View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5658_low_1 (Length: 493)
Name: NF5658_low_1
Description: NF5658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5658_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Original strand, 45550350 - 45550763
Alignment:
| Q |
19 |
agtaataggcagacttttggttttggaggaccaaatttttatctggaccaccaaacatcatggttttgaaggatccaacagccactttttggtttttgat |
118 |
Q |
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| T |
45550350 |
agtaataggcagacttttggttttggaggaccaaatttttatctggaccaccaaacatcatggttttgaaggatccaacagccactttttggtttttgat |
45550449 |
T |
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| Q |
119 |
caaattgtctgtttgtttgctcttcagtgtggtgctgctgcttcctttggcagagtgtttggatgatgcagtattacaattaccagaaaccttcttctca |
218 |
Q |
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| T |
45550450 |
caaattgtctgtttgtttgctcttcagtgtggtgctgctgcttcctttggcagagtgtttggatgatgcagtattacaattaccagaaaccttcttctca |
45550549 |
T |
|
| Q |
219 |
ggaaggttgtccagtcccattagtttggctattacgtttggaatccttcccttgtcggccatctggtttgaaatgtcggcagctctgccagtgttagttg |
318 |
Q |
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| T |
45550550 |
ggaaggttgtccagtcccattagtttggctattacgtttggaatccttcccttgtcggccatctggtttgaaatgtcggcagctctgccagtgttagttg |
45550649 |
T |
|
| Q |
319 |
atgttcgcttccgctgagaatcttttatctttctggtttccttagagttagtgattgtaattgctctctgcatcttgttgtcaaccgagaaagttggacg |
418 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45550650 |
atgttcgcttccgctgagaatcttttatctttttggtttccttagagttggtgattgtaattgctctctgcatcttgttgtcaaccgagaaagttggacg |
45550749 |
T |
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| Q |
419 |
tgccagttgcattt |
432 |
Q |
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| T |
45550750 |
tgccagttgtattt |
45550763 |
T |
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