View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_1D_high_12 (Length: 299)
Name: NF5659_1D_high_12
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_high_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0037 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 8059312 - 8059029
Alignment:
| Q |
12 |
atgaatgacaaattggatttatgattgtgtgagctacatacatatatgagggataattgcaaccataggaatccaggatatgactgtcatgagacaaagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8059312 |
atgaatgacaaattggatttatgattgtgtgatctacata----taggaggaataattgcaaccataggaatccaggatatgactgtcatgagacaatgt |
8059217 |
T |
|
| Q |
112 |
tgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatttctcttagacagatgcattgtatagaagagt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8059216 |
tgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatgtctcttagacagatgcattgtatagaagagt |
8059117 |
T |
|
| Q |
212 |
aggaccatctcaattctcatcactcaannnnnnnnattaattatgacagtatcatgtcagatacattagtagaatgaaaaacaaaatt |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8059116 |
aggaccatctcaattctcatcactcaattttttttattaattatgacagtatcatgtcagatacattagtagaatgaaaaacaaaatt |
8059029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 10428722 - 10428908
Alignment:
| Q |
104 |
gacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatttctcttagacagatgcattgtat |
203 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| |
|
|
| T |
10428722 |
gacaacgttgattcaagatatgtctcatttatcgtcttgtaaagagaagaaaatgaaatatcaaattcacttcaatgtcctttagaca---------tat |
10428812 |
T |
|
| Q |
204 |
agaagagtaggaccatctcaattctcatcactcaa---nnnnnnnnattaattatgacagtatcatgtcagatacattagtagaatgaaaaacaaa |
296 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
10428813 |
gaaagagtatgagcatctcaattctcatcactcaatttttttttttattaattacgacagtgtcatgtcggatacattagtaaaatgaaaaacaaa |
10428908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 296
Target Start/End: Original strand, 34767 - 34959
Alignment:
| Q |
99 |
catgagacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatttctcttagacagatgcat |
198 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| | |
|
|
| T |
34767 |
catgggacaacgttgattcaagatatgtctcatttatcgtcttgtaaagagaagaaaatgaaatatcaaattcacttcaatgtcctttagacatatgaa- |
34865 |
T |
|
| Q |
199 |
tgtatagaagagtaggaccatctcaattctcatcactcaannnnnnnn----attaattatgacagtatcatgtcagatacattagtagaatgaaaaaca |
294 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||| ||| || ||||||| |||||||||||| ||||||||||| |
|
|
| T |
34866 |
--------agagtatgaccatctcaattatcatcactcaattttttttttttattaattacgaccgtgtcatgtcggatacattagtaaaatgaaaaaca |
34957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University