View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659-Insertion-4 (Length: 792)
Name: NF5659-Insertion-4
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 336 - 765
Target Start/End: Original strand, 41206508 - 41206931
Alignment:
| Q |
336 |
tgatgcaaagcgcgcaatatctacttgttgattgcactcttttgggaaggtgtgggaaggaattatgtattggttagacatttcttctgtgttatctaat |
435 |
Q |
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| T |
41206508 |
tgatgcaaagcgcgcaatatctacttgttgattgcacttttttgggaaggtgtgggaagga-ttatgtgttggttagacatttcttgtgtgttatctaat |
41206606 |
T |
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| Q |
436 |
caggatcatttgcacgcaatagttcaataactttcttagagtcccaaggagtctcaattatctttatgacgttttagatgacatatgttattaggttatt |
535 |
Q |
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| T |
41206607 |
caggatcatttacacgcaatagttcaatagccttcttagagtttcaaggagtctcaattatctttatgacgttttagatgacatatgttattaggttatt |
41206706 |
T |
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| Q |
536 |
tgaaaagagagaaataatacggtcttgatcatgaagaatcatatatcttttgacgcaattaattgaccgtaagggtggttaaaaagca-tgattgcctat |
634 |
Q |
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| T |
41206707 |
tgaaaagagagaaataatacggtcttgatcatgaagaatcatatatc-tttgacgcaattaattgaccgtgtgggtggtt-aaaagcattgattgcctat |
41206804 |
T |
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| Q |
635 |
tttgtgtatgatttggaatatcacgttgcttagccctatgagttgttgcattagctcttatttcagagggnnnnnnnnnggtttgcattggtgcttatag |
734 |
Q |
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| T |
41206805 |
tttgtgtatgattt-gaatatcatgttgcttagccctatgagttgttgcattagctcttatttcagagg--tttttttttgtttgcatt-gtgcttatag |
41206900 |
T |
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| Q |
735 |
ttctcggcatatcatgattttctgtcatttt |
765 |
Q |
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| T |
41206901 |
ttctcggcatatcatgattttctgtcgtttt |
41206931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 41206183 - 41206411
Alignment:
| Q |
14 |
cattctagaagtaagtttcacatgtttacctcattaagaaaaacatgtttatatgtcacccttcaatttataatagatgtcacaatcaaattggtaaaac |
113 |
Q |
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| T |
41206183 |
cattctagaagtaagtttcacatgtttacctcattaagaaaaacatgtttatatgtcacccttcaatttataatagatgtcacaatcaaattggtaaaac |
41206282 |
T |
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| Q |
114 |
attggtgagtgttttaggcttggtcaatttggtttaagaatctcacccaaaaagtaattggtttaagaaatatgctaagaaaaagaatagaaaattagat |
213 |
Q |
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| T |
41206283 |
attggtgagtgttttaggcttggtcaatttggtttaagaatctcacccaaaaagtaattggtttaagaaatatgctaagaaaaagaatagaaaattagat |
41206382 |
T |
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| Q |
214 |
gactgtttagtacataatttgttagaaga |
242 |
Q |
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| T |
41206383 |
gactgtttagtacataatttgttagaaga |
41206411 |
T |
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