View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5657_high_5 (Length: 238)
Name: NF5657_high_5
Description: NF5657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5657_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 30922667 - 30922878
Alignment:
| Q |
14 |
ataattcttcacaactaatgatcccttgactaaattcttaccagctttgactttctccaaagcttcaagcaaagccctcttgtgcctatctcccagccac |
113 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30922667 |
ataattctacacaactaataatcccttgactaaaatcttaccagctttgactttctccaaagcttcaagcaaagccttcttgtgcctatctcccagccac |
30922766 |
T |
|
| Q |
114 |
tgaaaaaatacaaaacactcataaatcattcagccatgaactatgattttcaaaaactt--caaccaaatcaacccctcagcttcaaaaatttccaaaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
30922767 |
tgaaaaaatacaaaacactcataaatcattcagccatgaacaatgattttcaaaaacttaaaaaccaaatcaacccctcaacttcaaaaacttccaaaat |
30922866 |
T |
|
| Q |
212 |
ttcatttattat |
223 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30922867 |
ttcatttattat |
30922878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University