View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5656_low_2 (Length: 373)
Name: NF5656_low_2
Description: NF5656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5656_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 89 - 361
Target Start/End: Complemental strand, 23968472 - 23968200
Alignment:
| Q |
89 |
ttgcatctatatatctttaagtgtcaattgaaacacagaaaagcagttgaagtcaaagtgtgttcaccttgttttcccttttaaaatttgttagatctga |
188 |
Q |
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| T |
23968472 |
ttgcatctatatatctctaagtgtcaattgaaacacagaaaagcagttgaagtcaaagtgtgttcaccttgttttcccttttaaaatttgttagatctga |
23968373 |
T |
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| Q |
189 |
atgtgaatcttttgttcatttttcactctttcttttagtgcaaatatcaagtatttcaaaaacaatgtgatgtagtgtatctcttctatatggttattag |
288 |
Q |
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| T |
23968372 |
atgtgaatcttttgttcattttttgctctttcttttagtgcaaatatcaagtatttcaaaaacattgtgatgtagtgtatctcttctatatggttattag |
23968273 |
T |
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| Q |
289 |
taattcaaagtggcgtataaatagtgcatgtacgatatttaattttactcactagtagacaatgtaatgatga |
361 |
Q |
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| T |
23968272 |
taattcaaagtggcgtataaatagtgcatgtacgatatttaattttactcactagtagacaatgtaatgatga |
23968200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 23968714 - 23968639
Alignment:
| Q |
18 |
atccatgcacagtacaagagtggatcatgcattagagagtatccataatatcagagaggcttttccaaaggttgca |
93 |
Q |
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| T |
23968714 |
atccatgcacagtacaagagtggatcatgcattagagagtatccataatatcagagaggcttttccaaaggttgca |
23968639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 24020506 - 24020572
Alignment:
| Q |
18 |
atccatgcacagtacaagagtggatcatgcattagagagtatccataatatcagagaggcttttcca |
84 |
Q |
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| T |
24020506 |
atccgtgcgcagtacaggagtggatcatgcattagagagtattcataatatcagagaggcatttcca |
24020572 |
T |
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