View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5659_1D_high_11 (Length: 311)

Name: NF5659_1D_high_11
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5659_1D_high_11
NF5659_1D_high_11
[»] chr4 (1 HSPs)
chr4 (1-295)||(52727224-52727518)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 52727224 - 52727518
Alignment:
Q  1 cttccacactcaacttttgaagcttgttaagacaaccaatggaatcaggcaaggacctgatcttattgtagctaacatcaagttcagtgagggacaagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52727224 cttccacactcaacttttgaagcttgttaagacaaccaatggaatcaggcaaggacctgatcttattgtagctaacatcaagttcagtgagggacaagag 52727323  T
Q  101 aagtcctacagagtatggaatagaagtcaaatactgaaagttctgactcacgtttaggatttcaaggttgatgagattctcaagatcttccgggagagac 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  52727324 aagtcctactgagtatggaatagaagtcaaatactgaaagttctgactcacatttaggatttcaaggttgatgagattctcaagatcctccggaagagac 52727423  T
Q  201 ctaagacagttcagtcttgcgtctaaaacctttagagatgtgaggtgagatgtggagcgtggaaggaagatcagcttgttagagttgactgataa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52727424 ctaagacagttcagtcttgcgtctaaaacctttagagatgtgaggtgagatgtggagcgtggaaggaagatcagcttgttagagttgactgataa 52727518  T

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