View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5658-Insertion-2 (Length: 1117)

Name: NF5658-Insertion-2
Description: NF5658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5658-Insertion-2
NF5658-Insertion-2
[»] chr3 (26 HSPs)
chr3 (216-995)||(10359319-10360116)
chr3 (216-681)||(9994758-9995227)
chr3 (690-995)||(9981141-9981444)
chr3 (819-949)||(10130686-10130816)
chr3 (819-949)||(10372199-10372329)
chr3 (7-134)||(10216529-10216656)
chr3 (7-134)||(10226141-10226268)
chr3 (7-134)||(10105381-10105508)
chr3 (11-134)||(9995344-9995468)
chr3 (7-134)||(48388239-48388366)
chr3 (7-134)||(10220046-10220174)
chr3 (7-134)||(10359077-10359207)
chr3 (715-820)||(10035698-10035804)
chr3 (217-279)||(48388469-48388531)
chr3 (901-1064)||(10264592-10264751)
chr3 (132-188)||(9995257-9995313)
chr3 (141-188)||(10359244-10359291)
chr3 (628-681)||(10035899-10035952)
chr3 (750-830)||(11778244-11778327)
chr3 (968-1002)||(10134711-10134745)
chr3 (977-1007)||(10093185-10093215)
chr3 (977-1007)||(10200067-10200097)
chr3 (969-1011)||(11772710-11772752)
chr3 (969-1002)||(10130846-10130879)
chr3 (969-1002)||(10372136-10372169)
chr3 (966-995)||(10584614-10584643)
[»] scaffold0083 (1 HSPs)
scaffold0083 (690-995)||(53693-53996)
[»] chr5 (3 HSPs)
chr5 (7-134)||(26796000-26796127)
chr5 (7-134)||(26799517-26799645)
chr5 (7-134)||(26807066-26807194)
[»] chr4 (1 HSPs)
chr4 (473-549)||(17848570-17848646)
[»] chr6 (1 HSPs)
chr6 (364-439)||(29192179-29192254)
[»] chr8 (1 HSPs)
chr8 (842-875)||(11488900-11488933)


Alignment Details
Target: chr3 (Bit Score: 640; Significance: 0; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 216 - 995
Target Start/End: Original strand, 10359319 - 10360116
Alignment:
Q  216 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttggttacacaaacgttacaaagtcttcatattccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10359319 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttggttacacaaatgttacaaagtcttcatattccc 10359418  T
Q  316 tttgttgaaatagcagtggtttacaattgaattttcaaacttttaaataattgatcattctagtttcattcttttgatatataattactagtatctgtta 415  Q
    |||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359419 tttgttgaaatagcagtggtttacaattgaatttcccaacttttaaacaattgatcattctagtttcattcttttgatatataattactagtatctgtta 10359518  T
Q  416 ataaggccacctagattgtatgctttaagcgcgatttagtcggagatatttctcatctttcatacaaattctgagctattaataaaaatgttcacaataa 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10359519 ataaggccacctagattgtatgctttaagcgcgatttagtcggagatatttctcatctttcatacaaattctgagctactaataaaaatgttcacaataa 10359618  T
Q  516 tataatacagtagattaagctaatgaagaaaaggattacacacttaccattaccaagaggagaagcagaggttgtaagaattttggaggcattgtttacg 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  10359619 tataatacagtagattaagctaatgaagaaaaggattacacacttaccattaccaagaggggaagcagaggttgtaagaatttcggaggcattgtttacg 10359718  T
Q  616 acaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata-agc-------------------taaaggttttg 695  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||                   |||||||||||    
T  10359719 acaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacttatacagcaaggaagttttttagcttgtaaaggttttg 10359818  T
Q  696 tcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatcttaagg 795  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  10359819 tcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcgaagagaaatgaaacg-aaaatggatcttaagg 10359917  T
Q  796 tctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaaca 895  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359918 tctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaaca 10360017  T
Q  896 aatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnnntgttacaaattaagaatattacaaacccta 995  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||           ||||||||||||||||||||||||||||||    
T  10360018 aatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgttgc-aaacaaaaaatgttacaaattaagaatattacaaacccta 10360116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 216 - 681
Target Start/End: Complemental strand, 9995227 - 9994758
Alignment:
Q  216 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttggttacacaaacgttacaaagtcttcatattccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9995227 attaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacatttgattacacaaacgttacaaagtcttcatattccc 9995128  T
Q  316 tttgttgaaatagcagtggtttacaattgaattttcaaacttttaaataattgatcattctagtttcattcttttgatatataattactagtatctgtta 415  Q
    |||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995127 tttgttgaaatagcagtggtttacaattgaatttcccaacttttaaacaattgatcattctagtttcattcttttgatatataattactagtatctgtta 9995028  T
Q  416 ataaggccacctagattgtatgctttaagcgcgatttagtcggagatatttctcatctttcatacaaattctgagctattaataaaaatgttcacaataa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995027 ataaggccacctagattgtatgctttaagcgcgatttagtcggagatatttctcatctttcatacaaattctgagctattaataaaaatgttcacaataa 9994928  T
Q  516 tat----aatacagtagattaagctaatgaagaaaaggattacacacttaccattaccaagaggagaagcagaggttgtaagaattttggaggcattgtt 611  Q
    |||    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  9994927 tatatacaatacagtaggttaagctaatgaagaaaaggattacacacttaccattaccaagaggggatgcagaggttgtaagaattttggaggcattgtt 9994828  T
Q  612 tacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9994827 tacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacttata 9994758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 690 - 995
Target Start/End: Complemental strand, 9981444 - 9981141
Alignment:
Q  690 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  9981444 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacgaaaa-tggatc 9981346  T
Q  790 ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 889  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981345 ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 9981246  T
Q  890 tcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnnntgttacaaattaagaatattacaa 989  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||           ||||||||||||||||||||||||    
T  9981245 tcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgc-aaacaaaaaatgttacaaattaagaatattacaa 9981147  T
Q  990 acccta 995  Q
    ||||||    
T  9981146 acccta 9981141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 819 - 949
Target Start/End: Complemental strand, 10130816 - 10130686
Alignment:
Q  819 attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag 918  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10130816 atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag 10130717  T
Q  919 cattcatttaaaattacaaattaagaatcac 949  Q
    |||||| ||||| ||||||||||||||||||    
T  10130716 cattcacttaaagttacaaattaagaatcac 10130686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 819 - 949
Target Start/End: Original strand, 10372199 - 10372329
Alignment:
Q  819 attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag 918  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10372199 atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag 10372298  T
Q  919 cattcatttaaaattacaaattaagaatcac 949  Q
    |||||| ||||| ||||||||||||||||||    
T  10372299 cattcacttaaagttacaaattaagaatcac 10372329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 10216656 - 10216529
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcg 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  10216656 aagagtattgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcg 10216557  T
Q  107 gaacaaatgaattatggttggtctgaag 134  Q
    ||||||||||||||||||||||||||||    
T  10216556 gaacaaatgaattatggttggtctgaag 10216529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 10226268 - 10226141
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcg 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  10226268 aagagtattgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcg 10226169  T
Q  107 gaacaaatgaattatggttggtctgaag 134  Q
    ||||||||||||||||||||||||||||    
T  10226168 gaacaaatgaattatggttggtctgaag 10226141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 10105508 - 10105381
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcg 106  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  10105508 aagagtattgttcatggtggtagatgaatgaaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcg 10105409  T
Q  107 gaacaaatgaattatggttggtctgaag 134  Q
    ||||||||||||||||||||||||||||    
T  10105408 gaacaaatgaattatggttggtctgaag 10105381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 9995468 - 9995344
Alignment:
Q  11 gtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattc-nnnnnnnnattcttttgtccatttcctcggaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  9995468 gtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattctttttttttattcttttgtccatttcctcggaa 9995369  T
Q  110 caaatgaattatggttggtctgaag 134  Q
    |||||||||||||||||||||||||    
T  9995368 caaatgaattatggttggtctgaag 9995344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 48388239 - 48388366
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcg 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||     
T  48388239 aagagtcttgttcatggtggtagatgagtggaaccagtcaccagttagatagagcaattctccatttattctttctttgattcttttgtccatttcctca 48388338  T
Q  107 gaacaaatgaattatggttggtctgaag 134  Q
    |||| ||||||| |||||||||||||||    
T  48388339 gaaccaatgaataatggttggtctgaag 48388366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 10220174 - 10220046
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctc 105  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||         ||||||||||||||||||||    
T  10220174 aagagtattgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctc 10220075  T
Q  106 ggaacaaatgaattatggttggtctgaag 134  Q
    |||||||||||||||||||||||||||||    
T  10220074 ggaacaaatgaattatggttggtctgaag 10220046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 10359077 - 10359207
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattc--nnnnnnnnattcttttgtccatttcct 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          |||||||||||||||||||    
T  10359077 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatacagcaattctccatttattcttttttttttattcttttgtccatttcct 10359176  T
Q  105 cggaac-aaatgaattatggttggtctgaag 134  Q
    |||||| ||||||||||||||||||||||||    
T  10359177 cggaacaaaatgaattatggttggtctgaag 10359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 715 - 820
Target Start/End: Complemental strand, 10035804 - 10035698
Alignment:
Q  715 atattcattcagatcattctttcagatcaaatatatata--cactttcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaac 812  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  10035804 atattcattcagatcattctttcagatgaaatatatatatacactttctcgaagagaaatgaaacgaaaa-tggatcttaaggtctcaaccaggatcaac 10035706  T
Q  813 tatatgat 820  Q
    ||||||||    
T  10035705 tatatgat 10035698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 48388469 - 48388531
Alignment:
Q  217 ttaccaaaacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacat 279  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48388469 ttaccataacccatccccaagtatcagcaaaagatggtacatgagttgtgtatactatcacat 48388531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 901 - 1064
Target Start/End: Complemental strand, 10264751 - 10264592
Alignment:
Q  901 atggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnnntgttacaaattaagaatattacaaaccctactgca 1000  Q
    |||||||||||||| ||||||||  ||||| |||||||||||||||||||||              |||||||||||||||||||||||| |||||| ||    
T  10264751 atggttttatcatatgagcattcgcttaaagttacaaattaagaatcacgtc---cgaaaaaaaaagttacaaattaagaatattacaaatcctactaca 10264655  T
Q  1001 ttgtactttgttctgaccggatcatgc-ggatattaggaaacatttcaaatgataataaaataca 1064  Q
    |||||||||| ||||| |||||||||| || ||||| |||||| |||||||||||||||||||||    
T  10264654 ttgtactttg-tctgatcggatcatgcaggttattacgaaaca-ttcaaatgataataaaataca 10264592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 9995313 - 9995257
Alignment:
Q  132 aagtacttgttgtaaaaaatagttgatgacaactgagttatactacaacacaaacaa 188  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9995313 aagtacttgttgtaaaaaatagttgatgacaagtgagttatactacaacacaaacaa 9995257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 10359244 - 10359291
Alignment:
Q  141 ttgtaaaaaatagttgatgacaactgagttatactacaacacaaacaa 188  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  10359244 ttgtaaaaaatagttgatgataactgagttatactacaacacaaacaa 10359291  T

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Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 628 - 681
Target Start/End: Complemental strand, 10035952 - 10035899
Alignment:
Q  628 atctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata 681  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||    
T  10035952 atctcagtagacaagttttggccttagcagtgaaacttaaaaagatgacttata 10035899  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 750 - 830
Target Start/End: Original strand, 11778244 - 11778327
Alignment:
Q  750 tatacactttcttgaagagaaatgaaacgaa---aaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaa 830  Q
    ||||||||||||||||| ||||||||| |||   || ||||||||||||||  |  |||| |||||||||||||||||||||||    
T  11778244 tatacactttcttgaagcgaaatgaaatgaattaaactggatcttaaggtcagagccaggttcaactatatgattttgaagaaa 11778327  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 968 - 1002
Target Start/End: Complemental strand, 10134745 - 10134711
Alignment:
Q  968 ttacaaattaagaatattacaaaccctactgcatt 1002  Q
    |||||||||||||||||||||||||||||||||||    
T  10134745 ttacaaattaagaatattacaaaccctactgcatt 10134711  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 977 - 1007
Target Start/End: Complemental strand, 10093215 - 10093185
Alignment:
Q  977 aagaatattacaaaccctactgcattgtact 1007  Q
    |||||||||||||||||||||||||||||||    
T  10093215 aagaatattacaaaccctactgcattgtact 10093185  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 977 - 1007
Target Start/End: Complemental strand, 10200097 - 10200067
Alignment:
Q  977 aagaatattacaaaccctactgcattgtact 1007  Q
    |||||||||||||||||||||||||||||||    
T  10200097 aagaatattacaaaccctactgcattgtact 10200067  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 969 - 1011
Target Start/End: Complemental strand, 11772752 - 11772710
Alignment:
Q  969 tacaaattaagaatattacaaaccctactgcattgtactttgt 1011  Q
    |||||||||||||||||||||| |||| |||||| ||||||||    
T  11772752 tacaaattaagaatattacaaatcctaatgcattctactttgt 11772710  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 969 - 1002
Target Start/End: Complemental strand, 10130879 - 10130846
Alignment:
Q  969 tacaaattaagaatattacaaaccctactgcatt 1002  Q
    |||||||||||||||||||||||||||| |||||    
T  10130879 tacaaattaagaatattacaaaccctaccgcatt 10130846  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 969 - 1002
Target Start/End: Original strand, 10372136 - 10372169
Alignment:
Q  969 tacaaattaagaatattacaaaccctactgcatt 1002  Q
    |||||||||||||||||||||||||||| |||||    
T  10372136 tacaaattaagaatattacaaaccctaccgcatt 10372169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 966 - 995
Target Start/End: Complemental strand, 10584643 - 10584614
Alignment:
Q  966 tgttacaaattaagaatattacaaacccta 995  Q
    ||||||||||||||||||||||||||||||    
T  10584643 tgttacaaattaagaatattacaaacccta 10584614  T

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Target: scaffold0083 (Bit Score: 240; Significance: 1e-132; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 690 - 995
Target Start/End: Original strand, 53693 - 53996
Alignment:
Q  690 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  53693 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacgaaaa-tggatc 53791  T
Q  790 ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 889  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53792 ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 53891  T
Q  890 tcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnnnntgttacaaattaagaatattacaa 989  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||           ||||||||||||||||||||||||    
T  53892 tcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgc-aaacaaaaaatgttacaaattaagaatattacaa 53990  T
Q  990 acccta 995  Q
    ||||||    
T  53991 acccta 53996  T

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Target: chr5 (Bit Score: 96; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 26796127 - 26796000
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttattcnnnnnnnnattcttttgtccatttcctcg 106  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  26796127 aagagtattgttcatggtggtagatgaatgaaaccagtcaccagttagatagagcaattctccatttattcttttttttattcttttgtccatttcctcg 26796028  T
Q  107 gaacaaatgaattatggttggtctgaag 134  Q
    ||||||||||||||||||||||||||||    
T  26796027 gaacaaatgaattatggttggtctgaag 26796000  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 26799645 - 26799517
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctc 105  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||         ||||||||||||||||||||    
T  26799645 aagagtattgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctc 26799546  T
Q  106 ggaacaaatgaattatggttggtctgaag 134  Q
    |||||||||||||||||||||||||||||    
T  26799545 ggaacaaatgaattatggttggtctgaag 26799517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 26807194 - 26807066
Alignment:
Q  7 aagagtcttgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctcca-tttattcnnnnnnnnattcttttgtccatttcctc 105  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||         ||||||||||||||||||||    
T  26807194 aagagtattgttcatggtggtagatgaatggaaccagtcaccagttagatagagcaattctccatttttttattttttttattcttttgtccatttcctc 26807095  T
Q  106 ggaacaaatgaattatggttggtctgaag 134  Q
    |||||||||||||||||||||||||||||    
T  26807094 ggaacaaatgaattatggttggtctgaag 26807066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 473 - 549
Target Start/End: Original strand, 17848570 - 17848646
Alignment:
Q  473 tttcatacaaattctgagctattaataaaaatgttcacaataatataatacagtagattaagctaatgaagaaaagg 549  Q
    ||||||||||||||||||| |||  | |||||||| |||| |||||||||| ||| ||||||||||||||| |||||    
T  17848570 tttcatacaaattctgagccattggtcaaaatgtttacaacaatataatactgtaaattaagctaatgaagcaaagg 17848646  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 364 - 439
Target Start/End: Original strand, 29192179 - 29192254
Alignment:
Q  364 aattgatcattctagtttcattcttttgatatataattactagtatctgttaataaggccacctagattgtatgct 439  Q
    |||||||||||||||||| ||| | |||||||||  ||||||||||||||||| |||| | |||||| ||| ||||    
T  29192179 aattgatcattctagttttattatgttgatatatctttactagtatctgttaacaaggacgcctagactgtgtgct 29192254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 842 - 875
Target Start/End: Complemental strand, 11488933 - 11488900
Alignment:
Q  842 attcaacaaatgtatataggaatatgaatattta 875  Q
    |||||||||||||||||||||||| |||||||||    
T  11488933 attcaacaaatgtatataggaataagaatattta 11488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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