View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5658_high_2 (Length: 252)
Name: NF5658_high_2
Description: NF5658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5658_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3603788 - 3603559
Alignment:
| Q |
1 |
catagtagaagtttatcaatccgaattctaatatcgaggttttgcctaataatgtataattgtagaacaaggaacatgggattttacagccaggataagt |
100 |
Q |
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| T |
3603788 |
catagtagaagtttatcaatccgaattctaatatcgaggttttgcctaatgatgtataattgtagaacaaggaacgtggaattttacagccaggaaaagt |
3603689 |
T |
|
| Q |
101 |
gtctaactagcatctactacgttgaccctcaaaaaagcatctaataatatggtccaaatatggcaacaaaagcataaaggtaaagactcaatgtaatgga |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603688 |
gtctaactagcatctactacgttgaccctca-aaaagcatctaataatatggtccaaatatggcaacaaaagcataaaggtaaagactcaatgtaatgga |
3603590 |
T |
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| Q |
201 |
atatccggtaaatgccagaacttatgttaac |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3603589 |
atatccggtaaatgccagaacttatgttaac |
3603559 |
T |
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