View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5658-Insertion-1 (Length: 116)

Name: NF5658-Insertion-1
Description: NF5658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5658-Insertion-1
NF5658-Insertion-1
[»] chr4 (2 HSPs)
chr4 (8-116)||(4232057-4232165)
chr4 (11-72)||(19964623-19964684)
[»] chr1 (10 HSPs)
chr1 (8-116)||(3301320-3301429)
chr1 (8-116)||(43046037-43046146)
chr1 (8-95)||(43066283-43066370)
chr1 (8-106)||(43084465-43084564)
chr1 (29-95)||(43076411-43076477)
chr1 (8-95)||(38137468-38137555)
chr1 (18-104)||(45993090-45993177)
chr1 (11-104)||(45983310-45983404)
chr1 (8-85)||(40034318-40034395)
chr1 (8-85)||(51292205-51292282)
[»] chr6 (2 HSPs)
chr6 (8-94)||(7519328-7519414)
chr6 (8-94)||(7528699-7528785)
[»] chr5 (1 HSPs)
chr5 (8-85)||(16352218-16352295)
[»] chr2 (3 HSPs)
chr2 (12-83)||(34691419-34691490)
chr2 (12-83)||(34713831-34713902)
chr2 (30-83)||(33861451-33861504)
[»] chr8 (2 HSPs)
chr8 (8-58)||(4620280-4620330)
chr8 (8-104)||(4298063-4298160)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 3e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 4232057 - 4232165
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccattgtccttaaaagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4232057 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccattgtccttaaaagt 4232156  T
Q  108 ttaaaacca 116  Q
    |||||||||    
T  4232157 ttaaaacca 4232165  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 19964684 - 19964623
Alignment:
Q  11 gatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaa 72  Q
    ||||||||||||||| || ||||||||||||||||| ||||| ||||| || ||||||||||    
T  19964684 gatcaagtgaccagtagtggttgacttcccagagtcaacatgaccaataaccacaatgttaa 19964623  T

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Target: chr1 (Bit Score: 82; Significance: 3e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 3301320 - 3301429
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttaccca-ttgtccttaaaag 106  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3301320 gtagatcaagtgaccggtggtggttgacttcccggagtcgacatgaccaatgacaacaatgttaatgtgaaccttttccttacccatttgtccttaaaag 3301419  T
Q  107 tttaaaacca 116  Q
     |||||||||    
T  3301420 cttaaaacca 3301429  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 43046037 - 43046146
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt-gtccttaaaag 106  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| || ||||||||    
T  43046037 gtagatcaagtgaccagtggtggttgatttcccagagtcgacatggccaatgaccacaatgttgatgtgaaccttttctttacccattagttcttaaaag 43046136  T
Q  107 tttaaaacca 116  Q
     | |||||||    
T  43046137 ctgaaaacca 43046146  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 43066370 - 43066283
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt 95  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  43066370 gtagattaagtgaccagtggtggttgacttgccagagtcgacatggccaatgacaacgatgttgatgtgaaccttttccttacccatt 43066283  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 43084465 - 43084564
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt-gtccttaaaag 106  Q
    |||||||||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||    
T  43084465 gtagatcaagtgaccagttgtggttgatttcccagagtcaacatggccaatgaccacaatgttgatgtgaaccttttccttacccattagtccttaaaag 43084564  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 43076477 - 43076411
Alignment:
Q  29 agttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt 95  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  43076477 agttgacttccgagagtcgacatcgccaatgacaacaatgttaatctgagccttttccttacccatt 43076411  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 38137555 - 38137468
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt 95  Q
    ||||||||| |||||||  |||||||||||||||||||| ||||| ||||| || |||| |||||| ||||| || |||||| |||||    
T  38137555 gtagatcaaatgaccagcagtagttgacttcccagagtcaacatgaccaataaccacaacgttaatatgaactttatccttaaccatt 38137468  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 45993177 - 45993090
Alignment:
Q  18 tgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt-gtccttaaa 104  Q
    |||||||| || ||||||||||| ||||||||||| ||||| || |||||| ||||  |||||||||||||| ||||| |||||||||    
T  45993177 tgaccagtagtggttgacttcccggagtcgacatgaccaataaccacaatgctaataggaaccttttccttatccattagtccttaaa 45993090  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 45983404 - 45983310
Alignment:
Q  11 gatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt-gtccttaaa 104  Q
    |||||| |||||||| || ||||||||||| ||||| ||||| ||||| || |||||||||||  ||||||||| |||| ||||| |||||||||    
T  45983404 gatcaaatgaccagtagtggttgacttcccggagtccacatgaccaataaccacaatgttaatacgaacctttttcttagccattagtccttaaa 45983310  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 40034395 - 40034318
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttc 85  Q
    ||||||||| ||||||   || ||||||||||||||||||||||  ||||| |  || |||||||| |||||||||||    
T  40034395 gtagatcaaatgaccaccagtggttgacttcccagagtcgacattaccaataaatacgatgttaatatgaaccttttc 40034318  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 51292205 - 51292282
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttc 85  Q
    ||||||||| |||||||  ||| ||||||| ||| |||||||||| ||||| |  |||||||||||  ||||||||||    
T  51292205 gtagatcaaatgaccagcagtatttgactttccatagtcgacatgaccaataaacacaatgttaatacgaaccttttc 51292282  T

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Target: chr6 (Bit Score: 47; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 7519414 - 7519328
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccat 94  Q
    |||||||||||||||||| || ||||| || |||||||||||||| ||||||||||||||||| || |||| |||||| || |||||    
T  7519414 gtagatcaagtgaccagttgttgttgattttccagagtcgacatgtccaatgacaacaatgttgatatgaatcttttcttttcccat 7519328  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 7528785 - 7528699
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccat 94  Q
    |||||||||||||||||| || ||||| || |||||||||||||| |||||||| |||||||| || |||| |||||| || |||||    
T  7528785 gtagatcaagtgaccagttgttgttgattttccagagtcgacatgtccaatgacgacaatgttgatatgaatcttttcttttcccat 7528699  T

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Target: chr5 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 16352218 - 16352295
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttc 85  Q
    ||||| ||| ||||| | ||| |||||||||||||||| |||||| ||||| || ||||||||||| |||||||||||    
T  16352218 gtagaacaaatgaccggcggtggttgacttcccagagttgacatgaccaataaccacaatgttaatatgaaccttttc 16352295  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 34691419 - 34691490
Alignment:
Q  12 atcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttt 83  Q
    ||||| |||||||  ||||||||||||||||||| |||||| ||||| |  |||||||| || |||||||||    
T  34691419 atcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaatgttgatatgaaccttt 34691490  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 34713831 - 34713902
Alignment:
Q  12 atcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttt 83  Q
    ||||| |||||||  ||||||||||||||||||| |||||| ||||| |  |||||||| || |||||||||    
T  34713831 atcaaatgaccagccgtagttgacttcccagagttgacatgaccaataaacacaatgttgatatgaaccttt 34713902  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 33861451 - 33861504
Alignment:
Q  30 gttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttt 83  Q
    ||||||||||||||||| ||||| ||||| || ||||||||||| |||| ||||    
T  33861451 gttgacttcccagagtcaacatgaccaataaccacaatgttaatatgaaacttt 33861504  T

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Target: chr8 (Bit Score: 31; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 4620280 - 4620330
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaat 58  Q
    ||||||||| |||||||  || ||||||||||||||||||||||| |||||    
T  4620280 gtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaat 4620330  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 4298063 - 4298160
Alignment:
Q  8 gtagatcaagtgaccagtggtagttgacttcccagagtcgacatggccaatgacaacaatgttaatgtgaaccttttccttacccatt-gtccttaaa 104  Q
    ||||| ||| ||| |||| || ||||||||||| |||| | |||||||||| || |||||||||||  || |||||| |||| ||||| |||||||||    
T  4298063 gtagagcaaatgagcagtagtggttgacttcccggagttggcatggccaataaccacaatgttaatacgagcctttttcttatccattagtccttaaa 4298160  T

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