View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659-Insertion-11 (Length: 667)

Name: NF5659-Insertion-11
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659-Insertion-11
NF5659-Insertion-11
[»] chr6 (4 HSPs)
chr6 (225-665)||(32312577-32313019)
chr6 (8-229)||(32300344-32300566)
chr6 (463-614)||(5642567-5642717)
chr6 (539-611)||(6368742-6368814)
[»] chr3 (7 HSPs)
chr3 (444-611)||(48847594-48847762)
chr3 (462-617)||(621996-622151)
chr3 (452-544)||(16118491-16118583)
chr3 (264-379)||(31335737-31335852)
chr3 (301-388)||(21505636-21505724)
chr3 (444-606)||(45675677-45675838)
chr3 (480-553)||(19322388-19322461)
[»] scaffold0065 (1 HSPs)
scaffold0065 (447-616)||(49461-49630)
[»] chr7 (4 HSPs)
chr7 (442-618)||(10201339-10201516)
chr7 (493-616)||(27933478-27933601)
chr7 (465-611)||(3946914-3947067)
chr7 (444-521)||(36424246-36424320)
[»] chr1 (9 HSPs)
chr1 (444-610)||(43292713-43292879)
chr1 (452-617)||(9607556-9607722)
chr1 (478-608)||(35998117-35998247)
chr1 (539-610)||(16473494-16473565)
chr1 (326-388)||(50845523-50845585)
chr1 (486-611)||(47555688-47555815)
chr1 (452-565)||(5502785-5502898)
chr1 (342-389)||(24563767-24563815)
chr1 (478-611)||(31133533-31133666)
[»] chr8 (5 HSPs)
chr8 (463-608)||(41146144-41146289)
chr8 (462-612)||(11246940-11247090)
chr8 (461-554)||(39396858-39396951)
chr8 (519-613)||(29471756-29471850)
chr8 (301-388)||(3318201-3318288)
[»] chr4 (4 HSPs)
chr4 (461-608)||(41921946-41922093)
chr4 (463-545)||(47331584-47331666)
chr4 (301-362)||(43055805-43055866)
chr4 (326-386)||(54372409-54372469)
[»] scaffold0095 (1 HSPs)
scaffold0095 (461-554)||(37850-37943)
[»] chr5 (7 HSPs)
chr5 (444-609)||(15150774-15150939)
chr5 (452-591)||(12429731-12429871)
chr5 (456-611)||(37018811-37018960)
chr5 (461-610)||(37060269-37060418)
chr5 (326-388)||(38268440-38268502)
chr5 (463-616)||(38153333-38153486)
chr5 (443-518)||(15156589-15156664)
[»] chr2 (5 HSPs)
chr2 (301-388)||(38433231-38433318)
chr2 (314-384)||(7863506-7863576)
chr2 (301-388)||(43832664-43832752)
chr2 (496-553)||(6807123-6807180)
chr2 (445-518)||(36639087-36639160)


Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 225 - 665
Target Start/End: Original strand, 32312577 - 32313019
Alignment:
Q  225 agaccaactaccagctagcatggtaaaagattcagactcat--cattttcattcaattgataataacaaaaagaaaaatttattctagttagaattattt 322  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312577 agaccaactaccagctagcatggtaaaagattcagactcatatcattttcattcaattgataataacaaaaagaaaaatttattctagttagaattattt 32312676  T
Q  323 ttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaacagattctgtcattctttcctacaggctacatctac 422  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312677 ttctgtttattcaattccaccgagttttgggaattctttcttgtaccaaaagaaaggttcctaacagattctgtcattctttcctacaggctacatctac 32312776  T
Q  423 ttgcctaatagtattacagttagtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctag 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312777 ttgcctaatagtattacagttagtgtctatttggtacggcgtttgcaaaacggactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctag 32312876  T
Q  523 tatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaattgtt 622  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32312877 tatctggagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaattgtt 32312976  T
Q  623 ttaatttataactgctttaccagatatgtaactgtttacattg 665  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32312977 ttaatttataactgctttaccagatatgtaactgtttacattg 32313019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 32300344 - 32300566
Alignment:
Q  8 aatatatatagtgaaagatttagtatgtacggatgcacaattggaatgcttttctcgcgtccctatgcaata-aaacgcgaatttgcagaagcaacaaat 106  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32300344 aatatatatagtgaaagatttagtatgttcggatgcacgattggaatgcttttctcgcgtccctatgcaatacaaacgcgaatttgcagaagcaacaaat 32300443  T
Q  107 agtagagttagtcaaacgtgcgatggaaacgtggtttcttagatttccaaacagacacgatgtagaagacacgaaaccattagacgaaacaagtatggtn 206  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32300444 agtagagttagtcaaacgtgcggtggaaacgtggtttcttagatttccaaacagacacgatgtagaagacacgaaaccattagacgaaacaagtatggta 32300543  T
Q  207 nnnnnntttaagcagcttagacc 229  Q
          |||||||||||||||||    
T  32300544 aaaaaatttaagcagcttagacc 32300566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 614
Target Start/End: Original strand, 5642567 - 5642717
Alignment:
Q  463 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgga 562  Q
    ||||| ||||| || ||| ||| |||||||| |||||| | | | ||||||||||| |||||| |||| ||| ||||||||| || ||||| | |||||     
T  5642567 gtttgtaaaacggagtttaatgaaaatcacgacaaaaatc-acgctagcgtagaagttagtatttgaaacttctggaaatcatggtaaaaatatattggg 5642665  T
Q  563 aagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgct 614  Q
    || ||||||||  || |||||| |||||| ||||||||| ||||||||||||    
T  5642666 aaacatgcaaatttggttttgtgtgttgcaaacgggaaatcaaacacacgct 5642717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 539 - 611
Target Start/End: Complemental strand, 6368814 - 6368742
Alignment:
Q  539 aaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 611  Q
    |||||||||||||||  ||| || |||| ||||||| ||||||| | |||||| |||| ||||||||||||||    
T  6368814 aaatcacggcaaaaatgcatcgggaagcgtgcaaacgtgcttttctgtgttgcaaacgtgaaaccaaacacac 6368742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 444 - 611
Target Start/End: Complemental strand, 48847762 - 48847594
Alignment:
Q  444 agtgtctatttggtacggcgtttgcaaaacagactttga-tggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaat 542  Q
    ||||||| |||||||| ||||||| |||||||| ||||| |||||||||||||||||||||| |||||||  |||| |||||| |||||||| || ||||    
T  48847762 agtgtctgtttggtacagcgtttgaaaaacagagtttgaatggaaatcacggcaaaaaaccacgttagcgaggaagttagtatttgaagcttgtgaaaat 48847663  T
Q  543 cacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 611  Q
    |||||||||||  ||| ||||| | |||||||||||||||||||||||| ||||| |||||||||||||    
T  48847662 cacggcaaaaatgcatcggaaaacgtgcaaacatgcttttgtatgttgcaaacggaaaaccaaacacac 48847594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 462 - 617
Target Start/End: Original strand, 621996 - 622151
Alignment:
Q  462 cgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgg 561  Q
    ||||||||||| ||| ||||||| ||||||| ||||||||||| |||| ||||||||||||||| || |||||||  |||||||||||||||| ||| |     
T  621996 cgtttgcaaaatagagtttgatgaaaatcacagcaaaaaaccacgttaacgtagaagctagtatttggagcttttaaaaatcacggcaaaaacgcatcga 622095  T
Q  562 aaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaa 617  Q
    | | ||||||||  |||||||||||||||| ||| ||||||||||| ||| |||||    
T  622096 ataacatgcaaatgtgcttttgtatgttgcaaacaggaaaccaaacccacacttaa 622151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 452 - 544
Target Start/End: Original strand, 16118491 - 16118583
Alignment:
Q  452 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatca 544  Q
    |||||||  |||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||    
T  16118491 tttggtatagcgtttgcaaaatagaatttgatggaaatcacgacaaaaaaccacgttagcgtagaagctagtatttggagcttttggaaatca 16118583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 31335737 - 31335852
Alignment:
Q  264 atcattttcattcaattgataataacaaaaagaaaaatttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttct 363  Q
    ||||||| |||||||||||||||| || |||||||  ||||||||| || ||||||||  |||| ||||||||||   ||||||||||| |||| |||||    
T  31335737 atcatttccattcaattgataataccagaaagaaagctttattctatttcgaattattcctctgcttattcaattttgcccagttttggcaattatttct 31335836  T
Q  364 tgtaccaaaagaaagg 379  Q
    | ||| ||||||||||    
T  31335837 tatacgaaaagaaagg 31335852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 21505724 - 21505636
Alignment:
Q  301 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattcttt-cttgtaccaaaagaaaggttcctaaca 388  Q
    |||||||||| |||||||||| | | ||||||||| |||  |||||||||||||||||||| | | |||||||||||||||||||||||    
T  21505724 tttattctagctagaattattctgcagtttattcatttctgcccagttttgggaattctttccatataccaaaagaaaggttcctaaca 21505636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 606
Target Start/End: Complemental strand, 45675838 - 45675677
Alignment:
Q  444 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatc 543  Q
    ||||||| |||||||  || |||| ||||| || |||||| |||||||||| ||||||||| ||||||||||||| |||||| ||||| || ||  ||||    
T  45675838 agtgtctgtttggtattgcttttgaaaaacggagtttgatagaaatcacggtaaaaaaccacgttagcgtagaagttagtatttgaagtttctgagaatc 45675739  T
Q  544 acggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaa 606  Q
    ||| ||||| || || | ||||  | ||||| || | |||| |||||| ||||||||||||||    
T  45675738 acgacaaaa-caaatcgaaaagtgtacaaacgtgttattgtgtgttgcaaacgggaaaccaaa 45675677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 480 - 553
Target Start/End: Complemental strand, 19322461 - 19322388
Alignment:
Q  480 tgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaa 553  Q
    |||||||||||| |||||||||||| ||||||| ||||| |||||| || || || ||||||||| ||||||||    
T  19322461 tgatggaaatcatggcaaaaaaccacgttagcgaagaagttagtatttggagtttatggaaatcatggcaaaaa 19322388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 447 - 616
Target Start/End: Complemental strand, 49630 - 49461
Alignment:
Q  447 gtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacg 546  Q
    |||||||| |||| ||||||||||||| || ||| ||| |||||||| ||||||||||||| |||||||||| |||||| |  ||||| | || |||| |    
T  49630 gtctatttagtacagcgtttgcaaaacggagtttaatgaaaatcacgacaaaaaaccatgtaagcgtagaagttagtatttagagcttctagagatcatg 49531  T
Q  547 gcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgctta 616  Q
    |||| ||| ||||| ||||| ||||||| ||||||||| | |||| ||||||||||||||||||| ||||    
T  49530 gcaacaacgcattgaaaagcgtgcaaacgtgcttttgtttattgcaaacgggaaaccaaacacacactta 49461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 442 - 618
Target Start/End: Original strand, 10201339 - 10201516
Alignment:
Q  442 ttagtgtctatttggtacggcgtttgcaaaacagacttt-gatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaa 540  Q
    ||||||| | |||||||  || |||||||||  |||||| | ||||||||||  ||||||| || |||||||||||||||||||| || |||||||||||    
T  10201339 ttagtgtttgtttggtattgcatttgcaaaatggacttttggtggaaatcacaacaaaaaatcacgttagcgtagaagctagtatttggagcttttggaa 10201438  T
Q  541 atcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaat 618  Q
    ||||| ||||||| ||||  |||||| ||||||| || |||||| |||||| ||||| |||||||||||||| |||||    
T  10201439 atcacagcaaaaatacatcagaaagcgtgcaaacgtgattttgtgtgttgcaaacggaaaaccaaacacacgattaat 10201516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 616
Target Start/End: Complemental strand, 27933601 - 27933478
Alignment:
Q  493 ggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgct 592  Q
    ||||||||| ||  ||||||||||||||||||| |  ||||| || ||||||||| ||||| | || ||||| | || |||| ||||||||| ||||||     
T  27933601 ggcaaaaaatcacattagcgtagaagctagtatttagagcttctgaaaatcacggtaaaaatatatcggaaaacgtgtaaacgtgcttttgtgtgttgca 27933502  T
Q  593 aacgggaaaccaaacacacgctta 616  Q
    ||||||||| || ||| |||||||    
T  27933501 aacgggaaatcacacatacgctta 27933478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 611
Target Start/End: Original strand, 3946914 - 3947067
Alignment:
Q  465 ttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttgga-------aatcacggcaaaaacaca 557  Q
    |||||||||  | |||||| |||||||||||||||||| |||| || ||||||||| |||| || ||||| || |       | ||||| ||||||||||    
T  3946914 ttgcaaaacgaagtttgatagaaatcacggcaaaaaactatgtcagggtagaagctggtatttggagcttctgtagatcacgattcacgacaaaaacaca 3947013  T
Q  558 ttggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 611  Q
    |  | || | |||||| |||||||||| |||||| |||  ||||||||||||||    
T  3947014 tcaggaaacgtgcaaatatgcttttgtttgttgcaaacacgaaaccaaacacac 3947067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 521
Target Start/End: Complemental strand, 36424320 - 36424246
Alignment:
Q  444 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcac-ggcaaaaaaccatgttagcgtagaagcta 521  Q
    ||||||| |||||||| || ||||||||||||| ||||||| ||||||| || ||||||    ||||||||||||||||    
T  36424320 agtgtctgtttggtactgcatttgcaaaacagagtttgatgaaaatcacagggaaaaaa----gttagcgtagaagcta 36424246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 610
Target Start/End: Original strand, 43292713 - 43292879
Alignment:
Q  444 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatc 543  Q
    ||||||||||| |  |||||||||  ||||||| ||||||||||||||||| |||||||||||||| |||| ||| |||||| || ||||| || |||||    
T  43292713 agtgtctatttagctcggcgtttgtcaaacagagtttgatggaaatcacggtaaaaaaccatgttaacgtaaaagttagtatttggagcttctgaaaatc 43292812  T
Q  544 acggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacaca 610  Q
    |||| ||||||| |   |||| ||||||||| ||||||||| || ||| ||| ||||||||||||||    
T  43292813 acggtaaaaacatacccgaaaacatgcaaacgtgcttttgtgtggtgcaaacaggaaaccaaacaca 43292879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 452 - 617
Target Start/End: Complemental strand, 9607722 - 9607556
Alignment:
Q  452 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaa-ccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaa 550  Q
    |||||||| ||||||||||||| |  ||||||| |||||||||||||||| ||| ||||||  ||||| |||||| |  ||||| |  |||| |||||||    
T  9607722 tttggtacagcgtttgcaaaacggtgtttgatgaaaatcacggcaaaaaaaccacgttagcaaagaagttagtatttagagcttctaaaaattacggcaa 9607623  T
Q  551 aaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgcttaa 617  Q
    |||||| |||  || ||||||||| ||||||||| ||| || ||||||||||||||||||| |||||    
T  9607622 aaacacgttgagaaacatgcaaacgtgcttttgtgtgtcgcaaacgggaaaccaaacacacacttaa 9607556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 478 - 608
Target Start/End: Original strand, 35998117 - 35998247
Alignment:
Q  478 tttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatg 577  Q
    |||||||||||||||| |||||||  | ||||||| ||||| |||||| || ||||| |  |||||||| ||||||| |||  | |||||||||||| ||    
T  35998117 tttgatggaaatcacgacaaaaaattacgttagcgaagaagttagtatttggagcttctaaaaatcacgacaaaaacgcatcaggaagcatgcaaacgtg 35998216  T
Q  578 cttttgtatgttgctaacgggaaaccaaaca 608  Q
    ||||||| | |||| ||||||||| ||||||    
T  35998217 cttttgtgtattgcaaacgggaaatcaaaca 35998247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 539 - 610
Target Start/End: Original strand, 16473494 - 16473565
Alignment:
Q  539 aaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacaca 610  Q
    ||||||||| ||||||||||||  |||| ||||||| ||||||||||||||||  | |||||||||||||||    
T  16473494 aaatcacggaaaaaacacattgagaagcgtgcaaacgtgcttttgtatgttgcagatgggaaaccaaacaca 16473565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 50845585 - 50845523
Alignment:
Q  326 tgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 388  Q
    ||||||||||||||  | |||||||| ||| |||||||| |||||||||||||||||||||||    
T  50845585 tgtttattcaattctgcacagttttgagaactctttcttataccaaaagaaaggttcctaaca 50845523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 611
Target Start/End: Original strand, 47555688 - 47555815
Alignment:
Q  486 aaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacgg--caaaaacacattggaaagcatgcaaacatgcttttg 583  Q
    |||||||  ||||||||||||||||  ||||||||| ||| |||| |||||| |||||||||   |||||||||||| ||| | || |||  || |||||    
T  47555688 aaatcacaacaaaaaaccatgttagtatagaagctaatatttgaaacttttgaaaatcacggaaaaaaaacacattgaaaaacgtgtaaatgtgattttg 47555787  T
Q  584 tatgttgctaacgggaaaccaaacacac 611  Q
      |||||| || ||||||||||||||||    
T  47555788 attgttgcaaatgggaaaccaaacacac 47555815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 565
Target Start/End: Complemental strand, 5502898 - 5502785
Alignment:
Q  452 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaa 551  Q
    |||||||| | ||||| |||| ||| |||||| ||||| |||  |||| |||||||||  ||||||| |||||| |  || ||||| |||||||| ||||    
T  5502898 tttggtactgtgtttgtaaaatagagtttgatagaaattacgataaaataccatgttaatgtagaagttagtatttagagtttttgaaaatcacgacaaa 5502799  T
Q  552 aacacattggaaag 565  Q
    || |||||||||||    
T  5502798 aatacattggaaag 5502785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 342 - 389
Target Start/End: Complemental strand, 24563815 - 24563767
Alignment:
Q  342 cccagttttgggaattctttct-tgtaccaaaagaaaggttcctaacag 389  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||    
T  24563815 cccagttttgggaattctttctgtataccaaaagaaaggttactaacag 24563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 611
Target Start/End: Original strand, 31133533 - 31133666
Alignment:
Q  478 tttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatg 577  Q
    ||||||| ||||||||| |||||| || ||||||||||||  |||||  |||| ||| |  |||| |||||||||| | || | |||  || ||||||||    
T  31133533 tttgatgaaaatcacggtaaaaaaacacgttagcgtagaaattagtacttgaaacttctaaaaataacggcaaaaataaatcgaaaaatatacaaacatg 31133632  T
Q  578 cttttgtatgttgctaacgggaaaccaaacacac 611  Q
     |||| ||| |||| ||| ||||| |||||||||    
T  31133633 tttttttatattgcaaacaggaaatcaaacacac 31133666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 463 - 608
Target Start/End: Original strand, 41146144 - 41146289
Alignment:
Q  463 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgga 562  Q
    ||||||||||| || |||||| |||||||||||||||||||| |||| ||||||| ||||||| || ||||| ||  ||||||||||||||   || |||    
T  41146144 gtttgcaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacgtagaaactagtatttggagcttatgagaatcacggcaaaaatgtatcgga 41146243  T
Q  563 aagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaaca 608  Q
    |||| |||||  |||||||||| |||||| ||||||||||||||||    
T  41146244 aagcgtgcaagtatgcttttgtgtgttgcaaacgggaaaccaaaca 41146289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 462 - 612
Target Start/End: Complemental strand, 11247090 - 11246940
Alignment:
Q  462 cgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgg 561  Q
    ||||||||||||  | ||||||||| ||||||||||||||| |  |||||| |||||||| ||| |||||||| || ||||||||  |||||||||||||    
T  11247090 cgtttgcaaaacgaagtttgatggagatcacggcaaaaaactactttagcgcagaagctaatatttgaagcttctgaaaatcacgataaaaacacattgg 11246991  T
Q  562 aaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacg 612  Q
     || | ||||||  || |||||| |||||| ||| | ||||||||||||||    
T  11246990 gaatcgtgcaaaagtgtttttgtgtgttgcaaacagaaaaccaaacacacg 11246940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 461 - 554
Target Start/End: Complemental strand, 39396951 - 39396858
Alignment:
Q  461 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaac 554  Q
    |||||||||||||||  || |||||||||||||||||||||||| ||||||  |||||||||||| || ||||| || ||||||||||||||||    
T  39396951 gcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaac 39396858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 519 - 613
Target Start/End: Original strand, 29471756 - 29471850
Alignment:
Q  519 ctagtatctgaagcttttggaaatcacggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgc 613  Q
    ||||||| |||||||| ||||||||||  ||||||  ||| || |||||||||||  ||||||| |||||||| ||||| |||||||||||||||    
T  29471756 ctagtatttgaagcttctggaaatcacaacaaaaatgcatcgggaagcatgcaaatgtgcttttatatgttgcaaacggaaaaccaaacacacgc 29471850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 3318288 - 3318201
Alignment:
Q  301 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 388  Q
    |||||| | |||||| |||||| ||  || |||||| ||  |||||||||||||| |||||||||| |||| ||||||||||||||||    
T  3318288 tttattatggttagatttatttctcaattgattcaaatctgcccagttttgggaagtctttcttgtgccaagagaaaggttcctaaca 3318201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 461 - 608
Target Start/End: Complemental strand, 41922093 - 41921946
Alignment:
Q  461 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattg 560  Q
    ||||||| ||||| || |||||| |||||||||||||||||||| |||| | ||||||||||||| || ||||| ||  ||||||||||||||  |||||    
T  41922093 gcgtttgaaaaacggagtttgatagaaatcacggcaaaaaaccacgttaacctagaagctagtatttggagcttatgagaatcacggcaaaaatgcattg 41921994  T
Q  561 gaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaaca 608  Q
    |||||  ||||||| || |||||| |||||| ||  ||||| ||||||    
T  41921993 gaaagtgtgcaaacgtgtttttgtgtgttgcaaagaggaaatcaaaca 41921946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 545
Target Start/End: Complemental strand, 47331666 - 47331584
Alignment:
Q  463 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcac 545  Q
    ||||| |||||| | ||||||| |||||||||||||||| ||  ||| | ||||||||||||| |||||||||| ||||||||    
T  47331666 gtttgtaaaacacaatttgatgaaaatcacggcaaaaaatcacattatcatagaagctagtatttgaagcttttagaaatcac 47331584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 43055866 - 43055805
Alignment:
Q  301 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttc 362  Q
    ||||||||||||||||| ||| |  | |||||||| |||  |||||||||||||||||||||    
T  43055866 tttattctagttagaatcattctcttatttattcatttctgcccagttttgggaattctttc 43055805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 54372409 - 54372469
Alignment:
Q  326 tgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaa 386  Q
    ||||||||||||||   |||||||||| || |||||  | |||||||||||||||||||||    
T  54372409 tgtttattcaattctgtccagttttggaaagtcttttctataccaaaagaaaggttcctaa 54372469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 461 - 554
Target Start/End: Original strand, 37850 - 37943
Alignment:
Q  461 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaac 554  Q
    |||||||||||||||  || |||||||||||||||||||||||| ||||||  |||||||||||| || ||||| || ||||||||||||||||    
T  37850 gcgtttgcaaaacagtgttcgatggaaatcacggcaaaaaaccacgttagcaaagaagctagtatttggagcttctgaaaatcacggcaaaaac 37943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 444 - 609
Target Start/End: Original strand, 15150774 - 15150939
Alignment:
Q  444 agtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatc 543  Q
    |||||||||||||||  ||||||| |||| ||  ||||||| |||||||| |||| ||||| |||||| |||||| |||||| |||| ||||| |||||     
T  15150774 agtgtctatttggtagagcgtttgaaaaatagggtttgatgaaaatcacgacaaacaaccacgttagcatagaagttagtatttgaaacttttagaaatt 15150873  T
Q  544 acggcaaaaacacattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacac 609  Q
    ||||||||||  ||||| ||||| || |||| || |||| | |||||| ||  |||||||||||||    
T  15150874 acggcaaaaatgcattgaaaagcgtgtaaacttgtttttatttgttgcaaagaggaaaccaaacac 15150939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 591
Target Start/End: Original strand, 12429731 - 12429871
Alignment:
Q  452 tttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaac-catgttagcgtagaagctagtatctgaagcttttggaaatcacggcaa 550  Q
    |||||||| | |||||||||||||  ||||||||||||||||||||||||| || ||||||| | ||||||| || |  ||||| |  ||||||||||||    
T  12429731 tttggtacagtgtttgcaaaacagtgtttgatggaaatcacggcaaaaaactcacgttagcgaataagctagaatttagagcttatcaaaatcacggcaa 12429830  T
Q  551 aaacacattggaaagcatgcaaacatgcttttgtatgttgc 591  Q
    |||  ||||||||||| ||||||| ||||||| | ||||||    
T  12429831 aaatgcattggaaagcgtgcaaacgtgcttttatgtgttgc 12429871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 456 - 611
Target Start/End: Original strand, 37018811 - 37018960
Alignment:
Q  456 gtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaaca 555  Q
    |||| ||||||||||| |||| |||||||||||| |||||||||||||| ||||||||||     |||||  | ||| | ||||||||||||||||| ||    
T  37018811 gtaccgcgtttgcaaagcagagtttgatggaaattacggcaaaaaaccacgttagcgtag-----agtattaggagc-tctggaaatcacggcaaaatca 37018904  T
Q  556 cattggaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacac 611  Q
    |||  |||||| | ||||||| ||||| | |||||| |||| ||||||||||||||    
T  37018905 catcagaaagcgtacaaacatacttttatgtgttgcaaacgcgaaaccaaacacac 37018960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 461 - 610
Target Start/End: Complemental strand, 37060418 - 37060269
Alignment:
Q  461 gcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattg 560  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||  ||||||| |||||| || ||||| |  || ||| | ||| ||| ||||     
T  37060418 gcgtttgcaaaacagagttggatggaaatcacggcaaaaaatcatgttaatgtagaagttagtatttggagcttctaaaattcatgacaataacgcattc 37060319  T
Q  561 gaaagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacaca 610  Q
    |||| |||||||||  | |||||| |||||| ||| | ||||||||||||    
T  37060318 gaaaacatgcaaacgcgtttttgtgtgttgcaaacagaaaaccaaacaca 37060269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 38268502 - 38268440
Alignment:
Q  326 tgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 388  Q
    |||||||||||||| |||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  38268502 tgtttattcaattctacccggttttaggaattctttcttataccaaacgaaaggttcctaaca 38268440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 616
Target Start/End: Original strand, 38153333 - 38153486
Alignment:
Q  463 gtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaacacattgga 562  Q
    |||||||| || || ||||||| || ||||||||||||| ||  ||| ||| ||||||||||| |||||||| || ||||||| ||||||| | || |      
T  38153333 gtttgcaagacggaatttgatgaaagtcacggcaaaaaatcagtttaacgtggaagctagtatttgaagcttctgcaaatcacagcaaaaagatatcgag 38153432  T
Q  563 aagcatgcaaacatgcttttgtatgttgctaacgggaaaccaaacacacgctta 616  Q
    | || |  |||| || |||||| |||||  |||||||||||||||||| |||||    
T  38153433 aggcgtataaacgtgattttgtgtgttggaaacgggaaaccaaacacatgctta 38153486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 15156664 - 15156589
Alignment:
Q  443 tagtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaag 518  Q
    ||||||||  ||| ||| ||||||||||||| || |||||||||||| || |||||||| ||||||| ||||||||    
T  15156664 tagtgtctgattgatactgcgtttgcaaaaccgagtttgatggaaattacagcaaaaaatcatgttaacgtagaag 15156589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 38433231 - 38433318
Alignment:
Q  301 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcctaaca 388  Q
    |||||||||||||||| | || || ||||||||||| ||  ||| |||| |||||||||||||| || ||||||||||||| ||||||    
T  38433231 tttattctagttagaacttttcttttgtttattcaaatctgccctgtttagggaattctttcttatagcaaaagaaaggttgctaaca 38433318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 7863506 - 7863576
Alignment:
Q  314 gaattatttttctgtttattcaattccacccagttttgggaattctttcttgtaccaaaagaaaggttcct 384  Q
    ||||||||| ||  |||| |||||||  ||||||||| ||||| ||||||||||||||||||||| |||||    
T  7863506 gaattatttctcattttactcaattctgcccagtttttggaatactttcttgtaccaaaagaaagattcct 7863576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 43832752 - 43832664
Alignment:
Q  301 tttattctagttagaattatttttctgtttattcaattccacccagttttgggaattcttt-cttgtaccaaaagaaaggttcctaaca 388  Q
    ||||||||||||||||| ||| |  ||||||||||| ||  | |||||||| ||||||||| | | || ||||||||||||||||||||    
T  43832752 tttattctagttagaatcattctcttgtttattcaaatctgctcagttttgagaattctttccatatatcaaaagaaaggttcctaaca 43832664  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 553
Target Start/End: Complemental strand, 6807180 - 6807123
Alignment:
Q  496 aaaaaaccatgttagcgtagaagctagtatctgaagcttttggaaatcacggcaaaaa 553  Q
    |||||||||||||  ||||||||||||||| |  ||||| |||||||||| |||||||    
T  6807180 aaaaaaccatgttgacgtagaagctagtatttagagcttctggaaatcacagcaaaaa 6807123  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 36639160 - 36639087
Alignment:
Q  445 gtgtctatttggtacggcgtttgcaaaacagactttgatggaaatcacggcaaaaaaccatgttagcgtagaag 518  Q
    ||||||||||| |||  |||||||||||| || ||||||| |||||||  |||||||  |||||| ||||||||    
T  36639160 gtgtctatttgatacaacgtttgcaaaacggagtttgatgaaaatcacaacaaaaaattatgttatcgtagaag 36639087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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