View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5656_low_1 (Length: 485)
Name: NF5656_low_1
Description: NF5656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5656_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 49301895 - 49302351
Alignment:
| Q |
19 |
ctaaagtggtcccaatgtgaatttcaagcctttggtttcctttaaatatatgcagggtccacatgcatcaatgggtaatcctttcctctacaatacctcc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49301895 |
ctaaagtggtcccaatgtgaatttcaagccttttgtttcctttaaatatatgcagggtccacatgcatcaaagggtaatcctttcctctacaatacctcc |
49301994 |
T |
|
| Q |
119 |
attcgtgtcttgtgcaatgccaacacttctgaaggtttcaatcctctaaaggatgtatctttaccagaaattcatctctatggaggtgaagtatctccta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49301995 |
attcgtgtcttgtgcaatgccaacacttctgaaggtttcaatcctctaaaggatgtatctttaccagaaattcatctctatggaggtgaagtatctccta |
49302094 |
T |
|
| Q |
219 |
aactcctttcacttccacctgagaacgccccacgccggtatcttgccttctttgcaggtggtatgcatggcccaattcgcccaattcttctccaacactg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49302095 |
aactcctttcacttccacctgagaacgccccacgccggtatcttgccttctttgcaggtggtatgcatggcccaattcgcccaattcttctccaacactg |
49302194 |
T |
|
| Q |
319 |
gaaaaacagagacaaagatattcttgtcaatgagtatctccctaaaggcatagactactattccataatgctaagctccaagttctgtctttgtccaagt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49302195 |
gaaaaacagagacaaagatattcttgtcaatgagtatctccctaaaggcatagactactattccataatgctaagctccaagttctgtctttgtccaagt |
49302294 |
T |
|
| Q |
419 |
ggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcct |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49302295 |
ggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcct |
49302351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 44629171 - 44629249
Alignment:
| Q |
397 |
caagttctgtctttgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcct |
475 |
Q |
| |
|
|||||| ||| | ||||||||||||| |||||| || || |||||||| |||||| | || | |||||||||||||||| |
|
|
| T |
44629171 |
caagttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagctatatttgcagaatgtgtgcct |
44629249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 477
Target Start/End: Complemental strand, 36514640 - 36514571
Alignment:
| Q |
408 |
tttgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcctat |
477 |
Q |
| |
|
||||||||||||| | |||||||| || ||||||||||| || |||||||||| |||||||| ||||| |
|
|
| T |
36514640 |
tttgtccaagtgggtgggaagtggcaagtccaagaattgttgaggcaatttatgctgaatgtgtacctat |
36514571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 47728010 - 47727958
Alignment:
| Q |
410 |
tgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgc |
462 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
47728010 |
tgtccaagtggatatgaagtggctagtccaagaattgtggaagcaattaatgc |
47727958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University