View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659-Insertion-8 (Length: 1072)

Name: NF5659-Insertion-8
Description: NF5659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659-Insertion-8
NF5659-Insertion-8
[»] chr7 (3 HSPs)
chr7 (7-322)||(10083047-10083362)
chr7 (388-765)||(10083428-10083805)
chr7 (767-821)||(10083916-10083969)
[»] chr3 (3 HSPs)
chr3 (19-310)||(22263857-22264148)
chr3 (19-310)||(22269692-22269983)
chr3 (8-310)||(45874415-45874720)
[»] chr5 (2 HSPs)
chr5 (16-192)||(41245821-41245997)
chr5 (116-177)||(42725004-42725065)
[»] scaffold0283 (1 HSPs)
scaffold0283 (116-177)||(18978-19039)
[»] chr1 (1 HSPs)
chr1 (130-184)||(47006360-47006414)


Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 7 - 322
Target Start/End: Original strand, 10083047 - 10083362
Alignment:
Q  7 attatgatcatcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcatt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  10083047 attatgatcatcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagtaatctcacttcagagtaaagtctatcaatcatt 10083146  T
Q  107 gcagggtcattgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacccg 206  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10083147 gcagggtcattgctgaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctataaacttttttgcaagcacccg 10083246  T
Q  207 atcctagtaactcgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcat 306  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10083247 atcctagtaactcgtcatatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcat 10083346  T
Q  307 ctagcaccaacatatg 322  Q
    ||||||||||||||||    
T  10083347 ctagcaccaacatatg 10083362  T

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Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 388 - 765
Target Start/End: Original strand, 10083428 - 10083805
Alignment:
Q  388 tctagacacttgtgatttttagagaataaaatcaattaaaaatgtttgacaatttatgtcgtgatgtcgaggtttttgatgtctctacaatcattgtgat 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10083428 tctagacacttgtgatttttagagaataaaatcaattaaaaatgtttgacaatttatgtcgtgatgtcaaggtttttgatgtctctacaatcattgtgat 10083527  T
Q  488 ttcgattaagtgttgtttaacgccgattcttctctatataatttatatgacacagccaccaccatagccgcgacaactattaaaaccttcgtaaaatcta 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10083528 ttcgattaagtgttgtttaacgccgattcttctctatataatttatatgacacagccaccaccatagccgtgacaactattaaaaccttcgtaaaatcta 10083627  T
Q  588 attgatgaaa-cttggtatgattttcaaagaacaaaatcaaatagagtt-ttaaagtaagttttgcaatt--tatgtcacgacattagggttttttatgt 683  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||  ||||| || |||||||||||||| ||||    
T  10083628 attgatgaaaccttggtatgattttcaaagaacaaaatcagatagagttataaaagtaagtttagcaatttatatgtgacaacattagggtttttcatgt 10083727  T
Q  684 cccagggatcataattcaaatttcgatctaggaagcattaaaactacaattctccacgatattaaaacttacgactcaacta 765  Q
    || |   ||||||||| |||||| ||| ||| |  |||| |||||| |||||||||| ||||||||||||||||||||||||    
T  10083728 ccga-taatcataatt-aaattt-gatttagaacacatt-aaactaaaattctccacaatattaaaacttacgactcaacta 10083805  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 767 - 821
Target Start/End: Original strand, 10083916 - 10083969
Alignment:
Q  767 ggaaataacaaagtattagaaaaagtaaatggcatgcatgacatttcagatcaaa 821  Q
    ||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||    
T  10083916 ggaaataacaatgtattagaaaaagtaaatgg-atgcgtgacaattcagatcaaa 10083969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 4e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 22263857 - 22264148
Alignment:
Q  19 atccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattgcagggtcattg 118  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| || |||| |  ||||||||||||||||| || |||||||||||||||||||||    
T  22263857 atccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattg 22263956  T
Q  119 cagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacccgatcctagtaact 218  Q
    | |||||| |  ||||||||||||||||| |||||||||||||||||||| | |||||||||| |||| |||||||| |||||||| | ||| ||||| |    
T  22263957 ctgaaatttctgagcttaacttgattccatgctacttctattccttcttcattatcaaatgctttatagacttttttacaagcaccagctccaagtaatt 22264056  T
Q  219 cgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctag 310  Q
    | |||||||||||||||||||| ||||||||| |||||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  22264057 catcgtatcttccatatcttccagttggatcagtttcaacaaatgtttctgtgtctttgtcggatggattttgttgaacacttggcatctag 22264148  T

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Target: chr3; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 22269983 - 22269692
Alignment:
Q  19 atccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattgcagggtcattg 118  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||| || |||| |  ||||||||||||||||| || |||||||||||||||||||||    
T  22269983 atccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtctttcaatcattgcagggtcattg 22269884  T
Q  119 cagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacccgatcctagtaact 218  Q
    | |||||| |  ||||||||||||||||| |||||||||||||||||||| | |||||||||| |||| |||||||| |||||||| | ||| ||||| |    
T  22269883 ctgaaatttctgagcttaacttgattccatgctacttctattccttcttcattatcaaatgctttatagacttttttacaagcaccagctccaagtaatt 22269784  T
Q  219 cgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggcatctag 310  Q
    | |||||||||||||||||||| ||||||||| |||||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  22269783 catcgtatcttccatatcttccagttggatcagtttcaacaaatgtttctgtgtctttgtcggatggattttgttgaacacttggcatctag 22269692  T

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Target: chr3; HSP #3
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 45874415 - 45874720
Alignment:
Q  8 ttatgatcatcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattg 107  Q
    |||||||| ||||| ||||||||||  ||||| ||||||||||||  |||  |||||||||||||||| || ||||||||||||||||||| ||||||||    
T  45874415 ttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaagcaatctaacttcagagtaaagcctatgaatcattg 45874514  T
Q  108 cagggtcattg---cagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttttttgcaagcacc 204  Q
    ||||||||||    | |||||| |  || || ||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||| |||| |||    
T  45874515 cagggtcattattactgaaatttctgagtttgacttgattccacgcaacttctattccttcttcttgatcaaatgctttgtacacttttttacaagaacc 45874614  T
Q  205 cgatcctagtaactcgtcgtatcttccatatcttccggttggatcattttcaacaaatagttctgagtctttgtcggatggatttggtttaacacttggc 304  Q
     ||||| ||||| || | |||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||  |    
T  45874615 tgatccaagtaattcattgtatctaccatatcttccagttgggtcagtttcaacaaatggttctgagtctttgtcgaatggatttggtttaacacttttc 45874714  T
Q  305 atctag 310  Q
    ||||||    
T  45874715 atctag 45874720  T

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Target: chr5 (Bit Score: 65; Significance: 5e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 41245821 - 41245997
Alignment:
Q  16 atcatccctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagcaacctcacttcagagtaaagcctatcaatcattgcagggtca 115  Q
    |||||| ||||||||| |||||||| ||||||||||| |||| |||| |||||| |  |||||||||||||| |||||||| || | ||| ||||| |||    
T  41245821 atcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctctctaccatagcaggttca 41245920  T
Q  116 ttgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctctatacacttt 192  Q
    |  ||||| || |  ||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| | |||||||||    
T  41245921 tcacagaagtttcttagcttcacttggttccatgctacctctattccttcttcttgatcgaatgcacgatacacttt 41245997  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 42725065 - 42725004
Alignment:
Q  116 ttgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaa 177  Q
    |||| |||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||    
T  42725065 ttgctgaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatcaaa 42725004  T

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Target: scaffold0283 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 19039 - 18978
Alignment:
Q  116 ttgcagaaattccgaagcttaacttgattccaagctacttctattccttcttcttgatcaaa 177  Q
    |||| |||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||    
T  19039 ttgctgaaattccgaagtttaacttgattccatgcaacttcaattccttcttcttgatcaaa 18978  T

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Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 47006360 - 47006414
Alignment:
Q  130 aagcttaacttgattccaagctacttctattccttcttcttgatcaaatgctcta 184  Q
    |||||| ||||||||||| ||||||||||||||||| |  | |||||||||||||    
T  47006360 aagctttacttgattccatgctacttctattccttcatactcatcaaatgctcta 47006414  T

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