View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_high_16 (Length: 220)
Name: NF5659_1D_high_16
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 37286616 - 37286490
Alignment:
| Q |
94 |
aaaaagtcatttccaaagaatgtaaaaaagtctttttcctactagtggaaagattactaaattcgcaaacttaaactggtttagaaaatgcatgtgtatg |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37286616 |
aaaaagtcatttccaaagaatgtaaaaaagtctttttcctactagtggaaagattaataaattcgcaaacttaaactggtttagaaaatgcatgtgtatg |
37286517 |
T |
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| Q |
194 |
cttttattttgttgttgtttttcctat |
220 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
37286516 |
cttttattttgttgatgtttttcctat |
37286490 |
T |
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