View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5659_1D_high_2 (Length: 513)
Name: NF5659_1D_high_2
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 9119049 - 9118559
Alignment:
| Q |
1 |
tttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9119049 |
tttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttc |
9118950 |
T |
|
| Q |
101 |
aaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9118949 |
aaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcacctgttagaagc |
9118850 |
T |
|
| Q |
201 |
tctgcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcacca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9118849 |
tctgcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgtacca |
9118750 |
T |
|
| Q |
301 |
ctgttgctatctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9118749 |
ctgttgctatctcggtttgatcaagtggaaccaatttggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactctt |
9118650 |
T |
|
| Q |
401 |
aacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgtttcc |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9118649 |
aacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgtttcc |
9118559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Original strand, 9170237 - 9170708
Alignment:
| Q |
9 |
cctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtt |
108 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||||||||||| || |
|
|
| T |
9170237 |
cctctaagtcttaaacaccttgaagcaagaatagcaacctccttaatctctttcttgttatcatcgttcacaaatccaacttgaatagcttcaaaaaatt |
9170336 |
T |
|
| Q |
109 |
tatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagctctgcaag |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
9170337 |
tatcttgttttaaacaagacaaaaagtgcatagcaagactaatggtctcttctggcctattaaaagaaagaggtttgtcacctgttagaagctctgcaag |
9170436 |
T |
|
| Q |
209 |
aactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcaccactgttgct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||| || |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9170437 |
aactactccaaagctataaacatcacttttttcggttaatttatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgct |
9170536 |
T |
|
| Q |
309 |
atctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
408 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170537 |
atctctgtttgatcaagtggaaccaatcttgaagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
9170636 |
T |
|
| Q |
409 |
tatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatcctta |
480 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170637 |
tatggataattggaattgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatcctta |
9170708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 9199804 - 9200284
Alignment:
| Q |
9 |
cctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtt |
108 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
9199804 |
cctctaagtcttaaacaccttgcagcaagaatagcaacctccttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtt |
9199903 |
T |
|
| Q |
109 |
tatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagctctgcaag |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
9199904 |
tatcttgttttaaacaagacaaaaagtgcatagcaagactaatggtttcttcttgcctgttaaaagaaagaggtttgtcacctgttagaagctctgcaag |
9200003 |
T |
|
| Q |
209 |
aactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcaccactgttgct |
308 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| || |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9200004 |
aaccactccaaagctataaacatcacttttctcggttagttgatgtgtttgcatatactcgggatctaagtatccaagtgttccttgcaccattgttgct |
9200103 |
T |
|
| Q |
309 |
atctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
408 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9200104 |
atctctgtttgatcaagtggaaccaatctggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggtactcttaacatctc |
9200203 |
T |
|
| Q |
409 |
tatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgttt |
489 |
Q |
| |
|
| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
9200204 |
tgtggataattggaattgatgcagctgaatgtagatatgataaagctccagctgtctccgctgctatccttaaacgtgttt |
9200284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 9218320 - 9218800
Alignment:
| Q |
9 |
cctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtt |
108 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9218320 |
cctctaagtcttaaacaccttgcagcaagaatagaaacctccttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtt |
9218419 |
T |
|
| Q |
109 |
tatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagctctgcaag |
208 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
9218420 |
tatcttgttttaaacaagacaaaaagtgcatagcaagactaatggtctcttctggcctgttaaaagaaagaggtttggcacctgttagaagctctgcaag |
9218519 |
T |
|
| Q |
209 |
aactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcaccactgttgct |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||| ||| ||| |
|
|
| T |
9218520 |
aactactccaaagctatacacatcacttttttcggttaattgatgtgtttgcatatactctggatctaagtatccaagagttccttgtaccattgtcgct |
9218619 |
T |
|
| Q |
309 |
atctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
408 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9218620 |
atctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
9218719 |
T |
|
| Q |
409 |
tatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgttt |
489 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
9218720 |
tatggataattggaattgatgcagctgaatgtagatatgataaagcaccagctgtctctgctgctatccttaaacgtgttt |
9218800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 9161417 - 9161891
Alignment:
| Q |
15 |
agtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
9161417 |
agtctcaaacaccttgctgcaagaatagcaacctccttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatctt |
9161516 |
T |
|
| Q |
115 |
gttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagctctgcaagaactac |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || ||||||||||||| |||||| |||||||||||| || || |||||||||||||||||||| |
|
|
| T |
9161517 |
gttttaaacaagacaaaaagtgcatagcaagactgatattctcttctggcctattaaaagaaagaggtttgtctcccgtaagaagctctgcaagaactac |
9161616 |
T |
|
| Q |
215 |
tccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcaccactgttgctatctcg |
314 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| |||||||| |||| ||||||||||||| |
|
|
| T |
9161617 |
accaaagctataaacatcacttttctctgttagttgatgtgtttgcatatactccggatctaagtaaccaagagttccttgtaccattgttgctatctcg |
9161716 |
T |
|
| Q |
315 |
gtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctctatgga |
414 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9161717 |
gtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactcttaacatctctatgga |
9161816 |
T |
|
| Q |
415 |
taattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgttt |
489 |
Q |
| |
|
|||| || | ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
9161817 |
taataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgctgctatctttaaacgtgttt |
9161891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 9155491 - 9155979
Alignment:
| Q |
1 |
tttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttc |
100 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||| |||||||||||||| |||||||| |||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
9155491 |
tttcctcacctcgaagtcgtaaacaccgtgctgccagaatagcaacctctttaatctcctccttgttttcatcatttaagataccaacttgaatagcttc |
9155590 |
T |
|
| Q |
101 |
aaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagc |
200 |
Q |
| |
|
||||| | |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||||| |||||||| || ||||| |||||| |
|
|
| T |
9155591 |
aaaaattctatcttgttttaaacaagacaaaaagtgcattgcaagactaatactctcttctggcctattaaaagatagaggtttatctcctgtcagaagc |
9155690 |
T |
|
| Q |
201 |
tctgcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcacca |
300 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||| |||||||| |||| |
|
|
| T |
9155691 |
tccgcaagcactactccaaagctatagacatcacttttctcggttaattgatgagtttgcatatactctggatctaggtatccaagagttccttgaacca |
9155790 |
T |
|
| Q |
301 |
ctgttgctatctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
|
|
| T |
9155791 |
ttgttgctatctcggtttgatcaagtggaactaacctcgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggtactttt |
9155890 |
T |
|
| Q |
401 |
aacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgttt |
489 |
Q |
| |
|
||||||||||||||||| || | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||| |
|
|
| T |
9155891 |
gacatctctatggataatcggtattgatgcagatgaatgtagatacgataaagctccggctgtctctgctgctatctttaaacgggttt |
9155979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 9229197 - 9229685
Alignment:
| Q |
1 |
tttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttc |
100 |
Q |
| |
|
||||||| ||| ||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||| | |||| |
|
|
| T |
9229197 |
tttcctcgcctttaagtctcaagcaccttgcagcaagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttc |
9229296 |
T |
|
| Q |
101 |
aaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagc |
200 |
Q |
| |
|
| | | | || | | |||||||||| |||||||| || ||||| || || | |||||||| || |||||| || |||||| ||||| ||||| ||| |
|
|
| T |
9229297 |
agacacatgattctctcttaaacaagataagaagtgaattgcaaggcttctgttttcttctggtctattaaaagaaataggtttctcccccgttaggagc |
9229396 |
T |
|
| Q |
201 |
tctgcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcacca |
300 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||||||||| |||| ||| || |||||||| || ||||| ||||| || ||||| |||||||| |||| |
|
|
| T |
9229397 |
tctgccagtactaccccgaagctataaacatcacttttctctgttagttggtgtgtttgcatatattctggatctaaatagccaagagttccttgtacca |
9229496 |
T |
|
| Q |
301 |
ctgttgctatctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactctt |
400 |
Q |
| |
|
| || |||||| || |||||||||||||||||| | ||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
9229497 |
cagtggctatcatagtatgatcaagtggaaccaatcttgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgttggcactttt |
9229596 |
T |
|
| Q |
401 |
aacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgttt |
489 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||| | || ||||||||||||| ||| |||| |
|
|
| T |
9229597 |
gacatctctatggataattggtaaggatgcagatgaatgtagatatgataaagctcctgctatttccgctgctatccttaaacgcgttt |
9229685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 489
Target Start/End: Complemental strand, 1843444 - 1842964
Alignment:
| Q |
9 |
cctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtt |
108 |
Q |
| |
|
|||| ||||||||||||| | || ||||||| ||| |||||||| ||||||| ||||| || |||||| | | ||| |||||||| ||||||| | | |
|
|
| T |
1843444 |
cctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacat |
1843345 |
T |
|
| Q |
109 |
tatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagctctgcaag |
208 |
Q |
| |
|
|||||| ||| || ||||| | || | ||| |||||||| | ||||||| ||||| |||| || |||||| ||||| ||||| | |||| |||| |
|
|
| T |
1843344 |
tatcttttttcaatcaagatagtaaattcattgcaagacttcttctctcttccggcctaccaaaacaaaaaggtttctcccccgttagcaactctacaag |
1843245 |
T |
|
| Q |
209 |
aactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcaccactgttgct |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||| |||||||| |||||||| |||||||| |||| ||||||||||||| ||| ||| |
|
|
| T |
1843244 |
aactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggct |
1843145 |
T |
|
| Q |
309 |
atctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
408 |
Q |
| |
|
|| || |||||||||| |||||||||| | |||||||||||||| || ||||| || |||| | ||| ||||||||||| |||||| ||||||| |
|
|
| T |
1843144 |
atttcagtttgatcaattggaaccaatcttgaagctccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactcttgacatctc |
1843045 |
T |
|
| Q |
409 |
tatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgttt |
489 |
Q |
| |
|
||||||| ||||| | ||| ||| ||||||||||||| || |||| | ||||| |||||| |||||| | ||||| |||| |
|
|
| T |
1843044 |
tatggattattggtattgaggcatatgaatgtagatatgacaaagtttcagctacctctgcggctatcttaagacgagttt |
1842964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 489
Target Start/End: Complemental strand, 1869053 - 1868573
Alignment:
| Q |
9 |
cctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtt |
108 |
Q |
| |
|
|||| ||||||||||||| | || ||||||| ||| |||||||| ||||||| ||||| || |||||| | | ||| |||||||| ||||||| | | |
|
|
| T |
1869053 |
cctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacat |
1868954 |
T |
|
| Q |
109 |
tatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagctctgcaag |
208 |
Q |
| |
|
|||||| ||| || ||||| | || ||||| |||||||| | | ||||| ||||| |||| || |||||| ||||| || || | |||| |||| |
|
|
| T |
1868953 |
tatcttttttcaatcaagatagtaaatgcattgcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctcccccgtcagcaactctacaag |
1868854 |
T |
|
| Q |
209 |
aactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcaccactgttgct |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||| |||||||| |||||||| |||||||| |||| ||||||||||||| ||| ||| |
|
|
| T |
1868853 |
aactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggct |
1868754 |
T |
|
| Q |
309 |
atctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
408 |
Q |
| |
|
|| || ||||||||||||||||||||| | |||||||||||||| || ||||| || |||| | ||| ||||||||||| |||||| ||||||| |
|
|
| T |
1868753 |
atttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactcttgacatctc |
1868654 |
T |
|
| Q |
409 |
tatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgctgctatccttagacgtgttt |
489 |
Q |
| |
|
||||||| || || | ||| ||| ||||||||||||| || |||||| ||||| |||||| |||||| | ||||| |||| |
|
|
| T |
1868653 |
tatggatgatgggtattgaggcatatgaatgtagatatgacaaagcttcagctacctctgcggctatcttaagacgagttt |
1868573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 445
Target Start/End: Complemental strand, 1857455 - 1857019
Alignment:
| Q |
9 |
cctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtt |
108 |
Q |
| |
|
|||| ||||||||||||| | || ||||||| ||| |||||||| ||||||| ||||| || |||||| | | ||| |||||||| ||||||| | | |
|
|
| T |
1857455 |
cctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaataacttcaaatacat |
1857356 |
T |
|
| Q |
109 |
tatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagctctgcaag |
208 |
Q |
| |
|
|||| | ||| || ||||| | || |||||||||||||| | | ||||| ||||| |||| || |||||| ||||| || || | ||| |||| |
|
|
| T |
1857355 |
tatcctttttcaagcaagatagaaaatgcatagcaagacttcttctttcttccggcctaccaaaacaaaaaggtttctcccccgtcagcaactccacaag |
1857256 |
T |
|
| Q |
209 |
aactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcaccactgttgct |
308 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||| |||||||| |||||||| |||||||| |||| ||||||||||||| ||| ||| |
|
|
| T |
1857255 |
aactactccaaagctatagacatcacttttttcagttaattgacttgtttgcatatactctggatctaagtagccaatagttccttgcaccattgtggct |
1857156 |
T |
|
| Q |
309 |
atctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactcttaacatctc |
408 |
Q |
| |
|
|| || ||||||||||||||||||||| | |||||||||||||| || ||||| || |||| | |||| ||||||||||| |||||| ||||||| |
|
|
| T |
1857155 |
atttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactcttgacatctc |
1857056 |
T |
|
| Q |
409 |
tatggataattggaaatgatgcagatgaatgtagata |
445 |
Q |
| |
|
||||||| || || ||| ||| ||||||||||||| |
|
|
| T |
1857055 |
tatggatgatgggtgttgaggcatatgaatgtagata |
1857019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 1815581 - 1816041
Alignment:
| Q |
1 |
tttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctccttaatctcttccttgttatcatcattcaaaattccaacttgaatagcttc |
100 |
Q |
| |
|
||||||| ||| |||||||||||| | || ||||||| ||| |||||| | ||| ||| ||||| || |||||| | | ||| |||||||| |||| |
|
|
| T |
1815581 |
tttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatcacttgtttgttttcttcattccacaaaccatcttgaataacttc |
1815680 |
T |
|
| Q |
101 |
aaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagactaatggtctcttctggcctgttaaaatcaagaggtttgtcccctgttagaagc |
200 |
Q |
| |
|
||| | ||||| | ||| || ||||| || |||||| |||||||||| | ||||||| ||||| |||| || |||||| ||||| ||||| ||| |
|
|
| T |
1815681 |
aaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctctcttccggcctaccaaaacaaaaaggtttctcccccgttagcagc |
1815780 |
T |
|
| Q |
201 |
tctgcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaagtgttccttgcacca |
300 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||| |||| ||||||||||||| |
|
|
| T |
1815781 |
tccacaagaactactccaaagctatatacatcacttttctcagttaattggcttgtttgcatatactctggatccaagtagccaatagttccttgcacca |
1815880 |
T |
|
| Q |
301 |
ctgttgctatctcggtttgatcaagtggaaccaatttggaagctccaaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactctt |
400 |
Q |
| |
|
||| |||| || |||||||||||||||| ||| | || ||||||||||| || ||||| || |||| | |||| ||||||||||| | |||||| |
|
|
| T |
1815881 |
ttgtggctacttcagtttgatcaagtggaatcaaccttgatgctccaaaatctgacactttagcggtgttggttccatctaagagaatgttagcactctt |
1815980 |
T |
|
| Q |
401 |
aacatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagct |
461 |
Q |
| |
|
||||||||||||||||| || | ||| |||| |||||| ||||| || | |||||||||| |
|
|
| T |
1815981 |
gacatctctatggataatgggtattgaggcagctgaatgcagatatgacagagctccagct |
1816041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 40573430 - 40573369
Alignment:
| Q |
189 |
cctgttagaagctctgcaagaactactccaaagctataaacatcacttttctcggttaattg |
250 |
Q |
| |
|
||||| || |||||||| || ||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
40573430 |
cctgtcagtagctctgctaggactactccaaatctataaacatcactcttctctgttaattg |
40573369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 40579884 - 40579826
Alignment:
| Q |
192 |
gttagaagctctgcaagaactactccaaagctataaacatcacttttctcggttaattg |
250 |
Q |
| |
|
||||| |||||||| | ||||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
40579884 |
gttagtagctctgctatgactactccaaatctataaacatcactcttctctgttaattg |
40579826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 40602376 - 40602327
Alignment:
| Q |
198 |
agctctgcaagaactactccaaagctataaacatcacttttctcggttaa |
247 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| ||||| ||||| |
|
|
| T |
40602376 |
agctctgctagaacaaccccaaagctataaacatcactcttctcagttaa |
40602327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 11845526 - 11845445
Alignment:
| Q |
204 |
gcaagaactactccaaagctataaacatcacttttctcggttaattgatgcgtttgcatgtactctgggtctaagtatccaa |
285 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||| |||||| || || | |||||| ||||||||||| |||| |
|
|
| T |
11845526 |
gcaagaactactccgaagctaaatacatcacttttctcggtaaattgacttgtatgaaagtactcagggtctaagtaaccaa |
11845445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 41703820 - 41703857
Alignment:
| Q |
213 |
actccaaagctataaacatcacttttctcggttaattg |
250 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
41703820 |
actccatagctataaacatcacttttatcggttaattg |
41703857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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