac 506  Q
    ||||||||||||||||||  ||||| |||||| |||| |||||||||||| ||| || ||||| ||||||  |||| ||| |||||||| ||||||||||    
T  26646094 taaagagatataaatagatagtaagagaataaaagagaattagaacacaccatagttgttattaattaatacaaatggttttaaacatatgataattgac 26645995  T
Q  507 atatctcacatttaacacacttcata 532  Q
    ||||||| || || ||||||||||||    
T  26645994 atatctctcactttacacacttcata 26645969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 403 - 537
Target Start/End: Original strand, 6768555 - 6768689
Alignment:
Q  403 tgaataaagagatataaatagacggtaagtgaataagagaggattagaacacactataattattatttattaattgaaatagttgtaaacataagataat 502  Q
    |||||||| | ||| |||||||  ||||| |||||||| ||| ||||||| |||  |||||  |||||||||||  |||||||| |||||||||||||||    
T  6768555 tgaataaaaatatacaaatagatagtaagagaataagaaaggtttagaacgcaccctaattgctatttattaatacaaatagttttaaacataagataat 6768654  T
Q  503 tgacatatctcacatttaacacacttcatactatc 537  Q
     |||||||||| || ||||||||||||||| ||||    
T  6768655 agacatatctctcacttaacacacttcatattatc 6768689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 9456941 - 9456999
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  9456941 actagcgtctagacggacactcccgtacccgtctgtccgctttttctattgcgctaatg 9456999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 48644211 - 48644159
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactg 329  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  48644211 atactagcgtccagacggacactctcgtgcccgtctgtccgctttttctactg 48644159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 18535660 - 18535727
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccg-tctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||||||| ||||||||| |||| |||||||||| ||||||||||||||| |||||||    
T  18535660 atactagcgtccagacgggcactcccgtgcccggtctgtccgctctttctactgcgctaacgcatgta 18535727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 702 - 880
Target Start/End: Complemental strand, 26645787 - 26645614
Alignment:
Q  702 aataaagttttttacataattacttcattaaaatgtatttcagaacatgtatatatatttaccgtttgaactttctcccggtccttatatggttcttatt 801  Q
    |||||||||| ||||||||| ||||| | ||| ||||||||||| ||||    |||||||||| || || |||||||||  ||||  ||||||| |||||    
T  26645787 aataaagtttgttacataatcacttcgtcaaagtgtatttcagatcatg----tatatttacctttagagctttctcccactcct--tatggttattatt 26645694  T
Q  802 ctccactttatggttgaggttggaatgagtttaggggttgaacatggataa-attatacttgagtaacacaaagtaaata 880  Q
    ||| |||  ||| ||||| ||| ||| |||||||  ||||||  ||| ||| | |||||||||||||||||||| |||||    
T  26645693 ctctactccatgcttgagcttgaaataagtttagctgttgaatttgggtaatagtatacttgagtaacacaaagcaaata 26645614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 27258277 - 27258344
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||||||||| | | ||||| ||||||    
T  27258277 atactagcatccagacggacactctcgtgcccgtctgtccgctttttctaccgtgttaatgtatgtat 27258344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 10206658 - 10206715
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||||||||| | |||| |||| ||||||||||||||||||| ||||||||||    
T  10206658 tactagcgtccagaccggcacttccgtgcccgtctgtccgctttttccactgcgctaa 10206715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 39703184 - 39703135
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctac 327  Q
    ||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  39703184 tactagcgtccagacgggcactcccgtgcccgtctgtccgctctttctac 39703135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 1723428 - 1723479
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactg 329  Q
    ||||||||||||||||| ||||||||| ||||||||| |||| |||||||||    
T  1723428 tactagcgtccagacgggcactcccgtgcccgtctgttcgctctttctactg 1723479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 335
Target Start/End: Original strand, 3568527 - 3568566
Alignment:
Q  296 cactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  3568527 cactcccgtgcccgtctgtccgctctttctactgcgctaa 3568566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 5380174 - 5380119
Alignment:
Q  282 agcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    ||||| ||||||| ||||||||| |||||||||| ||||||||||| || ||||||    
T  5380174 agcgtgcagacgggcactcccgtgcccgtctgtctgctttttctaccgccctaatg 5380119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 2660389 - 2660320
Alignment:
Q  318 ctttttctactgcgctaatgcatgtatctacacaaaaatgataggttggaaaagaaaatgctacttttga 387  Q
    ||||||||||||||  |||||||| ||||| ||| || ||||||||    ||||||||||||||||||||    
T  2660389 ctttttctactgcgtaaatgcatgcatctaaacataagtgataggtaaacaaagaaaatgctacttttga 2660320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 849 - 786
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcat 340  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  849 atactagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgcat 786  T

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Target: scaffold0553 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 6549 - 6614
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  6549 actagcgtccagacgggcactcccgtacccgtctgtccgctttttctactgcgctaacgtatgtat 6614  T

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Target: scaffold0077 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 52596 - 52531
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  52596 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgcatgtat 52531  T

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Target: scaffold0072 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 46284 - 46340
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaa 335  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  46284 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaa 46340  T

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Target: scaffold0039 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 599 - 654
Target Start/End: Complemental strand, 83972 - 83917
Alignment:
Q  599 ttatctaaaacctttcattgtgattccaattgcacaattaatctctttagcccttt 654  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  83972 ttatctaaaacatttcattgtgattccaaatgcacaattaatctctttagcgcttt 83917  T

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Target: scaffold0039; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 102232 - 102297
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||||| ||||||||| ||||| |||||||| |||||||||||| || ||||||||    
T  102232 actagcgtccagacgggcactcccgtgcccgtttgtccgctctttctactgcgccaacgcatgtat 102297  T

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Target: scaffold0039; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 84297 - 84210
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtatctacacaaaaatgataggttg 365  Q
    |||||||||| |||||| ||||||||| ||| ||||||||||||||||| ||||| || |||  | |||| |||||| ||||| ||||    
T  84297 tactagcgtcgagacgggcactcccgtgcccatctgtccgctttttctattgcgcaaacgcacatttctatacaaaagtgatatgttg 84210  T

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Target: scaffold0179 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 28500 - 28435
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| ||||||    
T  28500 actagcgtccagacaggcactcccatgcccgtctatccgctttttctactgcgctaatgtatgtat 28435  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 163144 - 163200
Alignment:
Q  288 cagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  163144 cagacgggcactcccgtacccatctgtccgctctttctactgcgctaatgcatgtat 163200  T

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Target: scaffold0214 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 29293 - 29227
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||| ||||||||||| |||||||||  ||||||||||||| ||||||| ||||||| |||||||    
T  29293 atactatcgtccagacgggcactcccgtgtccgtctgtccgctctttctaccgcgctaacgcatgta 29227  T

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Target: scaffold0214; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 21707 - 21771
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||| ||||||||| ||||||||| |||   ||||||||||||||||| |||||| |||||||    
T  21707 actagcatccagacgggcactcccgtgcccagttgtccgctttttctactacgctaacgcatgta 21771  T

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Target: scaffold0557 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 6435 - 6499
Alignment:
Q  279 actagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||| ||||||||| ||||||||| || ||||||||||| |||||| |||||||| |||||||    
T  6435 actagcatccagacgggcactcccgtgcctgtctgtccgctctttctattgcgctaacgcatgta 6499  T

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Target: scaffold0041 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 343
Target Start/End: Complemental strand, 32338 - 32274
Alignment:
Q  277 atactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||| ||||||| ||||   || |||||||||||||||||||||||||||||| |||||||    
T  32338 atactagcgtacagacgggcacta--gtgcccgtctgtccgctttttctactgcgctaacgcatgta 32274  T

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Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 4642 - 4580
Alignment:
Q  282 agcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatgcatgtat 344  Q
    |||||||||||||  |||||||| ||||||||||| || ||||||||||||||| | ||||||    
T  4642 agcgtccagacgggtactcccgtgcccgtctgtccactctttctactgcgctaacgtatgtat 4580  T

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Target: scaffold0422 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 10431 - 10386
Alignment:
Q  289 agacggacactcccgttcccgtctgtccgctttttctactgcgcta 334  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||    
T  10431 agacgggcactcccgtgcccgtctgtccgctttttctactgtgcta 10386  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 8958 - 9002
Alignment:
Q  299 tcccgttcccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||    
T  8958 tcccgtgcccgtctgtccgctctttctactgcgctaacgcatgta 9002  T

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Target: scaffold0320 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 14265 - 14206
Alignment:
Q  278 tactagcgtccagacggacactcccgttcccgtctgtccgctttttctactgcgctaatg 337  Q
    ||||||||| |||| || ||||| ||| |||||||||||||| |||||||| ||||||||    
T  14265 tactagcgttcagatgggcactctcgtgcccgtctgtccgctctttctactacgctaatg 14206  T

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Target: scaffold0283 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 13606 - 13643
Alignment:
Q  306 cccgtctgtccgctttttctactgcgctaatgcatgta 343  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  13606 cccgtctgtccgctctttctactgcgctaacgcatgta 13643  T

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