View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5657_low_1 (Length: 355)
Name: NF5657_low_1
Description: NF5657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5657_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 63 - 344
Target Start/End: Complemental strand, 30922602 - 30922304
Alignment:
| Q |
63 |
acacgtgttagtcttggccaccagcacatgtagttacattcaatttattgcatttttctaattattatca---------cgtgtcagtgtgagtgttgtg |
153 |
Q |
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| T |
30922602 |
acacgtgttagtgttggccaccagcacatgtagttacattcaatttattgcatttttctaattattatcattgtcgatacgtgtcagtgtgagtgttgtg |
30922503 |
T |
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| Q |
154 |
tccagtgtcattgctcataattcaaagcagtttgacactttgac--------tcatgttgagttaattttcttgttatgacattgttttcttttcagata |
245 |
Q |
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| T |
30922502 |
tccagtgtcggtgctcataattcaaagcagtttgacactttgacactttgactcatgttgagttaatttttttgttatgtcattgttttcttttcagatt |
30922403 |
T |
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| Q |
246 |
catgtggaatactaatgatgacgataattataattatttctctgatgtttctttaatcaatgttaaatttgtttttatttttgttgcagaattgatgat |
344 |
Q |
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| T |
30922402 |
catgtggaatactaatgatgacgataattataattatttctctgatgtttctttaatcaatgttaaatttgtttttatttttgttgcagaattgatgat |
30922304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 30922685 - 30922604
Alignment:
| Q |
3 |
attagttgtgaagaattatgtaaaaccaacactttagattaaagacgagttcggtgtctaacacgtgttagtcttggccacc |
84 |
Q |
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| T |
30922685 |
attagttgtgtagaattatgtaataccaacactttagattaaagacgagtttggtgtctaacgcgtgttagtgttggccacc |
30922604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 42083189 - 42083149
Alignment:
| Q |
91 |
tgtagttacattcaatttattgcatttttctaattattatc |
131 |
Q |
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| T |
42083189 |
tgtagttacattcaatttcttccatttttcaaattattatc |
42083149 |
T |
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