View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5657_high_2 (Length: 334)
Name: NF5657_high_2
Description: NF5657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5657_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 33388218 - 33387917
Alignment:
| Q |
14 |
aaataccgtatgatcttttttccattcctagaagggacgacaaaacatgtaaataaaagnnnnnnnctttcttttaggcagatgtaactcacttcatttc |
113 |
Q |
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| T |
33388218 |
aaataccgtatgattttttttccattcctagaaggaacggcaaaacatgtaaataaaagtttctt--tttcttttaggc-gatgtaactcacttcatttc |
33388122 |
T |
|
| Q |
114 |
atcaatgataataaaatcaatacaatttagatgatgatnnnnnnnnngtatttgaatttgaccgtgatacatactttctagtaagcacaatcaacatcgc |
213 |
Q |
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| T |
33388121 |
atcaatgataataaaatcagtacaatttagatgatgataaaaaaaaagtatttgaatttgaccgtgatacatactttatagtaagcgcaatcaacatcgc |
33388022 |
T |
|
| Q |
214 |
atttaagctagttgttgagcattgagatggcgttggagggtcccgaagggcattgttgcaccacatgtcgtaacaaacagtatccaaagtgagtctacaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33388021 |
atttaagctagttgttgagcattgagatggcgttggagggtccccaagggcattgttgcaccacatgtcgtaacaaacagtatccaaagtgagtttacaa |
33387922 |
T |
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| Q |
314 |
gtatt |
318 |
Q |
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||||| |
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| T |
33387921 |
gtatt |
33387917 |
T |
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