View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659-Insertion-5 (Length: 270)
Name: NF5659-Insertion-5
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 8016044 - 8016299
Alignment:
| Q |
8 |
gtatttaccttttattttggtggattggtctatgattttgtgagaaattggtgaaaattgtagtagctttggtggctgtaatatttttaa-tttgacagg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8016044 |
gtatttaccttttattttggtggattggtctatgattttgtgagaaattggtgaaaattgtagtagctttggtggctgtaatatttttaaatttgacagg |
8016143 |
T |
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| Q |
107 |
ttcagtttttaatttgagattcagtttgtgaggaagagggactgttatcccatcgtgaatcacggttgcaaatggcgttggtgatttcccatcgcgaatc |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8016144 |
ttcagtttttaatttgaggttcagtttgtgaggaagagggactgttatcccatcgtgaatcacggttgcaaatggcgttggtgatttcccatcgcgaatc |
8016243 |
T |
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| Q |
207 |
actgttatcccgtcatgaatcatggatgcaaacagcgatggtgtggagaccaggat |
262 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8016244 |
actgttatcccgtcatgaatcatggttgcaaacagcgatggtgtggagaccaggat |
8016299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 19830066 - 19829949
Alignment:
| Q |
8 |
gtatttaccttttattttggtggattggtctatgattttgtgagaaattggtgaaaattgtagtagctttggtggctgtaatattttt--aatttgacag |
105 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||| || |
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| T |
19830066 |
gtattttccttttattttggtggatgggtctatgattttgtgagaaattggtgaaaattgtagtagctatggtgacagtaatatttttacaatttcacta |
19829967 |
T |
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| Q |
106 |
gttcagtttttaatttga |
123 |
Q |
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| T |
19829966 |
gttcagtttttaatttga |
19829949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 13007223 - 13007118
Alignment:
| Q |
8 |
gtatttaccttttattttggtggattggtctatgattttgtgagaaattggtgaaaattgtagtagctttggtggctgtaatattttt-aatttgacagg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13007223 |
gtatttaccttttattttggtggattggtctatgattttgtga-----------aaattgtagtagctttggtggctgtaatatttttaaatttgacagg |
13007135 |
T |
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| Q |
107 |
ttcagtttttaatttga |
123 |
Q |
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||||||||||||||||| |
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| T |
13007134 |
ttcagtttttaatttga |
13007118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 13007090 - 13007027
Alignment:
| Q |
207 |
actgttatcccgtcatgaatcatggatgcaaacagcgatggtgtggagaccaggatcatcatgg |
270 |
Q |
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||||| ||||| || ||||||| | |||||| |||||||||||||||||||||||||||||| |
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| T |
13007090 |
actgtgatcccatcgtgaatcacagttgcaaatggcgatggtgtggagaccaggatcatcatgg |
13007027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 13007090 - 13007048
Alignment:
| Q |
147 |
actgttatcccatcgtgaatcacggttgcaaatggcgttggtg |
189 |
Q |
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| T |
13007090 |
actgtgatcccatcgtgaatcacagttgcaaatggcgatggtg |
13007048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 25509924 - 25510007
Alignment:
| Q |
9 |
tatttaccttttattttggtggattggtctatgattttgtgagaaattggtgaaaattgtagtagctttggtggctgtaatatt |
92 |
Q |
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||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
25509924 |
tatttgccttttattttggtggattagtctataattttgtgagacattggtgaaaattgtagtagctttggtggcagtaatatt |
25510007 |
T |
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