View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5659_1D_high_6 (Length: 374)
Name: NF5659_1D_high_6
Description: NF5659_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5659_1D_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 353
Target Start/End: Complemental strand, 42045965 - 42045623
Alignment:
| Q |
9 |
ggtgttaacccaggcgtaccaaaaaacaaccttattggtggtgtggtacgaatcattgacaattggaaatctcttggtagcatgatacctctaaagaatt |
108 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42045965 |
ggtgttaacccaggcgtaccaaaagacaaccttatcggtggtgtggcacgaatcattgacaattggaaatctcttggtagcatgatacctctaaagaatt |
42045866 |
T |
|
| Q |
109 |
aatcaatcacgggcttcactggctatgaccatcatgctaagatcatgaacaaaaacaaaaatgaacgtttaaatccataataatt--tgtttgttcaagt |
206 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
42045865 |
aatcaatcatgggcttcactggctatgaccatcatgctaagatcatgaacaaaaacaaaaatgaacgtttaaatccataataatttgtgtttgtttaagt |
42045766 |
T |
|
| Q |
207 |
ttgttttctgctcatcaataatttgtgtgttttgtagtttgccttcgttccttgatgcaataaaactgtggcttctccctgtttcccccacatttaatgc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42045765 |
ttgttttctgctcatcaataatttgtgtgttttgtagtttgccttcgttccttgatgcaataaaactgtggcttctccttgtttcccccacatttaatgg |
42045666 |
T |
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| Q |
307 |
ttttttgcttctttaattatcaaatgtgccgtataagtttattagag |
353 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42045665 |
ttttttgcttct----ttatcaaatgtgccgtataagtttattagag |
42045623 |
T |
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