View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_high_10 (Length: 334)
Name: NF5659_1D_high_10
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 127 - 298
Target Start/End: Original strand, 27724971 - 27725142
Alignment:
| Q |
127 |
atagcttactacgtcatcggaataacgaatgcgaaaacccagataggtaccataaccacccatagcaaacagcaccactgcctgcaagagcaattcatgt |
226 |
Q |
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| T |
27724971 |
atagcgtaccacatcatcggaaaatcgaatgcgaaaacccagataggtaccgtaaccacccatagcaaacagcaccactgcctgcaagagcaattcatgt |
27725070 |
T |
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| Q |
227 |
gacagaaaacgttaattaactaacttaactaaccaacgctctttctataactgaaatcagttagtatttatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27725071 |
gacagaaaacgttaattaactaacttaactaaccaacgctctttctataactgaaatcagttagtatttatt |
27725142 |
T |
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