View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5657-Insertion-2 (Length: 1091)

Name: NF5657-Insertion-2
Description: NF5657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5657-Insertion-2
NF5657-Insertion-2
[»] chr5 (5 HSPs)
chr5 (6-593)||(39757703-39758294)
chr5 (17-192)||(39764786-39764964)
chr5 (606-715)||(39759799-39759907)
chr5 (408-489)||(39765202-39765284)
chr5 (29-90)||(39764324-39764385)
[»] chr4 (4 HSPs)
chr4 (711-1013)||(52606540-52606848)
chr4 (723-883)||(27301007-27301168)
chr4 (722-849)||(40413574-40413702)
chr4 (723-781)||(29695979-29696037)
[»] chr1 (2 HSPs)
chr1 (712-883)||(386217-386389)
chr1 (723-792)||(50010691-50010760)
[»] chr2 (1 HSPs)
chr2 (723-883)||(7293492-7293653)
[»] chr8 (1 HSPs)
chr8 (723-791)||(42034816-42034884)
[»] scaffold0114 (1 HSPs)
scaffold0114 (721-862)||(38069-38211)
[»] chr7 (3 HSPs)
chr7 (722-792)||(8232650-8232720)
chr7 (722-849)||(36250225-36250353)
chr7 (723-837)||(43988561-43988675)
[»] chr3 (1 HSPs)
chr3 (772-837)||(22977425-22977490)


Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 6 - 593
Target Start/End: Original strand, 39757703 - 39758294
Alignment:
Q  6 caattgtctcaataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39757703 caattgtctcaataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaat 39757802  T
Q  106 gacaataacaacaagatatcaagtgtaccgttaaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtcagaaaggcttctc 205  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39757803 gacaataacaacaagatatcaagtgtaccgttgaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtcagaaaggcttctc 39757902  T
Q  206 ctatgtttaatctaccttttgtttcatcaagtcatacgtcgttgaaatagtggagaaaaggaaaaatttgtttcgaagtagtgaaactcaagacagcaat 305  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39757903 ctatgtttaatctaccttttgtttcatca-gtcatacgtcgttgaaatagtggagaaaaggaaaaatttgtttcgaagtagtgaaactcaagacagcaat 39758001  T
Q  306 gattcagagcagacttcaatacttaaggatgctacttttggggtgggaaaatttgttccctatttgtatgctaacaagagaagtggtggcataggagaga 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39758002 gattcagagcagacttcaatacttaaggatgctacttttggggtgggaaaatttgttccctatttgtatgctaacaagagaagtggtggcataggagaga 39758101  T
Q  406 aaatggttgacaaggaggacaagggtcctttgcaatgacacaagaaaagcctcaagttaacaattgatttactacatagtttgctagcttcaatcataat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39758102 aaatggttgacaaggaggacaagggtcctttgcaatgacacaaaaaaagcctcaagttaacaatggatttactacatagtttgctagcttcaatcataat 39758201  T
Q  506 aatgcagttgcagtctgcttttgcttttaagctgttaaaacctatcaaacacggatacggacacc-----gacacaactaaattttttagaaa 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      |||||| ||||||||||||||||    
T  39758202 aatgcagttgcagtctgcttttgcttttaagctgttaaaacctatgaaacacggatacggacacgacacggacacagctaaattttttagaaa 39758294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 39764786 - 39764964
Alignment:
Q  17 ataatattggacaaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaaactcaaatgaaaaatgacaataac-- 114  Q
    |||||||  ||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||  |||| |||||| || ||      
T  39764786 ataatatcagacaaaaagaagaatttttatggaaatggaatactgctaaatccatacttctttcaagtagtgaaactcatgtgaataatgacgatgacga 39764885  T
Q  115 -aacaagatatcaagtgtaccgttaaagagttggatgccttcactatcaggcttcagggatgttggttttgctttggtc 192  Q
     ||||||| |||||||||||| || |||| ||||||||||||||| ||||||||| ||| || ||||||| || |||||    
T  39764886 taacaagacatcaagtgtaccattgaagaattggatgccttcactgtcaggcttcgggggtgctggtttttctgtggtc 39764964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 606 - 715
Target Start/End: Original strand, 39759799 - 39759907
Alignment:
Q  606 gatcagggaagattgttttatgaatggaaaggatgggtatannnnnnnnnnagatattgtagtagttggaataaagttgtttgagtttgaccggtcaaaa 705  Q
    |||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39759799 gatcagggaagattgttttatgaatggaaaggatgggtatattcttttttg-gatattgtagtagttggaataaagttgtttgagtttgaccggtcaaaa 39759897  T
Q  706 tgataacatt 715  Q
    ||||||||||    
T  39759898 tgataacatt 39759907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 489
Target Start/End: Original strand, 39765202 - 39765284
Alignment:
Q  408 atggttgacaaggaggacaagggtcctttgcaatgacacaagaaaagcctcaagttaacaattgattt-actacatagtttgc 489  Q
    ||||||||||| ||| |||||||||||||||||| ||| | | ||  ||||||||||||||| ||||| ||| ||||||||||    
T  39765202 atggttgacaaagagaacaagggtcctttgcaataacatagggaacacctcaagttaacaatggatttaactccatagtttgc 39765284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 39764324 - 39764385
Alignment:
Q  29 aaaaagaagaatttgtatggaaatggaatagtattaaatccatacttctttcaagtagtgaa 90  Q
    |||| ||||||||| ||||||||||||||||| | ||| |||  |||| |||||||||||||    
T  39764324 aaaaggaagaatttatatggaaatggaatagtctcaaaaccacgcttccttcaagtagtgaa 39764385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 711 - 1013
Target Start/End: Original strand, 52606540 - 52606848
Alignment:
Q  711 acattaaggttctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatcct 810  Q
    ||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  52606540 acattaagggtctgtttgttttgggtgaaagtagtaggaaagattgaaggaggacagaaagtataaggattaacaatctttctatcgtttggaatatcct 52606639  T
Q  811 taaaaagaagaggaagggtattgatggctgggccccacactaagaatgtttcagctctattgaggacagaaagt---agaaatgcactatttgagcgaaa 907  Q
    |||||||| || |||| ||| |||||| ||||| |||||||||||||||||| ||||||||||||| |||||||   || ||||||||||||||| ||||    
T  52606640 taaaaagaggaagaagagtactgatggttgggctccacactaagaatgtttctgctctattgaggatagaaagtctaaggaatgcactatttgag-gaaa 52606738  T
Q  908 ttacataaaagtccacaaacaccaaatg--tttcaacgtgat-ataaagcatattagaattagaatataaagt-atg-aaataattttttatggtcatct 1002  Q
    ||||||||||| ||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |    
T  52606739 ttacataaaagcccacaaaca-caaatgcttttcaacgtgataataaagcatattagaattagaatataaagtaatgaaaataaatttttatggtcatgt 52606837  T
Q  1003 tctatcaaaat 1013  Q
    |||||||||||    
T  52606838 tctatcaaaat 52606848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 723 - 883
Target Start/End: Original strand, 27301007 - 27301168
Alignment:
Q  723 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaagaagag 822  Q
    |||||||||||||||||| ||  |||||||||||||| ||||| ||||| | ||||||| | |||||||| || |||| |||   | ||||||||  |||    
T  27301007 tgtttgttttgggtgaaagtacaaggaaagattgaagaaggatggaaagaagaaggattgagaatctttccattgtttggaaccactttaaaaaggggag 27301106  T
Q  823 gaagggtattgatggctgggccccaca-ctaagaatgtttcagctctattgaggacagaaag 883  Q
    ||||| |  |||| |||||  |||||| | || |||||||| ||||||||| |||| |||||    
T  27301107 gaaggatgctgatagctggatcccacagcaaaaaatgtttccgctctattgtggacggaaag 27301168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 722 - 849
Target Start/End: Complemental strand, 40413702 - 40413574
Alignment:
Q  722 ctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaa-gaag 820  Q
    |||||||||||  | |||| ||  |||||||||||||  | |||||||||||  |||| ||||| ||||||  | |||| ||||| ||||||||| |  |    
T  40413702 ctgtttgttttaagggaaagtagaaggaaagattgaataaagatagaaagtaataggaataacattctttcctttgtttggaataaccttaaaaaggggg 40413603  T
Q  821 aggaagggtattgatggctgggccccaca 849  Q
    |||||||||| ||||||||||| ||||||    
T  40413602 aggaagggtaatgatggctgggtcccaca 40413574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 723 - 781
Target Start/End: Complemental strand, 29696037 - 29695979
Alignment:
Q  723 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggatt 781  Q
    ||||||||||| |||||| | | |||||||||||||| | ||||||||||| |||||||    
T  29696037 tgtttgttttgagtgaaagtgtaaggaaagattgaagaatgatagaaagtagaaggatt 29695979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 712 - 883
Target Start/End: Original strand, 386217 - 386389
Alignment:
Q  712 cattaaggttctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatcctt 811  Q
    |||||||| |||||||||||||||||| || || |||||||||||| | |||| | |||||| ||||| ||||||||||||  |  ||| ||||   |||    
T  386217 cattaagggtctgtttgttttgggtgacaacataaggaaagattgatgaaggacaaaaagtagaaggaataacaatctttcctttatttggaatcagctt 386316  T
Q  812 aaaaaga-agaggaagggtattgatggctgggccccacactaagaatgtttcagctctattgaggacagaaag 883  Q
    ||||| | ||||||| |||| ||||||||||| |||||||  | |||||||  |||||||||| ||| |||||    
T  386317 aaaaacagagaggaatggtaatgatggctgggtcccacacataaaatgtttatgctctattgaagacggaaag 386389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 723 - 792
Target Start/End: Original strand, 50010691 - 50010760
Alignment:
Q  723 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttc 792  Q
    |||||||||||||||| |  || |||||||||||| | |||| |||||||| |||||||| |||||||||    
T  50010691 tgtttgttttgggtgacagcataaggaaagattgatgaaggagagaaagtagaaggattagcaatctttc 50010760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 723 - 883
Target Start/End: Complemental strand, 7293653 - 7293492
Alignment:
Q  723 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaaga-aga 821  Q
    |||||||||||||||| || || |||||||||||| | |||| |||||||| |||||||| |||||||||  | |||| ||||  ||||| |||||  ||    
T  7293653 tgtttgttttgggtgacaacataaggaaagattgatgaaggagagaaagtagaaggattagcaatctttccttagtttagaatcaccttagaaagaggga 7293554  T
Q  822 ggaagggtattgatggctgggccccacactaagaatgtttcagctctattgaggacagaaag 883  Q
    |||| | || |||||| |||| |||||||  | |||||||| |||||||||| ||| |||||    
T  7293553 ggaatgataatgatggttgggtcccacacataaaatgtttctgctctattgaagacggaaag 7293492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 723 - 791
Target Start/End: Original strand, 42034816 - 42034884
Alignment:
Q  723 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatcttt 791  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||||||| | |||||  ||||||||    
T  42034816 tgtttgttttgggtgaaagtagtaggaaagattgaagaaggatagaaagtagagggattgccaatcttt 42034884  T

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Target: scaffold0114 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 721 - 862
Target Start/End: Complemental strand, 38211 - 38069
Alignment:
Q  721 tctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaaga-a 819  Q
    ||||||| |||||||||||| || ||||||||||||||| |||||||||||||  | |||||  | ||||||  | |||| |||   ||||| |||||      
T  38211 tctgtttattttgggtgaaagtagtaggaaagattgaagaaggatagaaagtagtaagattattattctttcctttgtttggaactaccttagaaagagg 38112  T
Q  820 gaggaagggtattgatggctgggccccacactaagaatgtttc 862  Q
    |||||||||||  | |||||||||||||||| || ||||||||    
T  38111 gaggaagggtacagttggctgggccccacacaaaaaatgtttc 38069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 722 - 792
Target Start/End: Complemental strand, 8232720 - 8232650
Alignment:
Q  722 ctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttc 792  Q
    ||||||||||||||||||| ||  |||||||||||| | |||||||||||||  |||||||||| ||||||    
T  8232720 ctgtttgttttgggtgaaagtagaaggaaagattgaggaaggatagaaagtagtaggattaacattctttc 8232650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 722 - 849
Target Start/End: Original strand, 36250225 - 36250353
Alignment:
Q  722 ctgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaa-gaag 820  Q
    ||||||||||| || |||| ||  |||||||||||||  | |||||||||||  |||| ||||| ||||||  | |||| ||||| ||||||||| |  |    
T  36250225 ctgtttgttttaggggaaagtagaaggaaagattgaataaagatagaaagtaataggaataacattctttcctttgtttggaataaccttaaaaaggggg 36250324  T
Q  821 aggaagggtattgatggctgggccccaca 849  Q
    |||||||||| ||||||||||| ||||||    
T  36250325 aggaagggtaatgatggctgggtcccaca 36250353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 723 - 837
Target Start/End: Complemental strand, 43988675 - 43988561
Alignment:
Q  723 tgtttgttttgggtgaaaatattaggaaagattgaaggaggatagaaagtataaggattaacaatctttctatcgtttcgaatatccttaaaaagaagag 822  Q
    |||||||||||||||| | |   ||||||||||||   ||||||||||||| |||||| | ||||||||| || |||| ||| | ||||||||||  |||    
T  43988675 tgtttgttttgggtgatagttgaaggaaagattgagtaaggatagaaagtagaaggatgagcaatctttccatagtttggaacaaccttaaaaaggtgag 43988576  T
Q  823 gaagggtattgatgg 837  Q
    ||||| || ||||||    
T  43988575 gaaggatactgatgg 43988561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 837
Target Start/End: Original strand, 22977425 - 22977490
Alignment:
Q  772 tataaggattaacaatctttctatcgtttcgaatatccttaaaaagaagaggaagggtattgatgg 837  Q
    ||||||||||||||||||||| || |||| ||| || |||||||||   |||||||||| ||||||    
T  22977425 tataaggattaacaatctttccattgtttggaaaattcttaaaaagggaaggaagggtactgatgg 22977490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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