View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659-Insertion-6 (Length: 943)

Name: NF5659-Insertion-6
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659-Insertion-6
NF5659-Insertion-6
[»] chr8 (39 HSPs)
chr8 (373-755)||(26378030-26378411)
chr8 (8-147)||(26377695-26377834)
chr8 (286-422)||(14130107-14130244)
chr8 (284-432)||(24730972-24731121)
chr8 (280-432)||(2189722-2189874)
chr8 (280-419)||(26374836-26374975)
chr8 (623-763)||(44609070-44609208)
chr8 (286-421)||(20693741-20693877)
chr8 (628-758)||(13145131-13145260)
chr8 (265-346)||(26377952-26378033)
chr8 (289-422)||(2687687-2687821)
chr8 (286-409)||(16598190-16598315)
chr8 (305-434)||(24731188-24731318)
chr8 (437-545)||(26380482-26380592)
chr8 (288-381)||(2609547-2609640)
chr8 (286-405)||(24578804-24578924)
chr8 (286-359)||(16598108-16598181)
chr8 (286-339)||(30440679-30440732)
chr8 (289-392)||(2689092-2689195)
chr8 (321-409)||(18468626-18468714)
chr8 (288-380)||(24577581-24577673)
chr8 (281-377)||(2188397-2188495)
chr8 (290-381)||(25479457-25479548)
chr8 (349-420)||(42890397-42890468)
chr8 (344-432)||(22926648-22926737)
chr8 (344-424)||(42891672-42891753)
chr8 (344-432)||(22921850-22921939)
chr8 (344-424)||(23570584-23570665)
chr8 (344-432)||(6845336-6845425)
chr8 (344-432)||(22512046-22512135)
chr8 (344-432)||(22519346-22519435)
chr8 (294-359)||(28263840-28263905)
chr8 (344-421)||(22520810-22520888)
chr8 (344-433)||(37189866-37189956)
chr8 (267-331)||(30442450-30442514)
chr8 (289-419)||(31072134-31072271)
chr8 (396-432)||(18180713-18180749)
chr8 (286-340)||(10629211-10629265)
chr8 (905-943)||(26378504-26378541)
[»] chr4 (31 HSPs)
chr4 (286-422)||(13991389-13991526)
chr4 (284-424)||(40206088-40206229)
chr4 (623-763)||(20357031-20357170)
chr4 (623-763)||(26439768-26439907)
chr4 (623-758)||(1990838-1990972)
chr4 (286-420)||(7634022-7634157)
chr4 (289-426)||(21433569-21433707)
chr4 (295-404)||(18689549-18689659)
chr4 (289-393)||(10494848-10494953)
chr4 (286-381)||(9260515-9260610)
chr4 (286-416)||(22486792-22486921)
chr4 (287-381)||(13990729-13990823)
chr4 (344-432)||(6659331-6659419)
chr4 (341-431)||(7723665-7723754)
chr4 (295-420)||(18657054-18657180)
chr4 (286-393)||(38888029-38888137)
chr4 (284-433)||(19935426-19935576)
chr4 (300-408)||(15848361-15848469)
chr4 (327-432)||(24667640-24667745)
chr4 (287-363)||(28897913-28897990)
chr4 (314-422)||(17254893-17255002)
chr4 (314-426)||(7724083-7724193)
chr4 (289-406)||(3675056-3675174)
chr4 (634-715)||(16878976-16879057)
chr4 (294-386)||(53477261-53477353)
chr4 (350-432)||(50515896-50515978)
chr4 (286-340)||(3765300-3765354)
chr4 (289-323)||(7635235-7635269)
chr4 (286-324)||(17255007-17255045)
chr4 (306-354)||(50519224-50519272)
chr4 (343-415)||(54700614-54700687)
[»] chr3 (19 HSPs)
chr3 (623-763)||(3297151-3297290)
chr3 (623-763)||(11004130-11004269)
chr3 (284-433)||(2472688-2472838)
chr3 (292-421)||(2107866-2107994)
chr3 (284-433)||(365592-365742)
chr3 (284-358)||(1320124-1320198)
chr3 (286-432)||(8536369-8536520)
chr3 (623-754)||(43772920-43773049)
chr3 (344-434)||(43303958-43304049)
chr3 (288-371)||(41152493-41152577)
chr3 (344-432)||(43306672-43306761)
chr3 (344-432)||(5128909-5128998)
chr3 (321-409)||(45168343-45168434)
chr3 (284-409)||(5324655-5324778)
chr3 (288-422)||(52708798-52708923)
chr3 (344-432)||(3063737-3063826)
chr3 (368-432)||(3068875-3068940)
chr3 (286-316)||(20400732-20400762)
chr3 (341-422)||(33175832-33175914)
[»] chr2 (33 HSPs)
chr2 (285-420)||(23457587-23457723)
chr2 (280-422)||(12966412-12966555)
chr2 (286-432)||(33051560-33051707)
chr2 (302-432)||(15129347-15129478)
chr2 (289-421)||(5171596-5171729)
chr2 (285-424)||(4184869-4185010)
chr2 (280-432)||(36647228-36647381)
chr2 (267-421)||(21772298-21772452)
chr2 (289-416)||(28737782-28737910)
chr2 (661-763)||(1499640-1499742)
chr2 (631-763)||(1500714-1500845)
chr2 (284-432)||(1518130-1518281)
chr2 (286-420)||(32163783-32163919)
chr2 (280-377)||(36615144-36615243)
chr2 (288-413)||(32161988-32162115)
chr2 (286-422)||(8294522-8294657)
chr2 (280-378)||(36648901-36649001)
chr2 (286-405)||(33053359-33053479)
chr2 (286-400)||(1218319-1218434)
chr2 (344-433)||(27952317-27952407)
chr2 (344-432)||(31636337-31636426)
chr2 (289-414)||(18945905-18946031)
chr2 (294-379)||(12123950-12124035)
chr2 (344-432)||(22011436-22011525)
chr2 (349-432)||(2155972-2156056)
chr2 (344-432)||(33655628-33655716)
chr2 (62-146)||(23457362-23457446)
chr2 (344-432)||(27956154-27956243)
chr2 (349-422)||(28737911-28737984)
chr2 (349-432)||(31634109-31634193)
chr2 (297-366)||(19582063-19582132)
chr2 (302-390)||(23456533-23456622)
chr2 (290-360)||(280076-280146)
[»] chr1 (29 HSPs)
chr1 (623-763)||(9022243-9022382)
chr1 (284-435)||(31915489-31915641)
chr1 (286-419)||(12944058-12944192)
chr1 (289-422)||(50713658-50713792)
chr1 (285-422)||(239628-239766)
chr1 (286-422)||(10925682-10925816)
chr1 (286-413)||(10927136-10927262)
chr1 (286-432)||(28660747-28660894)
chr1 (267-422)||(23987494-23987655)
chr1 (285-416)||(43681400-43681535)
chr1 (286-422)||(9030958-9031096)
chr1 (286-422)||(8221430-8221567)
chr1 (294-421)||(10928239-10928367)
chr1 (293-387)||(8967850-8967944)
chr1 (287-381)||(9194994-9195088)
chr1 (286-422)||(28661078-28661214)
chr1 (344-434)||(8931220-8931311)
chr1 (291-393)||(33152758-33152863)
chr1 (344-434)||(50857442-50857533)
chr1 (326-420)||(31913359-31913453)
chr1 (316-433)||(36694153-36694270)
chr1 (316-433)||(36710254-36710371)
chr1 (278-425)||(40058109-40058255)
chr1 (286-336)||(9199312-9199362)
chr1 (301-422)||(21903709-21903830)
chr1 (349-406)||(13444015-13444072)
chr1 (296-420)||(28659577-28659704)
chr1 (289-422)||(26981450-26981589)
chr1 (366-426)||(13441612-13441673)
[»] chr7 (38 HSPs)
chr7 (291-422)||(11000836-11000968)
chr7 (286-427)||(1365613-1365755)
chr7 (286-422)||(1369747-1369884)
chr7 (289-420)||(5934549-5934681)
chr7 (284-433)||(4888685-4888835)
chr7 (284-421)||(3778720-3778863)
chr7 (286-393)||(24840085-24840193)
chr7 (284-420)||(30217753-30217890)
chr7 (286-408)||(11228923-11229046)
chr7 (286-422)||(6451760-6451897)
chr7 (286-422)||(27142608-27142745)
chr7 (286-420)||(8916389-8916524)
chr7 (286-422)||(1786625-1786763)
chr7 (284-432)||(2767870-2768015)
chr7 (287-410)||(35814814-35814937)
chr7 (297-432)||(1874493-1874627)
chr7 (286-409)||(27309638-27309762)
chr7 (286-368)||(1690196-1690278)
chr7 (267-393)||(8063843-8063961)
chr7 (284-430)||(1883435-1883576)
chr7 (285-381)||(11228661-11228758)
chr7 (344-432)||(13882686-13882775)
chr7 (349-432)||(13886159-13886243)
chr7 (344-433)||(859155-859245)
chr7 (344-433)||(1217159-1217249)
chr7 (294-372)||(18790234-18790311)
chr7 (316-433)||(7803030-7803148)
chr7 (314-422)||(4133284-4133393)
chr7 (288-341)||(4955956-4956009)
chr7 (623-733)||(8482532-8482642)
chr7 (286-422)||(19404118-19404257)
chr7 (286-324)||(4133398-4133436)
chr7 (289-323)||(8915279-8915313)
chr7 (344-430)||(1220442-1220529)
chr7 (336-390)||(1753640-1753695)
chr7 (289-332)||(1785499-1785541)
chr7 (89-147)||(11001101-11001159)
chr7 (367-424)||(29175780-29175838)
[»] scaffold0014 (1 HSPs)
scaffold0014 (661-763)||(11254-11356)
[»] scaffold0251 (1 HSPs)
scaffold0251 (286-420)||(9644-9780)
[»] chr5 (8 HSPs)
chr5 (286-422)||(22440799-22440936)
chr5 (286-414)||(492508-492638)
chr5 (299-422)||(26140298-26140422)
chr5 (284-422)||(18252356-18252495)
chr5 (294-422)||(8456389-8456520)
chr5 (297-386)||(19497351-19497441)
chr5 (344-431)||(21848966-21849054)
chr5 (344-434)||(40778784-40778875)
[»] chr6 (24 HSPs)
chr6 (288-432)||(27822118-27822264)
chr6 (289-412)||(1127199-1127323)
chr6 (267-426)||(18727849-18728011)
chr6 (286-419)||(32361310-32361443)
chr6 (301-434)||(33615502-33615636)
chr6 (286-417)||(11658873-11659005)
chr6 (289-422)||(12882067-12882202)
chr6 (306-420)||(8048978-8049092)
chr6 (284-386)||(24443118-24443220)
chr6 (344-432)||(3536034-3536123)
chr6 (286-422)||(12778417-12778547)
chr6 (351-422)||(18727115-18727186)
chr6 (295-354)||(34373865-34373924)
chr6 (344-432)||(3542245-3542334)
chr6 (314-410)||(33215185-33215282)
chr6 (267-331)||(14216818-14216882)
chr6 (349-432)||(30049921-30050005)
chr6 (344-426)||(29340812-29340895)
chr6 (327-414)||(14238419-14238507)
chr6 (349-405)||(30052208-30052264)
chr6 (297-426)||(22910754-22910885)
chr6 (351-431)||(18718201-18718279)
chr6 (289-378)||(24664209-24664298)
chr6 (289-393)||(33693866-33693969)
[»] scaffold0054 (3 HSPs)
scaffold0054 (286-419)||(37654-37786)
scaffold0054 (285-420)||(49263-49398)
scaffold0054 (298-426)||(10608-10738)
[»] scaffold0024 (2 HSPs)
scaffold0024 (288-433)||(145677-145823)
scaffold0024 (284-379)||(143974-144066)
[»] scaffold0240 (3 HSPs)
scaffold0240 (286-411)||(1599-1725)
scaffold0240 (286-416)||(15989-16119)
scaffold0240 (318-420)||(14821-14923)
[»] scaffold0090 (1 HSPs)
scaffold0090 (290-405)||(15092-15207)
[»] scaffold0330 (1 HSPs)
scaffold0330 (289-411)||(17584-17707)
[»] scaffold0110 (2 HSPs)
scaffold0110 (321-432)||(46733-46846)
scaffold0110 (344-426)||(45268-45351)
[»] scaffold0531 (1 HSPs)
scaffold0531 (349-420)||(11601-11672)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 373 - 755
Target Start/End: Original strand, 26378030 - 26378411
Alignment:
Q  373 gaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtcaaaccaaaaattgtttcatccaaaaatcaaatttagaatag 472  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26378030 gaacttgttcttttcaatctagatttagcgcttgctagcctacgcttccgtactacgtcaaaccaaaaattgtttcatccaaaaatcaaatttagaatag 26378129  T
Q  473 ttacatttatgtactttttggacccaatatgcaacacatttatttgcctcttcattactctagtgtttggacaacacactttagctcgaaaaaattagta 572  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||    
T  26378130 ttacatttatgtactttttggacccaatatgcaacacatttatttgcctcttcattactctagtttttggacaacaca-attagctcgaaaaaa-tagta 26378227  T
Q  573 aagcagtagatgtcgttttcatgttactttttcttttcatttagagtgcatgtgtttggatagagaattttaatgaggaaatataatatttttggagtat 672  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  26378228 aagcagtagatgtcgttttcatgttactttttcttttcttttagagtgcatgtgtttggatagagaattttaatgaggaaatgtaatatttttgaagtat 26378327  T
Q  673 ttaaattgatttggcccaaattccactgtttgggaatatatttaagtca-tttttaaaattcaaggcatttagataagaatttc 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  26378328 ttaaattgatttggcccaaattccactgtttgggaatatatttaagtcattttttaaacttcaaggcatttagataagaatttc 26378411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 26377695 - 26377834
Alignment:
Q  8 ttgccaagcaattatatttcactcaatgggatccacgagagtagtctcttgtagtcttgttcattggaagattcaacatgcatcagaatgagaatttggg 107  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26377695 ttgccaagcaattatatttcactcaataggatccacgagggtggtctcttgtagtcttgttcattggaagattcaacatgcatcagaatgagaacttggg 26377794  T
Q  108 gtctgagttcttcaaa-gtggaggagattgatgtaggaggg 147  Q
    ||| |||||||||||| |||||||||| |||||||||||||    
T  26377795 gtc-gagttcttcaaaggtggaggagactgatgtaggaggg 26377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 14130107 - 14130244
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tctt 384  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| ||||||| ||||    
T  14130107 aacttttattcattcaataatattttggagagttttctcaatttctggtggattccggaaccttattttcacaaatttatcgcttgcaaacttgtctctt 14130206  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||| ||||| ||||| ||||||| ||||||||||||||    
T  14130207 ttcgatctagatttaacgcttgcaagcctacgcttccg 14130244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 284 - 432
Target Start/End: Original strand, 24730972 - 24731121
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-c 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | || | ||||||||||| ||||| |||||| |||||||| |    
T  24730972 ataacttttattcattcaataatattttagagagttttctcaatttttgatggattccgaaatcctattttcacaagtttgttgcttgcaaacttgttcc 24731071  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  24731072 ttttcaatctaaatttagcgcttgctagcctacggttctgtactgcgtca 24731121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 280 - 432
Target Start/End: Complemental strand, 2189874 - 2189722
Alignment:
Q  280 aggcataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg 379  Q
    |||||||||||||||||| ||||||||| |||||||  |||||||| ||| ||||||||||   |||| ||||||||||| |||||||||||| ||||||    
T  2189874 aggcataacttttattcaatcaataatactttagagttttttctcattttttggtggattccaaaaccttattttcacaagtttgtcgcttgcaaacttg 2189775  T
Q  380 ttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||| |||||    
T  2189774 ttcttttcaatcgaggtttagcgcttgctagcctacgcttccgtactgcgtca 2189722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 280 - 419
Target Start/End: Original strand, 26374836 - 26374975
Alignment:
Q  280 aggcataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg 379  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  | |||| |||||| |||| |||||||||||||||||||    
T  26374836 aggcataacttttattcattcaataataatttagagagttttcttaatttctggtggatttcgaaaccctatttttacaagtttgtcgcttgcgaacttg 26374935  T
Q  380 ttcttttcaatctaaatttagcgcttgctagcctacgctt 419  Q
    ||||||||||||||   ||| ||||||||||| |||||||    
T  26374936 ttcttttcaatctaggcttaacgcttgctagcttacgctt 26374975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 623 - 763
Target Start/End: Original strand, 44609070 - 44609208
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    |||||||||||| || |||||| ||||| ||  ||||  |||||||||||||||||||| ||| ||||||||| | |||||||||| |||||||||||||    
T  44609070 tgtgtttggataaagcattttagtgagggaaagtaat--ttttggagtatttaaattgacttgacccaaattctattgtttgggaaaatatttaagtcat 44609167  T
Q  723 ttttaaaattcaaggcatttagataagaatttctctcttgc 763  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  44609168 ttttaaaattcaaggcatttagataagaatttctcttttgc 44609208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 286 - 421
Target Start/End: Original strand, 20693741 - 20693877
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| || ||    
T  20693741 aacttttattacttcaataatactttagagagttttctcaatttctgatggattccggaaccatattttcacaaatttgtcgcttgcaaacttgtttatt 20693840  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttcc 421  Q
    |||||||||  |||| | || ||||||||||||||||    
T  20693841 ttcaatctaggtttaaccctcgctagcctacgcttcc 20693877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 628 - 758
Target Start/End: Original strand, 13145131 - 13145260
Alignment:
Q  628 ttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcattttta 727  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||| |||||| ||||||| || ||||||||||||||||||    
T  13145131 ttggatagagaattttaatgagggaatgtaat-tttttggagtatttaaattgacttggcccatattccattgtttggaaaaatatttaagtcattttta 13145229  T
Q  728 aaattcaaggcatttagataagaatttctct 758  Q
    ||||||||   |||||||||||||| |||||    
T  13145230 aaattcaacagatttagataagaatctctct 13145260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 26377952 - 26378033
Alignment:
Q  265 atagttgtagcttaaaggcataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaac 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26377952 atagttgtagcttaaaggcataacttttattcattcaataatattttagagagttttctcaatttctagtggattctggaac 26378033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 2687687 - 2687821
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-ttttc 387  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||| ||||||||| |||||    
T  2687687 ttttattcattcaataatatttcaaagagttttctcaatttcttgtggattctagaaccctattttcacaagtttgtcgcttgcaaacttgttctttttc 2687786  T
Q  388 aatctaaatttagcgcttgctagcctacgcttccg 422  Q
     |||||  ||||||||| ||||| || ||||||||    
T  2687787 tatctaggtttagcgctcgctagtcttcgcttccg 2687821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 286 - 409
Target Start/End: Original strand, 16598190 - 16598315
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaattt-ctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttct 383  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||| |||||||| ||| |||||| ||||    
T  16598190 aacttttattcattcaataatattttagagagttttctcaatttactggtgtattttggaaccctattttcacaagtttgtcgcgtgcaaacttgtttct 16598289  T
Q  384 tttcaatctaaatttagcgcttgcta 409  Q
    ||  ||||||| ||||||||||||||    
T  16598290 ttctaatctaagtttagcgcttgcta 16598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 305 - 434
Target Start/End: Original strand, 24731188 - 24731318
Alignment:
Q  305 atattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-cttttcaatctaaatttagcgc 403  Q
    |||||||||||||||||||||||||||| || |||| | |||  ||||||||||| ||||| |||||| |||||||| ||||||||||||  ||||||||    
T  24731188 atattttagagagttttctcaatttctgatgaattccgaaactctattttcacaagtttgttgcttgcaaacttgttccttttcaatctaggtttagcgc 24731287  T
Q  404 ttgctagcctacgcttccgtactacgtcaaa 434  Q
    ||||||||||||||| ||||||| |||||||    
T  24731288 ttgctagcctacgctcccgtactgcgtcaaa 24731318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 437 - 545
Target Start/End: Original strand, 26380482 - 26380592
Alignment:
Q  437 aaaaattgtttcatccaaaaatcaaatttagaatagttac--atttatgtactttttggacccaatatgcaacacatttatttgcctcttcattactcta 534  Q
    ||||||||||||||| |||||| ||||||| |||||||||  ||||| ||| |||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  26380482 aaaaattgtttcatcaaaaaattaaatttaaaatagttaccaatttacgtagtttttggacctaatctgcaacacatttatttgcctcttcattgctcta 26380581  T
Q  535 gtgtttggaca 545  Q
     | ||||||||    
T  26380582 ctttttggaca 26380592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 288 - 381
Target Start/End: Complemental strand, 2609640 - 2609547
Alignment:
Q  288 cttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt 381  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||| |||| ||||||||||| |||||| ||||| ||||||||    
T  2609640 cttttattcattcaataatatttcagagagctttatcaatttctggtgaattctgtaaccctattttcacaagtttgtcacttgcaaacttgtt 2609547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 286 - 405
Target Start/End: Complemental strand, 24578924 - 24578804
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    |||||||||| ||| |||||||||||||||||||||| |||||||| ||||||||  ||||| |||||||||| ||||  ||||||| |||||| |||||    
T  24578924 aacttttatttattaaataatattttagagagttttcacaatttctagtggattccagaaccctattttcacagatttaccgcttgcaaacttgtttctt 24578825  T
Q  385 ttcaatctaaatttagcgctt 405  Q
    ||| |||||  ||||||||||    
T  24578824 ttcgatctaggtttagcgctt 24578804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 16598108 - 16598181
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaa 359  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||||| |||||||||||    
T  16598108 aacttttattcattcaataatattttagagagttttctcagtttctggtgtatttcggaaccctattttcacaa 16598181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 30440679 - 30440732
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggatt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30440679 aacttttattcattcaataatattttagagagttttctcaatttctggtggatt 30440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 2689092 - 2689195
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttc 387  Q
    |||||||| |||||||| |||| |||||||||||||||||||| |||||| | |||||| ||||||||||  |||||||||||| |||||| ||||||||    
T  2689092 ttttattctttcaataaaatttcagagagttttctcaatttct-gtggatgccggaaccctattttcacagttttgtcgcttgcaaacttgtttcttttc 2689190  T
Q  388 aatct 392  Q
    |||||    
T  2689191 aatct 2689195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 18468626 - 18468714
Alignment:
Q  321 tctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgcta 409  Q
    |||||||||||||||||||| |||||| ||||||||||| |||||||||||| | |||||||||||| | |||  ||||||||||||||    
T  18468626 tctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaagcttgttcttttctacctaggtttagcgcttgcta 18468714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 288 - 380
Target Start/End: Complemental strand, 24577673 - 24577581
Alignment:
Q  288 cttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||  |||||||||  ||||||  |||| |||||||    
T  24577673 cttttattcattcaataatattttagagagttttctcaatttctggtggattacgaaaccccattttcacatgtttgtcatttgcaaacttgt 24577581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 281 - 377
Target Start/End: Complemental strand, 2188495 - 2188397
Alignment:
Q  281 ggcataacttttattcattcaataatattttagagag--ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaact 377  Q
    ||||||||||||||||| |||||||||||||||||||  |||||| |||||||||||||||   ||||| |||||| |||| |||||||||||| ||||    
T  2188495 ggcataacttttattcaatcaataatattttagagagttttttcttaatttctggtggatttcagaaccctatttttacaattttgtcgcttgcaaact 2188397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 25479548 - 25479457
Alignment:
Q  290 tttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt 381  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||| |||||||| | ||||||| ||||| | ||||||    
T  25479548 tttattcattcaataaaatttcagagagttttctcaaattctggtggattccggaaccttattttcaaagatttgtcacttgcaaccttgtt 25479457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 349 - 420
Target Start/End: Original strand, 42890397 - 42890468
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||  |||||||||||||||||||||||||    
T  42890397 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagcctacgcttc 42890468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 22926737 - 22926648
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  |||||||||| || | ||||||||||||||||||||||    
T  22926737 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgctttctaaccctacgcttccgtactacgtca 22926648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 42891753 - 42891672
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctag-cctacgcttccgta 424  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||||| ||||||||||||||    
T  42891753 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctagccctacgcttccgta 42891672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 22921939 - 22921850
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| ||||| |||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  22921939 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 22921850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 344 - 424
Target Start/End: Original strand, 23570584 - 23570665
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgta 424  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||| | ||||||||||||||    
T  23570584 aaccttattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgta 23570665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 6845336 - 6845425
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| ||| |||||||  |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  6845336 aaccctattttcacaagtttatcgcttgtaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 6845425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 22512135 - 22512046
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| | |||  ||||||||||||| | ||||| |||||||||| |||||    
T  22512135 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtca 22512046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 22519435 - 22519346
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| | |||  ||||||||||||| | ||||| |||||||||| |||||    
T  22519435 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctacctaggtttagcgcttgctaaccctacacttccgtactgcgtca 22519346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 28263905 - 28263840
Alignment:
Q  294 ttcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaa 359  Q
    |||||||||||||||||||||||||||||  |||||||| |||| ||| ||||| |||||||||||    
T  28263905 ttcattcaataatattttagagagttttcataatttctgctggactctagaaccctattttcacaa 28263840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 22520888 - 22520810
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttcc 421  Q
    |||| |||||||||||||||||||||||| |||||| ||||||| | |||  ||||||||||||| | |||||||||||    
T  22520888 aaccctattttcacaaatttgtcgcttgcaaacttgatcttttctacctaggtttagcgcttgctaaccctacgcttcc 22520810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 433
Target Start/End: Original strand, 37189866 - 37189956
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtcaa 433  Q
    |||| ||||||||||| |||||||||||| ||||| |||||||| |||||  ||||| ||||||| | |||| ||||||||||| ||||||    
T  37189866 aaccctattttcacaagtttgtcgcttgcaaacttattcttttctatctagttttagagcttgctaaccctaagcttccgtactgcgtcaa 37189956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 30442450 - 30442514
Alignment:
Q  267 agttgtagcttaaaggcataacttttattcattcaataatattttagagagttttctcaatttct 331  Q
    ||||||||| |||||   || ||||| ||||||||||||||||||| ||||||||||||||||||    
T  30442450 agttgtagcctaaagaggtatcttttgttcattcaataatattttaaagagttttctcaatttct 30442514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 289 - 419
Target Start/End: Complemental strand, 31072271 - 31072134
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttt--- 385  Q
    |||||||| ||||||||| |||||||||||||||||| | || | ||||||   ||||| |||||||| || ||| || ||||| ||||| || |||       
T  31072271 ttttattccttcaataatgttttagagagttttctcagtgtcggttggattgcagaaccctattttcataagtttatctcttgcaaacttttttttttaa 31072172  T
Q  386 ----tcaatctaaatttagcgcttgctagcctacgctt 419  Q
        ||||||||  ||||||||||||||||||||||||    
T  31072171 tttctcaatctaggtttagcgcttgctagcctacgctt 31072134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 18180749 - 18180713
Alignment:
Q  396 tttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18180749 tttagcgcttgctagcctacgcttccgtactgcgtca 18180713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 10629265 - 10629211
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattc 340  Q
    ||||||||||| || |||||||||||||| | |||||||||||| ||||| ||||    
T  10629265 aacttttattcgttaaataatattttagaaaattttctcaatttttggtgaattc 10629211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 905 - 943
Target Start/End: Original strand, 26378504 - 26378541
Alignment:
Q  905 attgcggtggtgattcttcctcctcgatgtgactctctc 943  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  26378504 attgcggtggtgattcttc-tcctcgatgtgactctctc 26378541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 13991526 - 13991389
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| ||||||| ||  |||||||||||| |||||| |||||    
T  13991526 aacttttattcattcaataatattttagagagttttctcaaattctggtggattccagaaccttattttcgcatgtttgtcgcttgcaaacttgtttctt 13991427  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  13991426 ttcaatctagatttagcgcttgctagcctacgcttccg 13991389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 284 - 424
Target Start/End: Original strand, 40206088 - 40206229
Alignment:
Q  284 ataacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||||||||| |||| | |||  ||||||||||| ||||||||||||||||||||      
T  40206088 ataatttttattcattcaataatattttagagaatttttctcaatttctggtgaattccgaaacactattttcacaagtttgtcgcttgcgaacttgtct 40206187  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgta 424  Q
     ||||||| || ||||||||||||||||||||||||||||||    
T  40206188 ctttcaatttagatttagcgcttgctagcctacgcttccgta 40206229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 623 - 763
Target Start/End: Original strand, 20357031 - 20357170
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    ||||||||||||||| |||||||||||| ||  |||| |||||| | |||||||||||| ||| ||||||||||| |||||||||| |||||||| ||||    
T  20357031 tgtgtttggatagagcattttaatgagggaaagtaat-tttttgaaatatttaaattgacttgacccaaattccattgtttgggaaaatatttaactcat 20357129  T
Q  723 ttttaaaattcaaggcatttagataagaatttctctcttgc 763  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  20357130 ttttaaaattcaaggcatttagataagaatttttcttttgc 20357170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 623 - 763
Target Start/End: Complemental strand, 26439907 - 26439768
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    |||||||| |||||| |||||||||||||||| |||| ||||| ||| ||||||||||| ||| ||||||||| | ||||||| || |||||||||||||    
T  26439907 tgtgtttgaatagagtattttaatgaggaaatgtaat-tttttagagaatttaaattgacttgacccaaattctattgtttggaaaaatatttaagtcat 26439809  T
Q  723 ttttaaaattcaaggcatttagataagaatttctctcttgc 763  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  26439808 ttttaaaattcaaggcatttagataagaatttttcttttgc 26439768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 623 - 758
Target Start/End: Original strand, 1990838 - 1990972
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    |||||||||||| || |||||||||||| ||| |||| ||||||||| ||||||||||| ||| ||||||||| | |||||||||| |||||||||||||    
T  1990838 tgtgtttggataaagtattttaatgagggaatgtaat-tttttggagaatttaaattgacttgacccaaattctattgtttgggaaaatatttaagtcat 1990936  T
Q  723 ttttaaaattcaaggcatttagataagaatttctct 758  Q
    ||||||||||||| |||||| |||||||||||||||    
T  1990937 ttttaaaattcaaagcattttgataagaatttctct 1990972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 286 - 420
Target Start/End: Original strand, 7634022 - 7634157
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-ctt 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||| ||||| ||| ||| |||| |||||||| |||    
T  7634022 aacttttattcattcaataatattttagagagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttcctt 7634121  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    |||||||||  |||| ||||| ||||| ||||||||    
T  7634122 ttcaatctaggtttaacgcttactagcatacgcttc 7634157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 21433707 - 21433569
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-ttttc 387  Q
    |||||||||||||||||||||||||||| |||||||||||| || || ||||||||||| |||||||| || ||||||||||||||| |||||| |||||    
T  21433707 ttttattcattcaataatattttagagaattttctcaatttatgatgaattctggaaccctattttcataagtttgtcgcttgcgaatttgttctttttc 21433608  T
Q  388 aatctaaatttagcgcttgctagcctacgcttccgtact 426  Q
     |||||  |||||| |  ||||  |||||||||||||||    
T  21433607 tatctaggtttagcaccagctatactacgcttccgtact 21433569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 18689659 - 18689549
Alignment:
Q  295 tcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaac-ttgttcttttcaatcta 393  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||| |||||||| ||| ||| || ||||||||||||||    
T  18689659 tcattcaataatattttatagagttttctcaatttctggtggattctgcaaccctatttttacaagtttgtcgcatgcaaacttttttcttttcaatcta 18689560  T
Q  394 aatttagcgct 404  Q
      |||||||||    
T  18689559 ggtttagcgct 18689549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 289 - 393
Target Start/End: Original strand, 10494848 - 10494953
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttc 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  ||||||||||  |||||| ||||| |||||| ||||||||    
T  10494848 ttttattcattcaataatattttagagagttttctcaatttctggtgaattccggaactctattttcacaggtttgtcacttgcaaacttgtttcttttc 10494947  T
Q  388 aatcta 393  Q
     |||||    
T  10494948 catcta 10494953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 286 - 381
Target Start/End: Original strand, 9260515 - 9260610
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt 381  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||| ||||||| |||| ||||||||    
T  9260515 aactattattcattcaattatattttagatagttttctcaatttctggtggattctgaaaccctattttcgcaagtttgtcgtttgcaaacttgtt 9260610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 286 - 416
Target Start/End: Complemental strand, 22486921 - 22486792
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tt 384  Q
    |||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||| || ||||||||||| |||||| || ||    
T  22486921 aacttttatttattccataatgtttcagagagttttctcaatttctggtggattccggaacc-tattttcac-aagttgtcgcttgcaaacttggtcttt 22486824  T
Q  385 ttcaatctaaatttagcgcttgctagcctacg 416  Q
    ||| || ||  |||||||||||||||||||||    
T  22486823 ttctatataggtttagcgcttgctagcctacg 22486792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 13990823 - 13990729
Alignment:
Q  287 acttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt 381  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||  ||||| ||||||||||| |||||  ||||| ||||||||    
T  13990823 acttttattcattcaataatattttagagagttttttcaatttctgatggattccagaaccctattttcacaagtttgttacttgcaaacttgtt 13990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 6659419 - 6659331
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |||||||||| |||||    
T  6659419 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctagatttagcgcttgctaacctacacttccgtactgcgtca 6659331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 341 - 431
Target Start/End: Complemental strand, 7723754 - 7723665
Alignment:
Q  341 tggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtc 431  Q
    ||||||| ||||||||||| ||||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||    
T  7723754 tggaaccctattttcacaagtttgtagcttgcaaacttgttcttttcaatct-agtttagcgcttgctagcctacgcttctgtactgcgtc 7723665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 295 - 420
Target Start/End: Complemental strand, 18657180 - 18657054
Alignment:
Q  295 tcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaac-ttgttcttttcaatcta 393  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| || | |||||| |||| |||||||| ||| ||| || ||||||||||||||    
T  18657180 tcattcaataatattttatagagttttctcaatttccggtggattctgaaatcctatttttacaagtttgtcgcatgcaaacttttttcttttcaatcta 18657081  T
Q  394 aatttagcgcttgctagcctacgcttc 420  Q
      ||||| |||  ||||| ||||||||    
T  18657080 ggtttagtgctctctagcttacgcttc 18657054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 286 - 393
Target Start/End: Complemental strand, 38888137 - 38888029
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    |||||||||||||||||  |||||||||||| ||||||||||||||  ||||||| | |||| ||||||||||| |||||||||||| || ||| || ||    
T  38888137 aacttttattcattcaaccatattttagagaattttctcaatttctaatggattccgaaaccctattttcacaagtttgtcgcttgcaaatttgtttatt 38888038  T
Q  385 ttcaatcta 393  Q
    |||||||||    
T  38888037 ttcaatcta 38888029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 284 - 433
Target Start/End: Original strand, 19935426 - 19935576
Alignment:
Q  284 ataacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||||||||||||| |||||  ||||||||||| |||| |||||||| || || ||||   |||| |||||||| || |||||||||||| || || ||     
T  19935426 ataacttttattcaatcaatgttattttagagaatttttctcaatttttgatgaattccataaccctattttcataagtttgtcgcttgcaaatttattt 19935525  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtcaa 433  Q
    ||||| |||| | ||||||||| ||||||||||||||| ||||| ||||||    
T  19935526 ttttctatctgagtttagcgctggctagcctacgcttctgtactgcgtcaa 19935576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 300 - 408
Target Start/End: Original strand, 15848361 - 15848469
Alignment:
Q  300 caataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaatctaaattt 398  Q
    ||||| |||||||||||||||||||||||| |||||||||  |||||  | ||||||||| |||||| ||||| |||||| |||||||||||||| ||||    
T  15848361 caatagtattttagagagttttctcaatttttggtggatttcggaactctcttttcacaattttgtcacttgc-aacttgtttcttttcaatctagattt 15848459  T
Q  399 agcgcttgct 408  Q
    |||| |||||    
T  15848460 agcgtttgct 15848469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 327 - 432
Target Start/End: Original strand, 24667640 - 24667745
Alignment:
Q  327 tttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccgtact 426  Q
    ||||| |||||||| |||||| ||||||||||| ||||| || ||||| ||| |||||||| |||||  |||| ||||||||||||||||||||| ||||    
T  24667640 tttctagtggattccggaaccctattttcacaagtttgttgcctgcgagcttcttcttttctatctaggtttaacgcttgctagcctacgcttccatact 24667739  T
Q  427 acgtca 432  Q
     |||||    
T  24667740 gcgtca 24667745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 28897913 - 28897990
Alignment:
Q  287 acttttattcattcaataatattttagagagttttctcaa-tttctggtggattctggaaccatattttcacaaattt 363  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||  |||||||||||||||    
T  28897913 acttttattcattcaataatattttaaagacttttctcaattttctggtggattccggaacattattttcacaaattt 28897990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 314 - 422
Target Start/End: Complemental strand, 17255002 - 17254893
Alignment:
Q  314 agagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt-ttcaatctaaatttagcgcttgctagcc 412  Q
    |||||||||||||||||| | |||||   ||||  ||||||||||| |||||||||||  || |||||| | |||||||||| ||||||| |||||||||    
T  17255002 agagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcgtttgctagcc 17254903  T
Q  413 tacgcttccg 422  Q
    ||||||||||    
T  17254902 tacgcttccg 17254893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 314 - 426
Target Start/End: Complemental strand, 7724193 - 7724083
Alignment:
Q  314 agagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaatctaaatttagcgcttgctagcc 412  Q
    ||||||||||||||||||||||||||| |||||| |||||||   | ||||||||| || |||||| ||||||||||| ||  |||||| |||||||||     
T  7724193 agagttttctcaatttctggtggattccggaaccctattttc---agtttgtcgctcgcaaacttgcttcttttcaatataggtttagcacttgctagca 7724097  T
Q  413 tacgcttccgtact 426  Q
    |||| ||| |||||    
T  7724096 tacgtttctgtact 7724083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 289 - 406
Target Start/End: Original strand, 3675056 - 3675174
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttc 387  Q
    |||||||| |||||||| |||| |||||||||||| |||||||||||||||| | |||  || |||||   |||| ||| |||| |||||| ||||||||    
T  3675056 ttttattcgttcaataaaatttaagagagttttcttaatttctggtggattccgaaactttaatttcatggatttatcgtttgcaaacttgtttcttttc 3675155  T
Q  388 aatctaaatttagcgcttg 406  Q
    |||||| ||||||| ||||    
T  3675156 aatctatatttagcacttg 3675174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 634 - 715
Target Start/End: Original strand, 16878976 - 16879057
Alignment:
Q  634 agagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatattt 715  Q
    ||||||||||||||||| |||  ||| |||||||||||||| |||||| |||| |||||||| ||| |||||||| ||||||    
T  16878976 agagaattttaatgaggtaatgcaatctttttggagtatttgaattgacttggaccaaattctactctttgggaaaatattt 16879057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 53477353 - 53477261
Alignment:
Q  294 ttcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctttt 386  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||  ||||  |||||||||  |||| ||||||  |||||||| ||||    
T  53477353 ttcattcaatatatttttagagagttttctcaatttctggtggattctaaaaccccattttcacaggtttgacgcttgtaaacttgttttttt 53477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 50515978 - 50515896
Alignment:
Q  350 attttcacaaatttgtcgcttgcgaacttg-ttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    |||||||||| |||||||||||| |||||| ||||| ||| ||||| | |||||||||||||||| |||||||| |||||||||    
T  50515978 attttcacaagtttgtcgcttgcaaacttgtttcttctcagtctaagtgtagcgcttgctagcctccgcttccg-actacgtca 50515896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 340
Target Start/End: Complemental strand, 3765354 - 3765300
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattc 340  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||    
T  3765354 aacttttatttattcaataatatttttgagagttttctcaatttttggtgaattc 3765300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 7635235 - 7635269
Alignment:
Q  289 ttttattcattcaataatattttagagagttttct 323  Q
    |||||||||||||||||||||||||||||||||||    
T  7635235 ttttattcattcaataatattttagagagttttct 7635269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 17255045 - 17255007
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctc 324  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  17255045 aacttatattcattcaataatattttagagagttttctc 17255007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 50519272 - 50519224
Alignment:
Q  306 tattttagagagttttctcaatttctggtggattctggaaccatatttt 354  Q
    |||||||||||||||||||||||||| ||||||||  ||||| ||||||    
T  50519272 tattttagagagttttctcaatttctagtggattccagaaccctatttt 50519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 54700687 - 54700614
Alignment:
Q  343 gaaccatattttcacaaatttgtcgcttgcgaacttgtt-cttttcaatctaaatttagcgcttgctagcctac 415  Q
    ||||| |||| |||||| |||||| ||||| |||||||| ||||||||| ||  ||||||| ||||||||||||    
T  54700687 gaaccctattctcacaagtttgtcacttgcaaacttgtttcttttcaatataggtttagcgtttgctagcctac 54700614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 9e-45; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 623 - 763
Target Start/End: Original strand, 3297151 - 3297290
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    ||||||||||||||| |||||||||||| ||| |||| ||||||||| ||||||||||| ||| ||||||||||| |||||||||  |||||||||||||    
T  3297151 tgtgtttggatagagtattttaatgagggaatgtaat-tttttggagaatttaaattgacttgacccaaattccattgtttgggagaatatttaagtcat 3297249  T
Q  723 ttttaaaattcaaggcatttagataagaatttctctcttgc 763  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  3297250 ttttaaaattcaaggcatttagataagaatttctcttttgc 3297290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 623 - 763
Target Start/End: Complemental strand, 11004269 - 11004130
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    ||||||||||||||| |||||||||||| ||| |||| ||||||||| ||||||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  11004269 tgtgtttggatagagtattttaatgagggaatgtaat-tttttggagaatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtcat 11004171  T
Q  723 ttttaaaattcaaggcatttagataagaatttctctcttgc 763  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  11004170 tttttaaattcaaggcatttagataagaatttctcttttgc 11004130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 284 - 433
Target Start/End: Complemental strand, 2472838 - 2472688
Alignment:
Q  284 ataacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||| |||| |||||||      
T  2472838 ataacttttattcaatcaataatattttagtgagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcggttgcaaacttgtct 2472739  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtcaa 433  Q
     ||||||| ||  |||||||||||||||||||||||| |||||| ||||||    
T  2472738 ctttcaatttaggtttagcgcttgctagcctacgctttcgtactgcgtcaa 2472688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 292 - 421
Target Start/End: Complemental strand, 2107994 - 2107866
Alignment:
Q  292 tattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatc 391  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |||||| |||| ||||| |||||| ||| ||||  |||||||     
T  2107994 tattcattcaatagtattttagagagttttctcaatctctggtggattc-ggaaccttatttttacaagtttgttgcttgcaaacctgtttctttcaatt 2107896  T
Q  392 taaatttagcgcttgctagcctacgcttcc 421  Q
    || ||||| |||||||||||||| ||||||    
T  2107895 tagatttaacgcttgctagcctaagcttcc 2107866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 284 - 433
Target Start/End: Complemental strand, 365742 - 365592
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttttctcaattt-ctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||||||||||||| ||||||||||||  |||| ||||||| |||| |||||||||||  ||||| ||||||||||| ||||||||||| ||| |||||     
T  365742 ataacttttattcaatcaataatatttctgagacttttctctattttctggtggattcaagaaccctattttcacaagtttgtcgcttgggaatttgtta 365643  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtcaa 433  Q
    |||||  | ||  ||||||| ||||||||||||||||||||| | ||||||    
T  365642 ttttctttttaggtttagcgtttgctagcctacgcttccgtaatgcgtcaa 365592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 1320198 - 1320124
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcaca 358  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  1320198 ataacttttattcattcaataatattttagagaattttctctatttctggtggattctggaaccctattttcaca 1320124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 286 - 432
Target Start/End: Complemental strand, 8536520 - 8536369
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-----t 380  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| |||| | |||||||| || | |||| ||||| | ||||     |    
T  8536520 aacttttattcattagataatattttagagagtttcctcaatttctggtggattccggaatcctattttcaaaagtctgtcccttgcaaccttgattttt 8536421  T
Q  381 tcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    | ||||| |||||  |||||| ||||||||||||| ||||||||||| ||||    
T  8536420 ttttttctatctaggtttagcacttgctagcctacacttccgtactatgtca 8536369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 623 - 754
Target Start/End: Original strand, 43772920 - 43773049
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    ||||||||||||| ||| |||||  ||| ||| |||| |||| ||||||||| ||||||||||| | |||||| |||||||||||| |||||||| ||||    
T  43772920 tgtgtttggatagggaactttaactagggaatgtaatctttt-ggagtatttgaattgatttggactaaattc-actgtttgggaaaatatttaattcat 43773017  T
Q  723 ttttaaaattcaaggcatttagataagaattt 754  Q
    |||| |||||||||  ||||||||||||||||    
T  43773018 ttttgaaattcaagatatttagataagaattt 43773049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 344 - 434
Target Start/End: Complemental strand, 43304049 - 43303958
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcc-tacgcttccgtactacgtcaaa 434  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  |||||||||||||| || |||||||||||||| |||||||    
T  43304049 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccttacgcttccgtactgcgtcaaa 43303958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 41152493 - 41152577
Alignment:
Q  288 cttttattcattcaataatatttt-agagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttg 371  Q
    ||||||||||||| |||||||||| | |||||||||||||||| | |||||||||| |||  |||||||||||||||||||||||    
T  41152493 cttttattcattcgataatatttttaaagagttttctcaattttttgtggattctgaaacactattttcacaaatttgtcgcttg 41152577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 43306761 - 43306672
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| ||||| |||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  43306761 aaccctattttcacaagtttgttgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 43306672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 5128909 - 5128998
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  |||||||| |||| | |||||||||| ||||| |||||    
T  5128909 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcctgctaaccctacgcttctgtactgcgtca 5128998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 409
Target Start/End: Complemental strand, 45168434 - 45168343
Alignment:
Q  321 tctcaatttctggtggattctggaaccatat---tttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgcta 409  Q
    ||||||||||| ||||||||||||||| |||   |||||||| |||||||||||| ||||||||  ||||||||||  |||||| |||||||    
T  45168434 tctcaatttcttgtggattctggaaccctatatttttcacaagtttgtcgcttgcaaacttgtttatttcaatctaggtttagcacttgcta 45168343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 284 - 409
Target Start/End: Complemental strand, 5324778 - 5324655
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttttctcaa-tttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaact-tgtt 381  Q
    |||||||  |||||||||||||||||||  ||||||||||||| ||||||||||||||   | |  ||||||||||||||| |||||||| |||| | ||    
T  5324778 ataacttaaattcattcaataatattttcaagagttttctcaattttctggtggattc--catc--tattttcacaaatttatcgcttgcaaactctttt 5324683  T
Q  382 cttttcaatctaaatttagcgcttgcta 409  Q
    |||||||||| |  |||| |||||||||    
T  5324682 cttttcaatcaaggtttaacgcttgcta 5324655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 422
Target Start/End: Original strand, 52708798 - 52708923
Alignment:
Q  288 cttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tttt 386  Q
    ||||| || |||||||||||||||||||||||||||||||           ||||||||| || |||||||| ||| |||||||| || |||||| ||||    
T  52708798 cttttttttattcaataatattttagagagttttctcaat----------atctggaaccctactttcacaagtttatcgcttgcaaatttgttcttttt 52708887  T
Q  387 caatctaaatttagcgcttgctagcctacgcttccg 422  Q
    | |||||  ||||||||||| || ||||||||||||    
T  52708888 ctatctaggtttagcgcttgttaacctacgcttccg 52708923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 3063826 - 3063737
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| ||||  |||||||| |||||  |||| |||||||| | ||||||||| |||||| |||||    
T  3063826 aaccctattttcacaagtttgtcgcttgcaaactctttcttttctatctaggtttaacgcttgctaaccctacgctttcgtactgcgtca 3063737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 432
Target Start/End: Complemental strand, 3068940 - 3068875
Alignment:
Q  368 cttgcgaacttgttcttttcaatctaaatttagcgcttgctagcc-tacgcttccgtactacgtca 432  Q
    ||||| |||||||||||||| |||||  |||||||||||||| || |||||||||||||| |||||    
T  3068940 cttgcaaacttgttcttttctatctaggtttagcgcttgctaaccatacgcttccgtactgcgtca 3068875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 286 - 316
Target Start/End: Complemental strand, 20400762 - 20400732
Alignment:
Q  286 aacttttattcattcaataatattttagaga 316  Q
    |||||||||||||||||||||||||||||||    
T  20400762 aacttttattcattcaataatattttagaga 20400732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 33175832 - 33175914
Alignment:
Q  341 tggaaccatattttcacaaatttgtcgcttgcgaacttgt-tcttttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||| |||||||| || ||||||  |||| ||||||| |||||||||| ||  |||| || |||||||||||||||||||    
T  33175832 tggaaccctattttcataagtttgtcctttgcaaacttgtctcttttcaatataggtttatcgtttgctagcctacgcttccg 33175914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 9e-45; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 285 - 420
Target Start/End: Original strand, 23457587 - 23457723
Alignment:
Q  285 taacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttct 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||| |||||| || |    
T  23457587 taacttttattcattcaataatattttagagagttttctcaatttttggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttat 23457686  T
Q  384 tttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    ||||||||||  |||||||||||||||||||| ||||    
T  23457687 tttcaatctaggtttagcgcttgctagcctacacttc 23457723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 280 - 422
Target Start/End: Original strand, 12966412 - 12966555
Alignment:
Q  280 aggcataacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaactt 378  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||  |||||| ||||||||||| || |||||||||||||||    
T  12966412 aggcataacttttattcaatcaataatattttagagagtttttctcaatttttggtggatttcggaaccctattttcacaagttcgtcgcttgcgaactt 12966511  T
Q  379 gttcttttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||||||||||| ||||| || ||||||||||| |||||||    
T  12966512 gttcttttcaatctagatttaacgtttgctagcctatgcttccg 12966555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 286 - 432
Target Start/End: Original strand, 33051560 - 33051707
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tt 384  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||  ||||| |||||||| || |||||||||||| ||||||||| ||    
T  33051560 aacttatattcattcaataatattttagagagttttctcaatttctagtggattccagaaccctattttcaaaagtttgtcgcttgcaaacttgttcttt 33051659  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    |||||| ||  ||||||||||||||||||| |||||||||||||||||    
T  33051660 ttcaatttaggtttagcgcttgctagcctaagcttccgtactacgtca 33051707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 302 - 432
Target Start/End: Original strand, 15129347 - 15129478
Alignment:
Q  302 ataatattttagagagttttctcaattt-ctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttag 400  Q
    ||||||||| ||||| ||||||| |||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||  |||||    
T  15129347 ataatatttcagagacttttctctattttctggttgattctggaaccctattttcacaagtttgtcgcttgcgaacttgttcttttctatctaggtttag 15129446  T
Q  401 cgcttgctagcctacgcttccgtactacgtca 432  Q
    ||||||||||||||||||||||||||||||||    
T  15129447 cgcttgctagcctacgcttccgtactacgtca 15129478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 289 - 421
Target Start/End: Complemental strand, 5171729 - 5171596
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tcttttc 387  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |||| |||||||||||| ||||||| |||||||    
T  5171729 ttttattcattaaataatattttagagagttttctcaatttctagtggattcttgaaccctatttttacaagtttgtcgcttgcaaacttgtctcttttc 5171630  T
Q  388 aatctaaatttagcgcttgctagcctacgcttcc 421  Q
    |||||| |||||||||||| || |||||||||||    
T  5171629 aatctagatttagcgcttgttaacctacgcttcc 5171596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 285 - 424
Target Start/End: Original strand, 4184869 - 4185010
Alignment:
Q  285 taacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaactt-gttc 382  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |||| ||||||||||| ||||||||||||||||||  |||    
T  4184869 taacttttattcattcaataatattttagagagtttttctcaatttctcgtggattccgaaaccctattttcacaagtttgtcgcttgcgaacttatttc 4184968  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgta 424  Q
    |||| |||||| ||||||  |||| |||||||||||||||||    
T  4184969 ttttgaatctatatttagtacttgttagcctacgcttccgta 4185010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 280 - 432
Target Start/End: Original strand, 36647228 - 36647381
Alignment:
Q  280 aggcataacttttattcattcaataatattttagagagttttc-tcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaactt 378  Q
    |||||||||||||||||| ||||||||| |||||||  ||||| ||| ||| ||||||||||   |||| ||||||||||| |||||||||||| |||||    
T  36647228 aggcataacttttattcaatcaataatactttagagttttttcctcattttttggtggattccaaaaccctattttcacaagtttgtcgcttgcaaactt 36647327  T
Q  379 gttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||| |||||    
T  36647328 gttcttttcaatcgaggtttagcgcttgctagcctacgcttccgtactgcgtca 36647381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 267 - 421
Target Start/End: Original strand, 21772298 - 21772452
Alignment:
Q  267 agttgtagcttaaaggcataacttttattcattcaataatatttta-gagagttttctcaatttctggtggattctggaaccatattttcacaaatttgt 365  Q
    |||||||||||||  | ||||||||||||| ||||||||||||| | ||||||||||||||||| || ||||||| |||||| |||||||| || |||||    
T  21772298 agttgtagcttaagag-ataacttttattcgttcaataatatttcaagagagttttctcaatttgtgatggattcaggaaccctattttcataagtttgt 21772396  T
Q  366 cgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttcc 421  Q
    ||||||| |||||||| |||||||||||| ||||||| | |||| |||||||||||    
T  21772397 cgcttgcaaacttgtttttttcaatctaagtttagcgttggctaacctacgcttcc 21772452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 289 - 416
Target Start/End: Original strand, 28737782 - 28737910
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaa-atttgtcgcttgcgaacttgttcttttc 387  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||  |||||||||||  |||||| ||||| |||||  |||||||    
T  28737782 ttttattcattcaataatattttagagagttttctcaatttctgttggattctgaaactctattttcacaagttttgtctcttgcaaacttactcttttc 28737881  T
Q  388 aatctaaatttagcgcttgctagcctacg 416  Q
    ||| ||  |||||||||||||||||||||    
T  28737882 aatttaggtttagcgcttgctagcctacg 28737910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 661 - 763
Target Start/End: Original strand, 1499640 - 1499742
Alignment:
Q  661 tttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcatttttaaaattcaaggcatttagataagaatttctctct 760  Q
    |||||||| |||||||||||| |||| ||||||| ||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  1499640 tttttggactatttaaattgacttggaccaaatttcactgtttgagaaaatatttaagtcattcctaaaattcaaggcatttagataagaatttctctct 1499739  T
Q  761 tgc 763  Q
    |||    
T  1499740 tgc 1499742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 631 - 763
Target Start/End: Complemental strand, 1500845 - 1500714
Alignment:
Q  631 gatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcatttttaaaa 730  Q
    ||||| |||||||||||||  ||| |||| |||| | |||||||||||||| |||  ||||||| ||||||||| |||  ||||||||||||||||||||    
T  1500845 gatagtgaattttaatgagagaatgtaat-ttttcgaagtatttaaattgacttgaaccaaatttcactgtttgagaaagtatttaagtcatttttaaaa 1500747  T
Q  731 ttcaaggcatttagataagaatttctctcttgc 763  Q
    || ||||||||||||||||||||| ||||||||    
T  1500746 tttaaggcatttagataagaatttttctcttgc 1500714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 284 - 432
Target Start/End: Original strand, 1518130 - 1518281
Alignment:
Q  284 ataacttttattcattcaataatattttagagagtttt---ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt 380  Q
    ||||||| |||||| | |||||||||||||| ||||||   |||||||||| |||||||  |||||| |||||||| || || |||||||||||||||||    
T  1518130 ataacttatattcaataaataatattttagaaagtttttttctcaatttctagtggatttcggaaccctattttcataagttcgtcgcttgcgaacttgt 1518229  T
Q  381 tcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
     | ||||||||||  || ||||||||||||  |||||||||||||| |||||    
T  1518230 ccctttcaatctaggttaagcgcttgctaggatacgcttccgtactgcgtca 1518281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 286 - 420
Target Start/End: Complemental strand, 32163919 - 32163783
Alignment:
Q  286 aacttttattcattcaataatattttagag-agttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaactt-gttct 383  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |  ||||||| | |||||||||||||||| |||| ||||| | |||||  ||||    
T  32163919 aacttttattcattcaataatattttagagaagttttctcaatttatcatggattccgaaaccatattttcacaagtttgacgcttacaaacttatttct 32163820  T
Q  384 tttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    ||||||||||  |||| ||||| ||||||| ||||||    
T  32163819 tttcaatctaggtttaacgctttctagccttcgcttc 32163783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 36615144 - 36615243
Alignment:
Q  280 aggcataacttttattcattcaataatattttagagag--ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaact 377  Q
    |||||||||||||||||| |||||||||||||||||||  |||||| |||||||||||||||| |||||| |||||| |||| |||||||||||| ||||    
T  36615144 aggcataacttttattcaatcaataatattttagagagttttttcttaatttctggtggattccggaaccttatttttacaattttgtcgcttgcaaact 36615243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 288 - 413
Target Start/End: Complemental strand, 32162115 - 32161988
Alignment:
Q  288 cttttattcattcaataatattttagaga-gttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttt 385  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||  ||||| ||||||||||| |||||| ||||| |||||| ||||||    
T  32162115 cttttatttattcaataatattttagagaagttttctcagtttctggtggattcctgaaccctattttcacaagtttgtcacttgcaaacttgtttcttt 32162016  T
Q  386 tcaatctaaatttagcgcttgctagcct 413  Q
    || |||||  |||| |||||||| ||||    
T  32162015 tcgatctaggtttaacgcttgcttgcct 32161988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 8294522 - 8294657
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt- 384  Q
    |||||||||||| | |||||||||||||||  |||| ||||||||||||||||| || |||  |||||| |||| |||||||||||| ||| |||||||     
T  8294522 aacttttattcaatgaataatattttagag--ttttttcaatttctggtggattatgaaacactatttttacaagtttgtcgcttgcaaacgtgttcttc 8294619  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||| |||||| |||||| |||||||||||| |||||||    
T  8294620 ttctatctaagtttagcacttgctagcctatgcttccg 8294657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 36648901 - 36649001
Alignment:
Q  280 aggcataacttttattcattcaataatattttagagag--ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaact 377  Q
    |||||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||  ||||| |||||| |||| |||||||||||| ||||    
T  36648901 aggcataacttttattcaatcaataatattttagagagttttttcttaatttctggtggattccagaaccctatttttacaattttgtcgcttgcaaact 36649000  T
Q  378 t 378  Q
    |    
T  36649001 t 36649001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 286 - 405
Target Start/End: Original strand, 33053359 - 33053479
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tt 384  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||    ||||  ||||||| || |||||||||| | ||||| ||| ||    
T  33053359 aacttttattcattcaataatattttagaggattttctcaatttctggtagatttcataacccgattttcataattttgtcgcttacaaacttattcttt 33053458  T
Q  385 ttcaatctaaatttagcgctt 405  Q
    ||||||||| |||||||||||    
T  33053459 ttcaatctagatttagcgctt 33053479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 286 - 400
Target Start/End: Complemental strand, 1218434 - 1218319
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tt 384  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  | |||| || ||   ||||||||||||||||||| || | ||||| ||| ||    
T  1218434 aacttttattcattcaataatattttagagaattttctcaatttctaatagattatgaaattctattttcacaaatttgtcgtttacaaacttattcttt 1218335  T
Q  385 ttcaatctaaatttag 400  Q
    |||||||||| |||||    
T  1218334 ttcaatctaagtttag 1218319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 344 - 433
Target Start/End: Complemental strand, 27952407 - 27952317
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtcaa 433  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| ||||||    
T  27952407 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcaa 27952317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 31636337 - 31636426
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||||||||||||||| |||||||||||| |||| ||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  31636337 aaccatattttcacaagtttgtcgcttgcaaactagttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 31636426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 289 - 414
Target Start/End: Original strand, 18945905 - 18946031
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaactt-gttcttttc 387  Q
    |||| ||||||||||||||||||||||| |||| | ||||||||||| |||| |||||  | || |||||| |||||||||||| || ||  ||||| ||    
T  18945905 ttttgttcattcaataatattttagagaattttattaatttctggtgaattccggaactctgttctcacaagtttgtcgcttgcaaatttatttcttctc 18946004  T
Q  388 aatctaaatttagcgcttgctagccta 414  Q
    ||||||  |||||||||||||| ||||    
T  18946005 aatctacgtttagcgcttgctaaccta 18946031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 12124035 - 12123950
Alignment:
Q  294 ttcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg 379  Q
    ||||||| |||| |||| ||||| |||||||||||| ||||||||||  ||||||||||||||||  |||||||||||| ||||||    
T  12124035 ttcattctataaaatttcagagatttttctcaatttttggtggattcctgaaccatattttcacaggtttgtcgcttgcaaacttg 12123950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 22011436 - 22011525
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||| ||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  22011436 aaccctattttcacaagtttgtcacttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 22011525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 2155972 - 2156056
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    ||||||||||| ||||||||| || |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  2155972 tattttcacaagtttgtcgctcgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 2156056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 33655628 - 33655716
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||  ||||| |||||  |||||||||||||| ||||| |||||||||| |||||    
T  33655628 aaccctattttcacaagtttgtcgcttgcaaacttgtatttttctatctaggtttagcgcttgctaacctacacttccgtactgcgtca 33655716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 23457362 - 23457446
Alignment:
Q  62 tcttgttcattggaagattcaacatgcatcagaatgagaatttggggtctgagttcttca-aagtggaggagattgatgtaggagg 146  Q
    ||||||||||||||| ||||||||||||||||||||||||  | ||||| |||||||||| | ||||||| || ||||||||||||    
T  23457362 tcttgttcattggaatattcaacatgcatcagaatgagaa-ctcgggtcagagttcttcagaggtggaggcgactgatgtaggagg 23457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 27956243 - 27956154
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| |||||||| |  |||||||||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  27956243 aaccctattttcataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 27956154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 28737911 - 28737984
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||||||| || |||||||||||| |||||| |||||||||||||  |||||| |||||||| |||||||||||    
T  28737911 tattttcaaaagtttgtcgcttgcaaacttgctcttttcaatctaggtttagcacttgctagactacgcttccg 28737984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 31634109 - 31634193
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    ||||||||||| ||||||||| || |||||||||||||| |||||  ||||||| ||||| | |||||||||||||||| |||||    
T  31634109 tattttcacaagtttgtcgctagcaaacttgttcttttctatctaggtttagcgtttgctaaccctacgcttccgtactgcgtca 31634193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 19582063 - 19582132
Alignment:
Q  297 attcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtc 366  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||  ||||| | |||||||| |||||||    
T  19582063 attcaataatattttagagagttttttcaatttctagtgaattcgagaacccttttttcacagatttgtc 19582132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 23456533 - 23456622
Alignment:
Q  302 ataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaat 390  Q
    ||||||||| | |||||||||||| |||| |||||||||  ||||  |||||||| || |||||||||||| |||||| |||||||||||    
T  23456533 ataatatttcaaagagttttctcagtttccggtggattccagaactttattttcaaaagtttgtcgcttgcaaacttgtttcttttcaat 23456622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 280146 - 280076
Alignment:
Q  290 tttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaa 360  Q
    |||||| ||||||| |||||||| ||||||||||||||||  | |||||||  ||||| ||||||||||||    
T  280146 tttattaattcaatgatattttaaagagttttctcaattttcgatggattcaagaaccttattttcacaaa 280076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 9e-45; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 623 - 763
Target Start/End: Complemental strand, 9022382 - 9022243
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcat 722  Q
    |||||||||||| || |||||||||||| ||  |||| ||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||||||    
T  9022382 tgtgtttggataaagcattttaatgagggaaagtaat-tttttggagtatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtcat 9022284  T
Q  723 ttttaaaattcaaggcatttagataagaatttctctcttgc 763  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  9022283 ttttaaaattcaaggcatttagataagaatttctcttttgc 9022243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 284 - 435
Target Start/End: Original strand, 31915489 - 31915641
Alignment:
Q  284 ataacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||||||||||||| ||| || |||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||||     
T  31915489 ataacttttattcaatcagtagtattttagagagtttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgttt 31915588  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtcaaac 435  Q
     |||||| |||| ||||| |||||||||||| |||||||||||||||||||||    
T  31915589 ctttcaacctaagtttagtgcttgctagcctgcgcttccgtactacgtcaaac 31915641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 286 - 419
Target Start/End: Original strand, 12944058 - 12944192
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||| |||| ||||||| |||| |||||| |||||    
T  12944058 aacttttattcattcaatattattttagagagttttctcaatttctggtggattccagaaccctatttttacaagtttgtcgtttgcaaacttgtttctt 12944157  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgctt 419  Q
    ||||||||| |||||||||||||||||||||||||    
T  12944158 ttcaatctagatttagcgcttgctagcctacgctt 12944192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 50713658 - 50713792
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tcttttc 387  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  50713658 ttttattcattcaataatatttttgagagttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgcctgcgaacttgtctcttttc 50713757  T
Q  388 aatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||  ||||||| ||| ||||||||| |||||    
T  50713758 aatctaggtttagcggttgttagcctacgtttccg 50713792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 285 - 422
Target Start/End: Original strand, 239628 - 239766
Alignment:
Q  285 taacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttct 383  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||| | ||||||| |||||| |||||||| ||||||| ||||||| |||||| ||||    
T  239628 taacttttattcatttaataatattttagagggttttcttaatttcagttggattccggaaccctattttcataaatttgacgcttgctaacttgtttct 239727  T
Q  384 tttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||| ||| ||| |||||| ||||||||||||||||||||    
T  239728 ttttaatataagtttagcccttgctagcctacgcttccg 239766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 10925682 - 10925816
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttt 385  Q
    |||||||||||||||||||||||||||||||||||| |||||||  |||||||||  |||||||||||| |||| |||||||||||| || ||||  |||    
T  10925682 aacttttattcattcaataatattttagagagttttttcaattttcggtggattccagaaccatatttttacaagtttgtcgcttgcaaaattgt--ttt 10925779  T
Q  386 tcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||| ||  |||||||||||||||||| ||||||||    
T  10925780 tcaatttaggtttagcgcttgctagcctccgcttccg 10925816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 286 - 413
Target Start/End: Original strand, 10927136 - 10927262
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tt 384  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||| |||||||||||| ||||||||| ||    
T  10927136 aacttttattcattaaataatattttagagagttttctcaatttctggtggattccggaacc--cttttcacaagtttgtcgcttgcaaacttgttcttt 10927233  T
Q  385 ttcaatctaaatttagcgcttgctagcct 413  Q
    |||| ||||  ||||||| ||||||||||    
T  10927234 ttcagtctaggtttagcgtttgctagcct 10927262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 286 - 432
Target Start/End: Complemental strand, 28660894 - 28660747
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaa-tttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttct 383  Q
    |||||||||| ||||||||||||||||||||||||||| || |||||||||||||  |||||| ||||||||||| |||||||||||| |||||| ||||    
T  28660894 aacttttattaattcaataatattttagagagttttctaaattttctggtggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgtttct 28660795  T
Q  384 tttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    | || |||||  ||||||| |||||| |||||||||||| |||||||||    
T  28660794 tatctatctaggtttagcgtttgctatcctacgcttccg-actacgtca 28660747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 267 - 422
Target Start/End: Original strand, 23987494 - 23987655
Alignment:
Q  267 agttgtagcttaa-aggcataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaacc----atattttcacaaat 361  Q
    ||||||||| ||| || ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||    |||||||||||| |    
T  23987494 agttgtagcgtaagagacataaattttattcaatcaataatattttagagagttatctcaatttctggtggattccggaaccttctatattttcacaagt 23987593  T
Q  362 ttgtcgcttgcgaacttgttc-ttttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||||| |||| || |||||| ||||| |||||  || ||||||||||| ||||||||||||    
T  23987594 ttgtcgtttgcaaagttgttctttttctatctaggttcagcgcttgctaccctacgcttccg 23987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 285 - 416
Target Start/End: Original strand, 43681400 - 43681535
Alignment:
Q  285 taacttttattcattcaataatatttta-gaga-gttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg--t 380  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||| |  |||||||||||||||||||||||| ||||||  |    
T  43681400 taacttttattcattcaataatattttaagagaagttttcttaatttctggtagattctggatctctattttcacaaatttgtcgcttgcaaacttgttt 43681499  T
Q  381 tcttttcaatctaaatttagcgcttgctagcctacg 416  Q
    | |||||||||||  |||||||||||||||| ||||    
T  43681500 ttttttcaatctaggtttagcgcttgctagcatacg 43681535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 9030958 - 9031096
Alignment:
Q  286 aacttttattcattcaataatattttagag-agttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-ct 383  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||  |||| |||||||| || ||| | |||||| ||||| || ||    
T  9030958 aacttttattcattcaataatattttagagaagttttctcaatttatggtggattctacaaccctattttcataagtttattgcttgcaaacttattcct 9031057  T
Q  384 tttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||| ||  |||||  ||||||||||||||||||||    
T  9031058 tttcaatataggtttagtacttgctagcctacgcttccg 9031096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 8221430 - 8221567
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tctt 384  Q
    |||||||||||||||||| |||||| | |||||||||||||||||||||||||||  ||||| |||||||| || ||||||| |||| ||||||| |||     
T  8221430 aacttttattcattcaatgatatttcaaagagttttctcaatttctggtggattccagaaccctattttcataagtttgtcgtttgcaaacttgtctcta 8221529  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||||   |||||| || |||||||||||| ||||    
T  8221530 ttcaatcttggtttagcactagctagcctacgcatccg 8221567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 294 - 421
Target Start/End: Original strand, 10928239 - 10928367
Alignment:
Q  294 ttcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tcttttcaatct 392  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||| | |||| ||||||||||| |||||| ||| | ||||| | |||||| |||||    
T  10928239 ttcattcaatagtattttagagagttttctcaatttatagtggattccgaaaccttattttcacaagtttgtcacttacaaacttatatctttttaatct 10928338  T
Q  393 aaatttagcgcttgctagcctacgcttcc 421  Q
    |  |||||| |||||||||||||||||||    
T  10928339 aggtttagcacttgctagcctacgcttcc 10928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 293 - 387
Target Start/End: Complemental strand, 8967944 - 8967850
Alignment:
Q  293 attcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttc 387  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||||||| |  ||||||  |||| ||||||||||||||    
T  8967944 attcattcaataatatttcagagagttttcacaatttttggtggattctggaaccctattttcataggtttgtcatttgcaaacttgttcttttc 8967850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 9195088 - 9194994
Alignment:
Q  287 acttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt 381  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| | ||||| ||||  ||||  |||||||||||| ||||||||    
T  9195088 acttttattcattcaataatactttagagagttttttcaatttttggtggattattgaaccctattaacacatgtttgtcgcttgcaaacttgtt 9194994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 28661214 - 28661078
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    ||||||||| | ||||| ||||||||||||||||||||| |||| | ||||||| || |||| |||||| |||  ||| |||||||| |||||| |||||    
T  28661214 aacttttatccgttcaacaatattttagagagttttctc-attttttgtggattttgaaaccctatttttacaggtttttcgcttgcaaacttgtttctt 28661116  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
     ||||| ||  |||||| ||||||||||||||||||||    
T  28661115 atcaatttaggtttagcacttgctagcctacgcttccg 28661078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 344 - 434
Target Start/End: Original strand, 8931220 - 8931311
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtcaaa 434  Q
    |||| ||||||||||| ||| |||||||| |||||||| |||||||||||  ||||||||||||| | |||||||||||||||| |||||||    
T  8931220 aaccctattttcacaagtttatcgcttgcaaacttgtttttttcaatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcaaa 8931311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 393
Target Start/End: Complemental strand, 33152863 - 33152758
Alignment:
Q  291 ttattcattcaataatattttagagagttttctc--aatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttc 387  Q
    ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||| |||| ||  || |||||||||||| |||||| ||||||||    
T  33152863 ttattcaatcaataatattttatagagttttttcttaatttctggtggattccggaaccctattgtcgtaagtttgtcgcttgcaaacttgtttcttttc 33152764  T
Q  388 aatcta 393  Q
    ||||||    
T  33152763 aatcta 33152758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 344 - 434
Target Start/End: Complemental strand, 50857533 - 50857442
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtcaaa 434  Q
    |||| ||||||||||| |||||||||| | ||||| |||||||| |||||  ||||||||||||| | |||||||||||||||| |||||||    
T  50857533 aaccctattttcacaagtttgtcgcttacaaacttattcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtcaaa 50857442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 326 - 420
Target Start/End: Original strand, 31913359 - 31913453
Alignment:
Q  326 atttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    ||||||||||||||  |||| | |||||| |||| |||||||||||| ||||||||  |||||| |||  ||||||||||||||||||| |||||    
T  31913359 atttctggtggatttcggaaacctatttttacaagtttgtcgcttgcaaacttgtttctttcaacctaggtttagcgcttgctagcctatgcttc 31913453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 36694270 - 36694153
Alignment:
Q  316 agttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctac 415  Q
    ||||||||||||||||| ||||||| | |||| |||||||| |||||   || || |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  36694270 agttttctcaatttctgatggattccgcaaccctattttcataaattcaccgtttacgaatttgtctctttcaatctaagtttagcgcttgctagtctac 36694171  T
Q  416 gcttccgtactacgtcaa 433  Q
      ||||||||| ||||||    
T  36694170 aattccgtactgcgtcaa 36694153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 36710371 - 36710254
Alignment:
Q  316 agttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctac 415  Q
    ||||||||||||||||| ||||||| | |||| |||||||| |||||   || || |||| ||||   ||||||||||| ||||||||||||||| ||||    
T  36710371 agttttctcaatttctgatggattccgcaaccctattttcataaattcaccgtttacgaatttgtctctttcaatctaagtttagcgcttgctagtctac 36710272  T
Q  416 gcttccgtactacgtcaa 433  Q
      ||||||||| ||||||    
T  36710271 aattccgtactgcgtcaa 36710254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 425
Target Start/End: Complemental strand, 40058255 - 40058109
Alignment:
Q  278 aaaggcataacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatatttt-cacaaatttgtcgcttgcgaa 375  Q
    ||||||||||||||||||||    |||||||||||  ||||||| |||||||  |||| ||||||| |||| |||||| || || |||||||||||| ||    
T  40058255 aaaggcataacttttattca----ataatattttatggagtttttctcaattgttggttgattctgaaaccctatttttcataagtttgtcgcttgcaaa 40058160  T
Q  376 cttgtt-cttttcaatctaaatttagcgcttgctagcctacgcttccgtac 425  Q
    ||| || |||||| || ||  ||||  ||||||||||||||||||||||||    
T  40058159 cttatttcttttctatttaggtttactgcttgctagcctacgcttccgtac 40058109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 9199362 - 9199312
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtgg 336  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||    
T  9199362 aacttttattctttcaataatattttagagagttttttcaatttcttgtgg 9199312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 422
Target Start/End: Original strand, 21903709 - 21903830
Alignment:
Q  301 aataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaactt-gttcttttcaatctaaattta 399  Q
    ||||||| |||||| |||||||||||||| | |||||||| | |||| ||||||||| || ||||||| | | |||||  ||||||||||||||| ||||    
T  21903709 aataatagtttagaaagttttctcaattttttgtggattccgaaaccctattttcac-aagttgtcgcctacaaacttatttcttttcaatctaagttta 21903807  T
Q  400 gcgcttgctagcctacgcttccg 422  Q
    ||||||  || ||||| ||||||    
T  21903808 gcgcttattaacctactcttccg 21903830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 13444072 - 13444015
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttg 406  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||  ||||| |||||    
T  13444072 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagtgcttg 13444015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 420
Target Start/End: Complemental strand, 28659704 - 28659577
Alignment:
Q  296 cattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttt---tcaatct 392  Q
    |||||||||||| ||||||||||||| | ||||||| ||||||   |||| |  |||||||||| ||| || ||||| |||||||| |||   ||||| |    
T  28659704 cattcaataatactttagagagtttttttaatttctagtggatatcggaatccaattttcacaagtttatcccttgcaaacttgttttttttatcaatat 28659605  T
Q  393 aaatttagcgcttgctagcctacgcttc 420  Q
    |  ||||||  |||||||||||||||||    
T  28659604 aggtttagcatttgctagcctacgcttc 28659577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 26981450 - 26981589
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctc----aatttctggtggattctggaaccatat--tttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||||||| | ||||| |||||||||||||||| |     |||||||| ||||||  | ||||||||  ||| |||| ||| |||||||| ||||||||     
T  26981450 ttttattcctccaatagtattttagagagtttttttttttaatttctgatggatttcgaaaccatatatttttacaagtttttcgcttgcaaacttgttt 26981549  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
     |||||||||| ||||||| || | || ||||||||||||    
T  26981550 ctttcaatctagatttagccctagataacctacgcttccg 26981589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 13441673 - 13441612
Alignment:
Q  366 cgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcc-tacgcttccgtact 426  Q
    ||||||| || ||||||||||| |||||| |||||||||||||| || ||| ||||||||||    
T  13441673 cgcttgcaaaattgttcttttctatctaagtttagcgcttgctaaccatactcttccgtact 13441612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 291 - 422
Target Start/End: Complemental strand, 11000968 - 11000836
Alignment:
Q  291 ttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaa 389  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||  ||||| ||||||||| | ||||||||||||||||||| ||||||||||    
T  11000968 ttattcattcaataatattttagagagttttcccaatttctggtggattcctgaaccctattttcactagtttgtcgcttgcgaacttgtttcttttcaa 11000869  T
Q  390 tctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||  |||||||||||||||||||| ||||||    
T  11000868 tctaggtttagcgcttgctagcctacacttccg 11000836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 286 - 427
Target Start/End: Original strand, 1365613 - 1365755
Alignment:
Q  286 aacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt 384  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||| ||  |||||| | ||||||||| |    
T  1365613 aacttttattcattcaataatattttagagagtttttctcaatttttggtggattatggaaccctattttcacaagttcatcgcttacaaacttgttcct 1365712  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccgtacta 427  Q
    |||||||||  |||||||||||||||||||  |||||||||||    
T  1365713 ttcaatctaggtttagcgcttgctagcctatccttccgtacta 1365755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 1369747 - 1369884
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||| ||| |||||||| |||||| |||||    
T  1369747 aacttttattaattcaataatattttatagagttttctcaatttctggtggattccggaaccctattttaacaagtttatcgcttgcaaacttgtttctt 1369846  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||||||||  |||| ||||||||||||| ||||||||    
T  1369847 ttcaatctaggtttaacgcttgctagcctccgcttccg 1369884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 5934549 - 5934681
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttc 387  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||||||| || | ||||||||||| |||||||||||| || ||| ||||||||    
T  5934549 ttttattcattcaataatattttagagaattttctcaatttctaatggattctgaaatcctattttcacaagtttgtcgcttgcaaatttgtttcttttc 5934648  T
Q  388 aatctaaatttagcgcttgctagcctacgcttc 420  Q
    ||||||  |||||||||||||||||||||||||    
T  5934649 aatctaggtttagcgcttgctagcctacgcttc 5934681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 284 - 433
Target Start/End: Complemental strand, 4888835 - 4888685
Alignment:
Q  284 ataacttttattcattcaataatattttagagagt-tttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |||| |||||  ||||||||||  |||||||||||| |||||||||    
T  4888835 ataacttttattcaatcaataatattttagagagtgtttttcaatttctggtgaattccggaactctattttcacaggtttgtcgcttgcaaacttgttc 4888736  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtcaa 433  Q
    ||||| |||||  || ||||| |||||||||||||||||||| | ||||||    
T  4888735 ttttctatctaggttcagcgcatgctagcctacgcttccgtattgcgtcaa 4888685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 284 - 421
Target Start/End: Complemental strand, 3778863 - 3778720
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttt------tctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaact 377  Q
    |||||||||||||| ||||||||||||||||||||||      |||||||||||||||||||| |||||| ||||||||||| ||| |||||||| ||||    
T  3778863 ataacttttattcaatcaataatattttagagagtttaatttttctcaatttctggtggattccggaaccctattttcacaagtttctcgcttgcaaact 3778764  T
Q  378 tgttcttttcaatctaaatttagcgcttgctagcctacgcttcc 421  Q
    ||||| |||||||||| |||||| |||||  |||||||||||||    
T  3778763 tgttcatttcaatctatatttagtgcttgtcagcctacgcttcc 3778720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 286 - 393
Target Start/End: Original strand, 24840085 - 24840193
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||| |||||    
T  24840085 aacttttatttattgaataatattttagagagttttctcaatttctggtggattccggaaccctattttcacaagtttgtcgcttgcaaacttgtttctt 24840184  T
Q  385 ttcaatcta 393  Q
    |||||||||    
T  24840185 ttcaatcta 24840193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 284 - 420
Target Start/End: Original strand, 30217753 - 30217890
Alignment:
Q  284 ataacttttattcattcaataatattttagagagtttt--ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt 381  Q
    |||||||||||||| |||||||||||||||||||| ||  ||||||| ||||||||||   ||||  ||||||||||| |||||||||||||||||||||    
T  30217753 ataacttttattcaatcaataatattttagagagtgttatctcaattactggtggatttcagaactctattttcacaagtttgtcgcttgcgaacttgtt 30217852  T
Q  382 cttttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    | ||||||||||  |||||||||||||||||||||||||    
T  30217853 c-tttcaatctaggtttagcgcttgctagcctacgcttc 30217890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 286 - 408
Target Start/End: Original strand, 11228923 - 11229046
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tt 384  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||  |||||||| ||| ||||||||| ||    
T  11228923 aacttttattcactcaataatattttagagagttttatcaatttctggtggattctggaacccttttttcacacgtttgtcgcctgcaaacttgttcttt 11229022  T
Q  385 ttcaatctaaatttagcgcttgct 408  Q
    |||||||||  |||||| ||||||    
T  11229023 ttcaatctaggtttagcacttgct 11229046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 6451897 - 6451760
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    |||||| ||||||||||||||||||||||||||||| ||||||| || ||||||| | |||| ||||||||||  |||||||||||| |||||| ||| |    
T  6451897 aactttaattcattcaataatattttagagagttttttcaatttttgttggattccgaaaccttattttcacaggtttgtcgcttgcaaacttgtttcct 6451798  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||||| |||||||||||| |||| | ||||||||    
T  6451797 ttcaatctagatttagcgcttgatagctttcgcttccg 6451760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 27142608 - 27142745
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||||| |||||| |||||    
T  27142608 aacttttattaattgaataatatttcagagagttttctcaatttctggtggtttcaggaaccctattttcacaagtttgtcgcttgcaaacttgtttctt 27142707  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||||||||  |||| |  ||||||| |||||| ||||    
T  27142708 ttcaatctaggtttaaccattgctaggctacgcatccg 27142745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 286 - 420
Target Start/End: Complemental strand, 8916524 - 8916389
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-tt 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||| ||||| ||| ||| |||| ||||||||| ||    
T  8916524 aacttttattcattcaataatattttagagagttttctcaatttctggtggattccagaactctatttccacaagtttatcgtttgcaaacttgttcatt 8916425  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    || ||||||  |||| ||||| ||||| ||||||||    
T  8916424 ttaaatctaggtttaacgcttactagcatacgcttc 8916389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 1786625 - 1786763
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-ctt 384  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||  |||||||||||| ||||||||  ||    
T  1786625 aacttttattcattaaataatattttagagagttttcgcaatttctgatggattctggaaccctattttcgcatgtttgtcgcttgcaaacttgttattt 1786724  T
Q  385 ttcaatctaaatttagcgcttgct-agcctacgcttccg 422  Q
    ||| |||||  |||||| |||||| | ||||||||||||    
T  1786725 ttctatctaggtttagcacttgctaatcctacgcttccg 1786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 284 - 432
Target Start/End: Original strand, 2767870 - 2768015
Alignment:
Q  284 ataacttttattcattcaataatattttagagag-ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc 382  Q
    |||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| | |||| || |||| |||||| ||||||||||||||| |||    
T  2767870 ataacttttattcaattaataatattttagagagtttttctcaatttctggtggattccgaaacccta-tttctcaaattcgtcgcttgcgaacttattc 2767968  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
     ||||||||||  ||||||| |   || |||||||||||||||| |||||    
T  2767969 ctttcaatctaggtttagcgtt---taacctacgcttccgtactgcgtca 2768015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 287 - 410
Target Start/End: Original strand, 35814814 - 35814937
Alignment:
Q  287 acttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctttt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||  ||||| |||||| |||| |||||||||||| || ||| |  |||    
T  35814814 acttttattcattcaataatattttagagagttttctcaatttatggtagattcaagaaccttatttttacaagtttgtcgcttgcaaagttggttcttt 35814913  T
Q  387 caatctaaatttagcgcttgctag 410  Q
    ||||||| |||||| | |||||||    
T  35814914 caatctagatttagtgtttgctag 35814937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 297 - 432
Target Start/End: Original strand, 1874493 - 1874627
Alignment:
Q  297 attcaataatattttagagagttttc-tcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaatctaa 394  Q
    |||||||||||||||||||||||||| ||||||   |||||||||| ||||| ||||||||||| ||||||| |||| |||||| |||||||||||| |     
T  1874493 attcaataatattttagagagttttcctcaatt---ggtggattcttgaaccttattttcacaagtttgtcgtttgcaaacttgtttcttttcaatcaag 1874589  T
Q  395 atttagcgcttgctagcctacgcttccgtactacgtca 432  Q
     ||||| | |||||| | ||||||||||||||||||||    
T  1874590 gtttagtgtttgctaacatacgcttccgtactacgtca 1874627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 286 - 409
Target Start/End: Complemental strand, 27309762 - 27309638
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttctt 384  Q
    |||||||||||||| |||||| |||| ||||||||||| ||||| |||  ||||   ||||| ||||||||||| |||||||||||| |||||| |||||    
T  27309762 aacttttattcattaaataattttttggagagttttcttaatttttggcagattagagaaccctattttcacaagtttgtcgcttgcaaacttgtttctt 27309663  T
Q  385 ttcaatctaaatttagcgcttgcta 409  Q
    |||||||||  ||||||||||||||    
T  27309662 ttcaatctaggtttagcgcttgcta 27309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 286 - 368
Target Start/End: Complemental strand, 1690278 - 1690196
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgc 368  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||| |||||||  ||||| ||||||||||||||||||||    
T  1690278 aacttttattcattaaatactattttagagaattttctcaatttctgatggattccagaaccctattttcacaaatttgtcgc 1690196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 8063961 - 8063843
Alignment:
Q  267 agttgtagcttaa-aggcataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgt 365  Q
    ||||||||||||| ||||||  |||||||| |||||||||||||||||||| |||||||||||||| |||||||       | | ||||||||||||| |    
T  8063961 agttgtagcttaagaggcat--cttttattaattcaataatattttagagaattttctcaatttctagtggatt-------cctgttttcacaaatttat 8063871  T
Q  366 cgcttgcgaacttgttcttttcaatcta 393  Q
    ||||||| ||||||||||||||||||||    
T  8063870 cgcttgcaaacttgttcttttcaatcta 8063843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 284 - 430
Target Start/End: Original strand, 1883435 - 1883576
Alignment:
Q  284 ataacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-tt 381  Q
    ||||||||||||||   ||||||||||||||||||||| ||||||     || |||||||||||| ||||||||||| ||||||| |||| |||||| ||    
T  1883435 ataacttttattcaa--aataatattttagagagtttttctcaat-----gttgattctggaaccttattttcacaagtttgtcgtttgcaaacttgttt 1883527  T
Q  382 cttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgt 430  Q
    ||||||||||||  ||||| | |||||||| ||||||| ||||||||||    
T  1883528 cttttcaatctaggtttagtgtttgctagcatacgcttacgtactacgt 1883576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 11228661 - 11228758
Alignment:
Q  285 taacttttattcattcaataatattttagagagttttctcaa-tttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt 381  Q
    ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||| |||||||||| | ||||||||    
T  11228661 taacttttaatcaatcactaatattttagagagttttctcaattttctggtggattctagaaccctatttccacaagtttgtcgcttccaaacttgtt 11228758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 13882775 - 13882686
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  13882775 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 13882686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 349 - 432
Target Start/End: Complemental strand, 13886243 - 13886159
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  13886243 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 13886159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 344 - 433
Target Start/End: Complemental strand, 859245 - 859155
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtcaa 433  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||| | ||||||    
T  859245 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtcaa 859155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 344 - 433
Target Start/End: Complemental strand, 1217249 - 1217159
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtcaa 433  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||| | ||||||    
T  1217249 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaatcctacgcttccgtattgcgtcaa 1217159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 18790311 - 18790234
Alignment:
Q  294 ttcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgc 372  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  || | |||||||||| | |||||||||||    
T  18790311 ttcattcagtaatattttagagagttttctcaatttctggtggattctaaaatcctattttcacata-ttgtcgcttgc 18790234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 7803148 - 7803030
Alignment:
Q  316 agttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-cttttcaatctaaatttagcgcttgctagccta 414  Q
    |||| |||||| || |||||||||| |||||| |||||||| || ||||| |||||| |||||||| |||||| | |||  |||| | ||||||| ||||    
T  7803148 agttgtctcaaattatggtggattccggaaccttattttcataagtttgttgcttgcaaacttgtttcttttcgacctaggtttaacccttgctaaccta 7803049  T
Q  415 cgcttccgtactacgtcaa 433  Q
    |||||||||||| ||||||    
T  7803048 cgcttccgtactgcgtcaa 7803030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 422
Target Start/End: Complemental strand, 4133393 - 4133284
Alignment:
Q  314 agagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt-ttcaatctaaatttagcgcttgctagcc 412  Q
    |||||||||||||||||| | |||||   ||||  ||||||||||| |||||||||||  || |||||| | |||||||||| ||||||  |||||||||    
T  4133393 agagttttctcaatttctaggggatttcagaactctattttcacaagtttgtcgcttgaaaatttgttcatcttcaatctaagtttagcatttgctagcc 4133294  T
Q  413 tacgcttccg 422  Q
    ||||||||||    
T  4133293 tacgcttccg 4133284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 4956009 - 4955956
Alignment:
Q  288 cttttattcattcaataatattttagagagttttctcaatttctggtggattct 341  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  4956009 cttttattcattcaataatattttagggagttttctcaatttctaatggattct 4955956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 623 - 733
Target Start/End: Complemental strand, 8482642 - 8482532
Alignment:
Q  623 tgtgtttggatagagaattttaatgaggaaatataatatttttggagtatttaaattgatttggcccaaattccactgtttg-ggaatatatttaagtca 721  Q
    |||||||||||||||||||||| | | | ||| |||| |||||| ||||||||||||||| ||  |||||||||||  ||||   || ||||||||||||    
T  8482642 tgtgtttggatagagaattttatttaaggaatgtaat-tttttgaagtatttaaattgatctgaaccaaattccacgttttgaaaaaaatatttaagtca 8482544  T
Q  722 tttttaaaattc 733  Q
    ||||||||||||    
T  8482543 tttttaaaattc 8482532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 19404257 - 19404118
Alignment:
Q  286 aacttttattcattcaataa-tattttagagagttttctcaatttctggtggattctggaaccatattttcacaaattt-gtcgcttgcgaactt-gttc 382  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| | | ||||||| |||||   ||||| ||| ||| || | ||| ||||||  |||    
T  19404257 aacttttattcattcaataaatattttagagagttttttcaattttttgcggattctagaacccctttttcgcaagtttcgttgtttgtgaacttatttc 19404158  T
Q  383 ttttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||| ||| ||  ||||||  |||||||||||||||||||    
T  19404157 tttttaatttaggtttagcatttgctagcctacgcttccg 19404118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 4133436 - 4133398
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctc 324  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  4133436 aacttatattcattcaataatattttagagagttttctc 4133398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 8915313 - 8915279
Alignment:
Q  289 ttttattcattcaataatattttagagagttttct 323  Q
    |||||||||||||||||||||||||||||||||||    
T  8915313 ttttattcattcaataatattttagagagttttct 8915279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 430
Target Start/End: Complemental strand, 1220529 - 1220442
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgt 430  Q
    |||| ||||||||||| ||||||| |||| ||||||||| |||| || ||  ||||||| ||||| | |||||||||| |||||||||    
T  1220529 aaccctattttcacaagtttgtcgtttgcaaacttgttcatttctatgtaggtttagcgtttgctaaccctacgcttctgtactacgt 1220442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 1753695 - 1753640
Alignment:
Q  336 gattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaat 390  Q
    |||||||||||  ||||||||||| |||||||||||| |||||| |||||||||||    
T  1753695 gattctggaactctattttcacaagtttgtcgcttgcaaacttgtttcttttcaat 1753640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 1785541 - 1785499
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctg 332  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  1785541 ttttattcattcaataatatttta-agaattttctcaatttctg 1785499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 11001159 - 11001101
Alignment:
Q  89 atcagaatgagaatttggggtctgagttcttcaaag-tggaggagattgatgtaggaggg 147  Q
    |||| ||||||||||||||||| |||||||||| || ||||||||| |||||||||||||    
T  11001159 atcacaatgagaatttggggtc-gagttcttcagaggtggaggagactgatgtaggaggg 11001101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 29175780 - 29175838
Alignment:
Q  367 gcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgta 424  Q
    |||||| ||||| ||||||||||||||  ||||||||||||| | ||||||||||||||    
T  29175780 gcttgcaaactttttcttttcaatctaggtttagcgcttgctaaccctacgcttccgta 29175838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 661 - 763
Target Start/End: Complemental strand, 11356 - 11254
Alignment:
Q  661 tttttggagtatttaaattgatttggcccaaattccactgtttgggaatatatttaagtcatttttaaaattcaaggcatttagataagaatttctctct 760  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  11356 tttttggagtatttaaattgacttgacccaaattccattgtttgggaaaatatttaagtcatttttaaaattcaaggcatttagataagaatttttcttt 11257  T
Q  761 tgc 763  Q
    |||    
T  11256 tgc 11254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 78; Significance: 8e-36; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 286 - 420
Target Start/End: Original strand, 9644 - 9780
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaa--atttgtcgcttgcgaacttgttct 383  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||| |||||||||||   || ||||||||  ||||||||||    
T  9644 aacttttattcattcaataatatttcagagagttttctcaatttctggtggatttcggaaccctattttcacaagtgttagtcgcttggaaacttgttct 9743  T
Q  384 tttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    ||||||||||  |||| ||||||||||| ||||||||    
T  9744 tttcaatctaggtttaccgcttgctagcatacgcttc 9780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 8e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 22440799 - 22440936
Alignment:
Q  286 aacttttattcattcaataatattttagagag-ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt 384  Q
    |||||| |||||||||||||||||||||| || |||||| ||||||| ||||||||||||||| |||| ||| || |||||||||||||||| |||||||    
T  22440799 aactttgattcattcaataatattttagataggttttcttaatttctagtggattctggaaccctattatcataagtttgtcgcttgcgaacatgttctt 22440898  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||| |||||  |||||| ||||||||||||||||||||    
T  22440899 ttctatctaggtttagcacttgctagcctacgcttccg 22440936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 286 - 414
Target Start/End: Original strand, 492508 - 492638
Alignment:
Q  286 aacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-ct 383  Q
    |||||||||||||| |||||||||| |||||||||| || |||||||||| ||||| | |||| ||| ||||||| |||||||||||| |||||||| ||    
T  492508 aacttttattcatttaataatatttcagagagtttttcttaatttctggttgattccgaaaccctatcttcacaagtttgtcgcttgcaaacttgtttct 492607  T
Q  384 tttcaatctaaatttagcgcttgctagccta 414  Q
    |||||||||||||||||||||||||||||||    
T  492608 tttcaatctaaatttagcgcttgctagccta 492638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 299 - 422
Target Start/End: Original strand, 26140298 - 26140422
Alignment:
Q  299 tcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttct-tttcaatctaaatt 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || |||||||||||| | |||||| | |||||||||| |||    
T  26140298 tcaataatattttagagagttttctcaatttttggtggattcttgaaccctattttcataagtttgtcgcttgcaatcttgttttctttcaatctagatt 26140397  T
Q  398 tagcgcttgctagcctacgcttccg 422  Q
    ||||| |||||| |||| |||||||    
T  26140398 tagcgtttgctaacctatgcttccg 26140422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 284 - 422
Target Start/End: Original strand, 18252356 - 18252495
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttct 383  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||| ||||||||||  |||||||||||| ||||||||||    
T  18252356 ataacttctattcattcaataatattttaaagagttttctcaatttctagtggattatagaaccctattttcacaggtttgtcgcttgcaaacttgttct 18252455  T
Q  384 -tttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
     |||| |||||  |||| ||||||  ||||||| ||||||    
T  18252456 atttctatctaggtttaacgcttgtaagcctacacttccg 18252495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 294 - 422
Target Start/End: Complemental strand, 8456520 - 8456389
Alignment:
Q  294 ttcattcaataatattttagagagttttctcaatttc----tggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-cttttca 388  Q
    |||| |||||||||||||||||  |||||||||||||    |||||||||  |||| | |||||| |||| || |||||||||||||||||| |||||||    
T  8456520 ttcaatcaataatattttagag--ttttctcaatttcgatctggtggatttcggaatcctatttttacaagttcgtcgcttgcgaacttgtttcttttca 8456423  T
Q  389 atctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||||  |||||||||||||| ||||||||||||    
T  8456422 atctaggtttagcgcttgctaccctacgcttccg 8456389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 297 - 386
Target Start/End: Complemental strand, 19497441 - 19497351
Alignment:
Q  297 attcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctttt 386  Q
    |||||||||||||||||||| |||| |||||||| || ||||||  |||||| ||||||||||| |||||||||||| |||||||||||||    
T  19497441 attcaataatattttagagattttttctcaatttttgatggatttcggaaccctattttcacaagtttgtcgcttgcaaacttgttctttt 19497351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 344 - 431
Target Start/End: Complemental strand, 21849054 - 21848966
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtc 431  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||| ||||||||| | |||||||||||||||| ||||    
T  21849054 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttggcgcttgctaaccctacgcttccgtactgcgtc 21848966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 344 - 434
Target Start/End: Complemental strand, 40778875 - 40778784
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtcaaa 434  Q
    |||| |||||| |||| |||||||||||| |||||||||||||| |||||  ||||||||||| | | ||| |||||||||||| |||||||    
T  40778875 aaccctatttttacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgttaaccctgcgcttccgtactgcgtcaaa 40778784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 5e-34; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 288 - 432
Target Start/End: Complemental strand, 27822264 - 27822118
Alignment:
Q  288 cttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgtt-cttt 385  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||  |||||| | ||||||||| |||||||||||  |||||||| ||||    
T  27822264 cttttattcaatcaataatattttagagagtttttctcaatttctggtggatttcggaaccctgttttcacaagtttgtcgcttgaaaacttgttccttt 27822165  T
Q  386 tcaatctaaatttagcgcttgctagcctacgcttccgtactacgtca 432  Q
    || || ||  ||||||| ||||||||||||||||||||||| |||||    
T  27822164 tctatttaggtttagcgtttgctagcctacgcttccgtactgcgtca 27822118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 1127199 - 1127323
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttc 387  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||| |||| | |||  |||||||||||||||||||||||| |||||| |||||||     
T  1127199 ttttattcattcaatattattttagagagttttctcaatttttggtgtattccgaaacactattttcacaaatttgtcgcttgcaaacttgtttcttttt 1127298  T
Q  388 aatctaaatttagcgcttgctagcc 412  Q
    ||||||  ||||||||| |||||||    
T  1127299 aatctaggtttagcgctcgctagcc 1127323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 267 - 426
Target Start/End: Complemental strand, 18728011 - 18727849
Alignment:
Q  267 agttgtagcttaaaggcataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccata-ttttcacaaatttgt 365  Q
    ||||||||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||  |||||| || |||||||  |||| |    
T  18728011 agttgtagcctaaagggataacttttattcaatcaattatattttagagagttttctcaatttctggtggatttcggaaccttatttttcaccgatttat 18727912  T
Q  366 cgcttgcgaacttgtt--cttttcaatctaaatttagcgcttgctagcctacgcttccgtact 426  Q
     |||||| ||||| ||   ||||| |||||| ||||||| |||||||||||| ||| ||||||    
T  18727911 tgcttgcaaacttatttctttttctatctaagtttagcgtttgctagcctacactttcgtact 18727849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 286 - 419
Target Start/End: Original strand, 32361310 - 32361443
Alignment:
Q  286 aacttttattcattcaataatattttagagag-ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt 384  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |||||| |||||| |||| ||| |||||||| ||| | |||||    
T  32361310 aacttttattcattcaataatattttagagagtttttctcaatttctcgtagattccggaaccttatttttacaattttatcgcttgcaaacat-ttctt 32361408  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgctt 419  Q
    ||||||||| ||||| |||||||||  ||||||||    
T  32361409 ttcaatctagatttaacgcttgctaatctacgctt 32361443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 301 - 434
Target Start/End: Complemental strand, 33615636 - 33615502
Alignment:
Q  301 aataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttc-ttttcaatctaaattta 399  Q
    ||||||||||||||||||||| ||||||| ||||| |||||| |||| ||||||||||| |||||||||||| ||||||||| ||||| |||||  |||     
T  33615636 aataatattttagagagttttttcaatttatggtgaattctgaaaccctattttcacaagtttgtcgcttgcaaacttgttctttttctatctaggtttt 33615537  T
Q  400 gcgcttgctagcctacgcttccgtactacgtcaaa 434  Q
    ||||||| ||||||||| ||||||| | |||||||    
T  33615536 gcgcttgttagcctacgtttccgtaatgcgtcaaa 33615502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 11658873 - 11659005
Alignment:
Q  286 aacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt 384  Q
    |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||   |||  ||||||||||| ||| |||||||| || ||||||||    
T  11658873 aacttttattcaatcaataatattttagagagtttttctcaatttttggtggattccaaaactctattttcacaagtttatcgcttgcaaatttgttctt 11658972  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgc 417  Q
    |||||||||  ||||| |||||||| |||||||    
T  11658973 ttcaatctaggtttagtgcttgctaacctacgc 11659005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 289 - 422
Target Start/End: Original strand, 12882067 - 12882202
Alignment:
Q  289 ttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tctttt 386  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| ||||||||||| ||||||||||   ||||||| |||| |    
T  12882067 ttttattcattcaataatattttagagagtttttctcaatttctggtggattccgaaaccctattttcacaagtttgtcgctttaaaacttgtctcttct 12882166  T
Q  387 caatctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||||||  || || | ||||||| |||||||||||    
T  12882167 caatctaggttcagtgtttgctagtctacgcttccg 12882202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 306 - 420
Target Start/End: Complemental strand, 8049092 - 8048978
Alignment:
Q  306 tattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgctt 405  Q
    ||||||||||||||||||||||||||||||||| | ||| || ||||||||||| |||||| ||||| ||||| ||||||| ||||||   |||  ||||    
T  8049092 tattttagagagttttctcaatttctggtggatcccggagccttattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgctt 8048993  T
Q  406 gctagcctacgcttc 420  Q
    |||||||||||||||    
T  8048992 gctagcctacgcttc 8048978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 284 - 386
Target Start/End: Complemental strand, 24443220 - 24443118
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttct 383  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||||| |||||| | || |||||||||||| | | ||||||    
T  24443220 ataacttttattcattcaataatattgcagagagttttcttaatttctggttgattctggaaccctatttttataagtttgtcgcttgcaagcctgttct 24443121  T
Q  384 ttt 386  Q
    |||    
T  24443120 ttt 24443118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 3536034 - 3536123
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  3536034 aaccctattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 3536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 12778547 - 12778417
Alignment:
Q  286 aacttttattcattcaataatattttagagagtttt--ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttct 383  Q
    |||||||||||||||||||| |||||| ||||||||  ||||||||||||| |||||  ||||| |||||||||||  || |||||||| |||           
T  12778547 aacttttattcattcaataa-attttatagagttttttctcaatttctggtagattccagaaccttattttcacaagattatcgcttgcaaac------- 12778456  T
Q  384 tttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  12778455 tttcaatctagatttagcgcttactagcctacgcttccg 12778417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 18727115 - 18727186
Alignment:
Q  351 ttttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccg 422  Q
    ||||||||| ||||||||||||||||||||  |||||||||||  ||||||| |||||||||||||||||||    
T  18727115 ttttcacaagtttgtcgcttgcgaacttgtgtttttcaatctaggtttagcgtttgctagcctacgcttccg 18727186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 34373924 - 34373865
Alignment:
Q  295 tcattcaataatattttagagagttttctcaatttctggtggattctggaaccatatttt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  34373924 tcattcaataatattttagagagttttctcaatttctggtggattccataaccatatttt 34373865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 344 - 432
Target Start/End: Original strand, 3542245 - 3542334
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    |||| ||||||||||| |||||||||| | |||||||||||||| |||||  ||||||||||||| | |||||||||||||||| |||||    
T  3542245 aaccctattttcacaagtttgtcgcttacaaacttgttcttttctatctaggtttagcgcttgctaaccctacgcttccgtactgcgtca 3542334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 33215282 - 33215185
Alignment:
Q  314 agagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaatctaaatttagcgcttgctag 410  Q
    |||||||| |||||||||||||||||  |||||   |||||||||  |||||||||||| |||||| ||||||| |||||| |||||||| |||||||    
T  33215282 agagttttttcaatttctggtggattacggaacttgattttcacaggtttgtcgcttgcaaacttgtttctttttaatctagatttagcgtttgctag 33215185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 14216818 - 14216882
Alignment:
Q  267 agttgtagcttaaaggcataacttttattcattcaataatattttagagagttttctcaatttct 331  Q
    ||||||||| |||  | |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  14216818 agttgtagcctaagaggataacttttatttattcaataatatttcagagagttttctcaatttct 14216882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 30049921 - 30050005
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtactacgtca 432  Q
    ||||||||||| |||||||||||| |||||||||||||| || ||  ||||||||||||| | ||| |||||||||||| |||||    
T  30049921 tattttcacaagtttgtcgcttgcaaacttgttcttttctatataggtttagcgcttgctaacccttcgcttccgtactgcgtca 30050005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 29340895 - 29340812
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtact 426  Q
    |||| ||||||||||| |||||||||||| |||||||| ||||| |||||  |||||||| |||| | ||||||||||||||||    
T  29340895 aaccctattttcacaagtttgtcgcttgcaaacttgtttttttctatctaggtttagcgcctgctaaccctacgcttccgtact 29340812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 14238419 - 14238507
Alignment:
Q  327 tttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttcaatctaaatttagcgcttgctagccta 414  Q
    |||||| |||| || |||||| ||||||||||| |||||||||||| |||||| ||||||||||| ||  ||||| | |||||||||||    
T  14238419 tttctgatggactccggaaccttattttcacaagtttgtcgcttgcaaacttgtttcttttcaatttatgtttagtgtttgctagccta 14238507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 30052208 - 30052264
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgctt 405  Q
    ||||||||||| |||||||||||| |||||||||||||| |||||  ||||||||||    
T  30052208 tattttcacaagtttgtcgcttgcaaacttgttcttttctatctaggtttagcgctt 30052264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 297 - 426
Target Start/End: Original strand, 22910754 - 22910885
Alignment:
Q  297 attcaataatattttagagag-ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tcttttcaatctaa 394  Q
    |||||||| ||||| |||||| |||||||||||| |||||| |||  ||||| |  ||||| || |||||||  ||| ||||||| | |||||||||||     
T  22910754 attcaatattatttcagagagcttttctcaatttttggtggtttccagaacctttatttcataagtttgtcgaatgcaaacttgtcttttttcaatctag 22910853  T
Q  395 atttagcgcttgctagcctacgcttccgtact 426  Q
     ||||  ||||||||||||||||||| |||||    
T  22910854 gtttaaagcttgctagcctacgcttctgtact 22910885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 18718279 - 18718201
Alignment:
Q  351 ttttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttccgtactacgtc 431  Q
    ||||||||| ||||||  ||||||| ||||  |||||||||||  |||||||||||||||||||| |||| ||||| ||||    
T  18718279 ttttcacaagtttgtc--ttgcgaatttgtctttttcaatctaggtttagcgcttgctagcctacacttctgtactgcgtc 18718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 24664209 - 24664298
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaactt 378  Q
    ||||||||||| |||||||||| |||||||||||| ||| | |||||||||  | |||| |||||| |||  ||| |||||||| |||||    
T  24664209 ttttattcatttaataatatttcagagagttttcttaatctttggtggatttcgaaaccttatttttacatttttatcgcttgcaaactt 24664298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 393
Target Start/End: Complemental strand, 33693969 - 33693866
Alignment:
Q  289 ttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttttc 387  Q
    |||||||||||||||| ||||| | |||||||| |||| |||  ||||||||  |||| |||||||||||  ||||| |||||| || ||| ||||||||    
T  33693969 ttttattcattcaatattatttcaaagagttttatcaagttc-cgtggattc-cgaactatattttcacaggtttgttgcttgcaaatttgtttcttttc 33693872  T
Q  388 aatcta 393  Q
    ||||||    
T  33693871 aatcta 33693866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 70; Significance: 5e-31; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 286 - 419
Target Start/End: Original strand, 37654 - 37786
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttt 385  Q
    |||| ||||||||| ||| ||||||||||||||||||  |||||||||| |||| ||||||| |||||||| || |||||||||||| ||||||||||||    
T  37654 aactgttattcatttaattatattttagagagttttcctaatttctggtcgattttggaacc-tattttcataagtttgtcgcttgcaaacttgttcttt 37752  T
Q  386 tcaatctaaatttagcgcttgctagcctacgctt 419  Q
    ||||||||  |||||||||| ||||| |||||||    
T  37753 tcaatctaggtttagcgctttctagcttacgctt 37786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 285 - 420
Target Start/End: Original strand, 49263 - 49398
Alignment:
Q  285 taacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt 384  Q
    ||||||||||||||| ||| ||||||||||||||||||   |||| ||||||||| ||||||| |||||||| || |||||||||||| |||||||||||    
T  49263 taacttttattcatttaattatattttagagagttttccttatttatggtggattttggaaccctattttcataagtttgtcgcttgcaaacttgttctt 49362  T
Q  385 ttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
     ||||||||  || | ||||| ||||| ||||||||    
T  49363 ctcaatctaggttcaacgctttctagcttacgcttc 49398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 298 - 426
Target Start/End: Original strand, 10608 - 10738
Alignment:
Q  298 ttcaataatattttagagag-ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgt-tcttttcaatctaaa 395  Q
    ||||||| ||||| |||||| |||||||||||| | |||| |||  ||||| |  ||||| || |||||||  ||| ||||||| | |||||||||||      
T  10608 ttcaatattatttcagagagcttttctcaattttttgtggtttccagaacctttatttcataagtttgtcgaatgcaaacttgtcttttttcaatctagg 10707  T
Q  396 tttagcgcttgctagcctacgcttccgtact 426  Q
    ||||  ||||||||||||||||||| |||||    
T  10708 tttaaagcttgctagcctacgcttctgtact 10738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 288 - 433
Target Start/End: Original strand, 145677 - 145823
Alignment:
Q  288 cttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg-ttcttt 385  Q
    ||||||||||||||||||||||||||| | |||| |||||||| ||||||||||| ||||| |||||| ||||  ||||||||||| |||||| || |||    
T  145677 cttttattcattcaataatattttagataatttttctcaatttttggtggattctagaaccctatttttacaagcttgtcgcttgcaaacttgatttttt 145776  T
Q  386 tcaatctaaatttagcgcttgctagcctacgcttccgtactacgtcaa 433  Q
    ||||||||  ||||||| |||||||| ||| |||||| ||||||||||    
T  145777 tcaatctaggtttagcgattgctagcttacacttccg-actacgtcaa 145823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 144066 - 143974
Alignment:
Q  284 ataacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttg 379  Q
    |||||||||||| |||||||||||||||||||||||||||||||   |||||||||| |||| | ||||||||||||||| |||||||| ||||||    
T  144066 ataacttttatttattcaataatattttagagagttttctcaat---tggtggattccggaaacctattttcacaaatttttcgcttgcaaacttg 143974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 63; Significance: 7e-27; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 286 - 411
Target Start/End: Original strand, 1599 - 1725
Alignment:
Q  286 aacttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttctt 384  Q
    |||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||  |||||||||||| |||| ||||||| |||| ||||||||  |    
T  1599 aacttttattcattgaataatattttagatagtttttctcaaattctggtggattccagaaccatattttgacaagtttgtcgtttgcaaacttgtttct 1698  T
Q  385 ttcaatctaaatttagcgcttgctagc 411  Q
    |||||||||  |||| |||||||||||    
T  1699 ttcaatctaggtttaacgcttgctagc 1725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 15989 - 16119
Alignment:
Q  286 aacttttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttt 385  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  ||   |||||||| |  |||||| ||||| ||||||||||||    
T  15989 aacttttattcattcaataatattttatagagttttctaaatttctggtggattctataatactattttcagatgtttgtcacttgcaaacttgttcttt 16088  T
Q  386 tcaatctaaatttagcgcttgctagcctacg 416  Q
    || |||||  |||||| |||| |||||||||    
T  16089 tctatctaggtttagcacttgttagcctacg 16119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 14821 - 14923
Alignment:
Q  318 ttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgc 417  Q
    |||| ||||||| |||||||||| |||  | ||||||||||| ||| |||||||| ||||| ||  |||||||| |  ||||||||||||||||||||||    
T  14821 ttttttcaatttttggtggattccggattcctattttcacaagtttttcgcttgccaacttatttatttcaatcaaggtttagcgcttgctagcctacgc 14920  T
Q  418 ttc 420  Q
    |||    
T  14921 ttc 14923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 290 - 405
Target Start/End: Complemental strand, 15207 - 15092
Alignment:
Q  290 tttattcattcaataatattttagagagttttctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaa 389  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||| |||| || |||||||  ||||||||   ||||||    
T  15207 tttattcattcaataatattttagaggattttctcaatttctggtggattctagaaccctatttttacaagttcgtcgcttaggaacttgtctctttcaa 15108  T
Q  390 tctaaatttagcgctt 405  Q
    ||||  ||||||||||    
T  15107 tctagttttagcgctt 15092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 17584 - 17707
Alignment:
Q  289 ttttattcattcaataatattttagagagtttt-ctcaatttctggtggattctggaaccatattttcacaaatttgtcgcttgcgaacttgttcttttc 387  Q
    ||||||||||| |||||||||||||| |||||| ||||| ||| |||||||||  |||||||||||| |||| ||||||| |||| ||||||||  ||||    
T  17584 ttttattcattgaataatattttagatagtttttctcaaattcaggtggattccagaaccatattttgacaagtttgtcgtttgcaaacttgtttctttc 17683  T
Q  388 aatctaaatttagcgcttgctagc 411  Q
    ||||||  |||| |||||||||||    
T  17684 aatctaggtttaacgcttgctagc 17707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 321 - 432
Target Start/End: Complemental strand, 46846 - 46733
Alignment:
Q  321 tctcaatttctggtggattctggaaccata-ttttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgct 418  Q
    ||||||||| |||||||||| |||||| || |||| | |  |||||||||||| |||||||||||||| |||||  ||||||||||||| | ||||||||    
T  46846 tctcaatttttggtggattccggaaccttaattttgataggtttgtcgcttgcaaacttgttcttttctatctaggtttagcgcttgctcaccctacgct 46747  T
Q  419 tccgtactacgtca 432  Q
    |||||||| |||||    
T  46746 tccgtactgcgtca 46733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 45351 - 45268
Alignment:
Q  344 aaccatattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgct-agcctacgcttccgtact 426  Q
    |||| |||||||| || |||||||||||| ||||||||||||   |||||| ||||||||||||| | ||||||||||||||||    
T  45351 aaccttattttcataagtttgtcgcttgcaaacttgttctttcttatctaattttagcgcttgctaaccctacgcttccgtact 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 11672 - 11601
Alignment:
Q  349 tattttcacaaatttgtcgcttgcgaacttgttcttttcaatctaaatttagcgcttgctagcctacgcttc 420  Q
    ||||||||||| |||||| ||||| ||||| ||||||| ||||||   |||  |||||||||||||||||||    
T  11672 tattttcacaagtttgtcacttgcaaactttttctttttaatctaggattaatgcttgctagcctacgcttc 11601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University