View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5658-Insertion-5 (Length: 372)
Name: NF5658-Insertion-5
Description: NF5658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5658-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 47075953 - 47076314
Alignment:
| Q |
8 |
ctcagctcattgtatgtaaaccttctcaaagccaaatctgcattctgccctccaaagttaacagtttctgttagccttttatactttaatacccgaattt |
107 |
Q |
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| T |
47075953 |
ctcagctcattgtatgtaaaccttctcaaagccaaatctgcattctgccctccaaagttaacagtttctgttagccttttatactttaatacccgaattt |
47076052 |
T |
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| Q |
108 |
tgtacatgtaatggatggatataacgatcgttgaacacgacatgatgccaaacaaggaggtaacaacaataatacgcactattgctttgttacttgtagt |
207 |
Q |
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| T |
47076053 |
tgtacatgtaatggatggatataacgatcgttgaacacgacatgatgctaaacaaggaggtaacaacaataatatgcactattgctttgttacttgtagt |
47076152 |
T |
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| Q |
208 |
cttgattggataagcaaaaggtctttcatatccctttgagctttggatgctgttgtttccaacctttaagaaagcagtggtaaaatcgtcagcttcatgt |
307 |
Q |
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| T |
47076153 |
cttgattggataagcaaaaggtctttcatacccctttgagctttggatgctgttgtttccaacctttaagaaagcagtggtaaaatcgtcagcttcatgt |
47076252 |
T |
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| Q |
308 |
gttcgtttgacatatctcaaaggaagtccttgtttcttgcatcttccttcttcataaattgc |
369 |
Q |
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| T |
47076253 |
gttcgtttgacatatctcaaaggaagtccttgtttcttgcatcttccttcttcataaattgc |
47076314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 47068089 - 47068019
Alignment:
| Q |
293 |
tcgtcagcttcatgtgttcgtttgacatatctcaaaggaagtccttgtttcttgcatcttccttcttcata |
363 |
Q |
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| T |
47068089 |
tcgtcggcttcatgtgtccttgtgacatatctcaaaggcaacccttgtttcttgcatctttcttcctcata |
47068019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 47068311 - 47068259
Alignment:
| Q |
77 |
gttagccttttatactttaatacccgaattttgtacatgtaatggatggatat |
129 |
Q |
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| T |
47068311 |
gttagccttttgtaccttaatacccgaatcttgtaaacgtaatggatggatat |
47068259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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